HHSEARCH alignment of GI: 254780804 and SCOP domain: d1iqpa2

Alignment
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=98.65  E-value=1.2e-06  Score=60.01  Aligned_cols=179  Identities=16%  Similarity=0.083  Sum_probs=121.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHH--CCHHHHHHHHH-CCCCCC-CCEEEEEECCCC-HHHH
Q ss_conf             799956996589999999999733566677307762088964--18999999871-788888-823999847741-0457
Q gi|254780804|r   23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQ--KNISTFWNEIN-STSLFS-KKKIILIENLST-EKKV   97 (352)
Q Consensus        23 iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~--~d~~~l~~~~~-t~slF~-~~klIii~~~~~-~k~~   97 (352)
                      .+||||+.-.-+...++.+.+.+..+ ...++...+++.+..  .+......+.. .....+ ..++++++++.. ....
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~~~-~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~  125 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA  125 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCHHH
T ss_conf             69997899974879999999998731-46777158756766663488888888875100157872288614344312147


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             89889885105656079998526543113566765431121014664420013588988754302566756799999620
Q gi|254780804|r   98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL  177 (352)
Q Consensus        98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~  177 (352)
                      ...+...+..++..+.+|+......+-.   ..+  ...+..+.+.+++..++..+++..+.++|+.++++++..+++.+
T Consensus       126 ~~~ll~~l~~~~~~~~~i~~~n~~~~i~---~~l--~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~  200 (231)
T d1iqpa2         126 QQALRRTMEMFSSNVRFILSCNYSSKII---EPI--QSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIA  200 (231)
T ss_dssp             HHHHHHHHHHTTTTEEEEEEESCGGGSC---HHH--HHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHCH---HHH--HCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf             8987641124776447886148766565---768--47312101233430467789988899839998999999999983


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf             012355689999997510344434888887753
Q gi|254780804|r  178 GGDRIASRNELQKLSSYCLEDILITEQHVKDII  210 (352)
Q Consensus       178 g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v  210 (352)
                      +||.+.+.+.|+..+..   .+.||.++|..+.
T Consensus       201 ~gdiR~ai~~Lq~~~~~---~~~it~e~v~~v~  230 (231)
T d1iqpa2         201 EGDMRRAINILQAAAAL---DKKITDENVFMVA  230 (231)
T ss_dssp             TTCHHHHHHHHHHHHTT---CSEECHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHC---CCCCCHHHHHHHH
T ss_conf             99799999999999984---9995899987652


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]