HHSEARCH alignment of GI: 254780804 and SCOP domain: d1jqlb_

Alignment
>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=99.80  E-value=2.4e-19  Score=144.12  Aligned_cols=137  Identities=11%  Similarity=0.193  Sum_probs=111.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCC
Q ss_conf             97633378875321001013847999569965899999999997335666773077620889641899999987178888
Q gi|254780804|r    1 MATIESHKFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLF   80 (352)
Q Consensus         1 ~~~i~~~~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~t~slF   80 (352)
                      |..|++.++.+.+++++   .+||++||+|.||+++..+.+.+.+..++.++++...++ .+  .+++.+++++.|+|||
T Consensus         1 Mm~i~~~~L~~~l~k~l---~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~t~slF   74 (140)
T d1jqlb_           1 MIRLYPEQLRAQLNEGL---RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-PN--TDWNAIFSLCQAMSLF   74 (140)
T ss_dssp             CEECCGGGHHHHHHHCC---CSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCS-TT--CCHHHHHHHHHCCCTT
T ss_pred             CCCCCHHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CC--CCHHHHHHHHCCCCCC
T ss_conf             98479999999985279---848999848299999999999999885896204665036-66--8999999997079865


Q ss_pred             CCCEEEEEECCCC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH-HHHHHHCCCC
Q ss_conf             8823999847741--0457898898851056560799985265431135667654-3112101466
Q gi|254780804|r   81 SKKKIILIENLST--EKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEK-FTSVLAISCY  143 (352)
Q Consensus        81 ~~~klIii~~~~~--~k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~-~~~~~~v~~~  143 (352)
                      |++|+|+|++...  .++..+.|.+|+.+|++++++|+.++++++.++-.|++.. .+.+..|+|.
T Consensus        75 ~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~Cq  140 (140)
T d1jqlb_          75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ  140 (140)
T ss_dssp             CCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEECC
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCEEEECC
T ss_conf             686799998378798477899999998279998799998278771456519999998397489588


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]