HHsearch results for GI: 254780804 and protein with PDBid: 1sxj_E
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=3.5e-07 Score=65.16 Aligned_cols=268 Identities=11% Similarity=0.089 Sum_probs=148.6
Q ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCCCCC-----------------------EEEEEEHHHH-HCC---HHHHHHH-HH
Q ss_conf 999569965899999999997335666773-----------------------0776208896-418---9999998-71
Q gi|254780804|r 24 FIFYGSDKGLIFELINQFKKNISITYHDPF-----------------------SLVVLNALEI-QKN---ISTFWNE-IN 75 (352)
Q Consensus 24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~-----------------------~~~~~~~~e~-~~d---~~~l~~~-~~ 75 (352)
+||||+.---+...+..+.+.+..+..+.. ....+...+. ..+ ......+ ..
T Consensus 39 lLl~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 118 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQ 118 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----CCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98889799989999999999865976321234421234666511101324688704660001246763045788888776
Q ss_pred CC---------CCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 78---------88888239998477410-457898898851056560799985265431135667654311210146644
Q gi|254780804|r 76 ST---------SLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPD 145 (352)
Q Consensus 76 t~---------slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~ 145 (352)
+. +.-+..|+|+++++... ......+...++.++.++.+++.+....+-. ..+ ...+..+.+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~kiiiide~d~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~---~~i--~sR~~~i~~~~~ 193 (354)
T 1sxj_E 119 MEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII---API--KSQCLLIRCPAP 193 (354)
T ss_dssp TTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC---HHH--HTTSEEEECCCC
T ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEHHHCCHHHHHH---HHH--HCCCEEEECCCC
T ss_conf 520001211465567725999845432224677899875333144411044302265544---667--466328980797
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 200135889887543025667-5679999962001235568999999751034443488888775310122111467888
Q gi|254780804|r 146 NKIHLMDLIEESLLIGQKSIS-KEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINA 224 (352)
Q Consensus 146 ~~~~l~~~i~~~~~~~g~~i~-~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~~~~~~if~L~da 224 (352)
+..++..++...+.++|++++ ++++..++..++||.+.+.+.++.++... .++..+....+.......+.++++.
T Consensus 194 ~~~~~~~~L~~i~~~E~i~~~~~~~l~~i~~~s~Gd~r~ai~~lq~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (354)
T 1sxj_E 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNN----ELALKSSSPIIKPDWIIVIHKLTRK 269 (354)
T ss_dssp CHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT----TTEECSSCCCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCC----CCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999999998699989899999999986998999999999999739----9626567876311078999999999
Q ss_pred HHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 7641----023699999998531100014589999999999999998302568989999860899997689999999864
Q gi|254780804|r 225 TIQG----KIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRI 300 (352)
Q Consensus 225 i~~~----~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~~q~~~ 300 (352)
+... +...+...+.+++..|.++ ..++..+-..+. ....
T Consensus 270 ~~~~~~~~~~~~~~~~l~~ll~~~~~~----------------------------~~i~~~l~~~l~---------~~~~ 312 (354)
T 1sxj_E 270 IVKERSVNSLIECRAVLYDLLAHCIPA----------------------------NIILKELTFSLL---------DVET 312 (354)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHTTTCCH----------------------------HHHHHHHHHTTT---------TCTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCH----------------------------HHHHHHHHHHHH---------HCCC
T ss_conf 997175325999999999999839999----------------------------999999999998---------6277
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99899999999999999995328999899999999999
Q gi|254780804|r 301 WNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYI 338 (352)
Q Consensus 301 ~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l 338 (352)
.+.....+++..+.++|..+..+ ..+..-++-++.++
T Consensus 313 ~~~~~k~~i~~~~~~~~~rl~~g-~~~~~~le~~l~~~ 349 (354)
T 1sxj_E 313 LNTTNKSSIIEYSSVFDERLSLG-NKAIFHLEGFIAKV 349 (354)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTC-SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 99999999999999999999828-98999999999999