HHSEARCH alignment of GI: 254780804 and SCOP domain: d1jr3a1

Alignment
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=98.50  E-value=1.2e-06  Score=60.12  Aligned_cols=113  Identities=10%  Similarity=-0.031  Sum_probs=91.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
Q ss_conf             21114678887641023699999998531100014589999999999999998302568989999860899997689999
Q gi|254780804|r  215 VLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNIL  294 (352)
Q Consensus       215 ~~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~  294 (352)
                      ...+|+|+++++.||..+++..++++...|.+|..++..|..++|.+..++..    +......        .......+
T Consensus         4 ~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~----~~~~~~~--------~~~~~~~~   71 (126)
T d1jr3a1           4 DDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLS----PAALGND--------MAAIELRM   71 (126)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTC----TTCCCSG--------GGGTHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC----CCCCCCC--------HHHHHHHH
T ss_conf             79999999999908999999999999985978999999999999999999863----0000001--------07788999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             9998649989999999999999999532899989999999999999
Q gi|254780804|r  295 QESLRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTILYIAQ  340 (352)
Q Consensus       295 ~~q~~~~s~~~l~~~l~~L~~~d~~~K~~~~~~~~il~~~ll~l~~  340 (352)
                      ...++.|+.+.+.+.+..+.++...+|. +..++..++-+++++..
T Consensus        72 ~~~a~~~~~~~L~~~~~il~~~~~~ik~-s~~~r~~~Em~llrll~  116 (126)
T d1jr3a1          72 RELARTIPPTDIQLYYQTLLIGRKELPY-APDRRMGVEMTLLRALA  116 (126)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHTTT-SSSHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_conf             9999718999999999999999999731-89858999999999998


SCOP domain information

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: gamma subunit
species: Escherichia coli [TaxId: 562]