HHSEARCH alignment of GI: 254780804 and SCOP domain: d1jr3d1

Alignment
>d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]}
Probab=99.71  E-value=2.4e-17  Score=130.86  Aligned_cols=122  Identities=11%  Similarity=0.141  Sum_probs=110.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             11146788876410236999999985311000145899999999999999983025689899998608999976899999
Q gi|254780804|r  216 LYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQ  295 (352)
Q Consensus       216 ~~if~L~dai~~~~~~~a~~~l~~l~~~g~~~~~il~~L~~~f~~L~~~~~~~~~~g~~~~~~~~~~~~p~~~~~k~~~~  295 (352)
                      +++|+|+||++.||..+|+.+++++..+|++|+.+++++.+||++|+.++..  .++.+..++++.++  +||++++.+.
T Consensus         1 f~~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~--~~~~~~~~~~~~~~--i~~~~~~~~~   76 (127)
T d1jr3d1           1 FTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQ--SAHTPLRALFDKHR--VWQNRRGMMG   76 (127)
T ss_dssp             CCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTC--SSSSCHHHHHHHHT--CCSSHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHCC--CCHHHHHHHH
T ss_conf             9888999999859999999999999886996699999999999999998875--01598999997849--9999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Q ss_conf             99864998999999999999999953289-99899999999999996
Q gi|254780804|r  296 ESLRIWNKNLVRETLHKIDHRIHLARKKK-YLEKNIIFQTILYIAQT  341 (352)
Q Consensus       296 ~q~~~~s~~~l~~~l~~L~~~d~~~K~~~-~~~~~il~~~ll~l~~~  341 (352)
                      +|+++|+.+++.+++..|.++|..+|++. .++...++.+++.+|..
T Consensus        77 ~~~~~~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc~~  123 (127)
T d1jr3d1          77 EALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK  123 (127)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf             99986899999999999999999984899899999999999998480


SCOP domain information

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: delta subunit
species: Escherichia coli [TaxId: 562]