HHSEARCH alignment of GI: 254780804 and SCOP domain: d1fnna2

Alignment
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=96.21  E-value=0.036  Score=30.39  Aligned_cols=198  Identities=11%  Similarity=0.045  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCH--------------------
Q ss_conf             887532100101384799956996589999999999733566677307762088964189--------------------
Q gi|254780804|r    8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNI--------------------   67 (352)
Q Consensus         8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~--------------------   67 (352)
                      ++|...-++.-......+|||+----+...++.+.+.+.....  +.......... ...                    
T Consensus        30 ~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  106 (276)
T d1fnna2          30 ILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT--ARFVYINGFIY-RNFTAIIGEIARSLNIPFPRRGL  106 (276)
T ss_dssp             HHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC--CEEEEEETTTC-CSHHHHHHHHHHHTTCCCCSSCC
T ss_pred             HHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC--CCEEEECCHHH-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999998578988881688898999899999999999754468--85787323001-12466654567764334555325


Q ss_pred             ------HHHHHHHHCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHH----CCCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             ------999998717888888239998477410-457898898851----056560799985265431135667654311
Q gi|254780804|r   68 ------STFWNEINSTSLFSKKKIILIENLSTE-KKVLDCLEEIII----KNICNHIIIIKSNEIKKNNTLRKIAEKFTS  136 (352)
Q Consensus        68 ------~~l~~~~~t~slF~~~klIii~~~~~~-k~~~~~l~~~~~----~~~~~~~li~~a~~l~k~~kl~k~~e~~~~  136 (352)
                            ..+.+....   ......+++...... ......+.....    .......+|..+........+..-....-.
T Consensus       107 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~  183 (276)
T d1fnna2         107 SRDEFLALLVEHLRE---RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG  183 (276)
T ss_dssp             CHHHHHHHHHHHHHH---TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHHC
T ss_conf             435789999998752---06543320368887535431068888740443356524886258764544311303665511


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH--CCCCCCCCH
Q ss_conf             2101466442001358898875430--2566756799999620---------01235568999999751--034443488
Q gi|254780804|r  137 VLAISCYPDNKIHLMDLIEESLLIG--QKSISKEAKQILLANL---------GGDRIASRNELQKLSSY--CLEDILITE  203 (352)
Q Consensus       137 ~~~v~~~~~~~~~l~~~i~~~~~~~--g~~i~~~a~~~L~~~~---------g~d~~~l~~EleKL~ly--~~~~~~It~  203 (352)
                      ...+.+.+.+..++...+..+++..  +..+++++++.+++.+         ++|.+.+.+-+++-...  ..+.+.|+.
T Consensus       184 ~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~A~~~~~~~I~~  263 (276)
T d1fnna2         184 KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAP  263 (276)
T ss_dssp             TCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred             CHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf             01103441238889999999999852456663789999999700144465538999999999999999999818998499


Q ss_pred             HHHHHHHH
Q ss_conf             88877531
Q gi|254780804|r  204 QHVKDIIC  211 (352)
Q Consensus       204 ~dI~~~v~  211 (352)
                      +||++...
T Consensus       264 edv~~A~~  271 (276)
T d1fnna2         264 EDVRKSSK  271 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]