HHSEARCH alignment of GI: 254780804 and SCOP domain: d1sxja2

Alignment
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.27  E-value=3.7e-05  Score=50.13  Aligned_cols=174  Identities=11%  Similarity=0.129  Sum_probs=106.8

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHCCHHHHHHH----H-------------HCCCCCCCCE
Q ss_conf             4799956996589999999999733566677307762088964189999998----7-------------1788888823
Q gi|254780804|r   22 FVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNE----I-------------NSTSLFSKKK   84 (352)
Q Consensus        22 ~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~----~-------------~t~slF~~~k   84 (352)
                      ..+||||+.-.-+...+..+.+....      ++...+..+.. ....+...    +             ...+..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGY------DILEQNASDVR-SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHF  125 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTC------EEEEECTTSCC-CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH------HHHCCCCCCCH-HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCE
T ss_conf             44999879999888999999999875------12013443221-168899999887631212101334320145566513


Q ss_pred             EEEEECCCC----HHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf             999847741----045789889885105656079998526543-113566765431121014664420013588988754
Q gi|254780804|r   85 IILIENLST----EKKVLDCLEEIIIKNICNHIIIIKSNEIKK-NNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLL  159 (352)
Q Consensus        85 lIii~~~~~----~k~~~~~l~~~~~~~~~~~~li~~a~~l~k-~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~  159 (352)
                      ++++.+...    .......+..... ++...++++......+ -..+      ......+.+.+++..++...++..+.
T Consensus       126 vi~ide~~~~~~~~~~~~~~~~~~~~-~~~~~ii~i~~~~~~~~~~~l------~~~~~~i~f~~~~~~~i~~~l~~i~~  198 (253)
T d1sxja2         126 VIIMDEVDGMSGGDRGGVGQLAQFCR-KTSTPLILICNERNLPKMRPF------DRVCLDIQFRRPDANSIKSRLMTIAI  198 (253)
T ss_dssp             EEEECSGGGCCTTSTTHHHHHHHHHH-HCSSCEEEEESCTTSSTTGGG------TTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCC------CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             77763011111000134677765401-234222111355552113532------44036531145314678899999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC
Q ss_conf             30256675679999962001235568999999751034443488888775310
Q gi|254780804|r  160 IGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDILITEQHVKDIICD  212 (352)
Q Consensus       160 ~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~~  212 (352)
                      ++|+.++++++..|+..++||.+.+.+.|+-....   .+.|+.++|.++...
T Consensus       199 ~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~~~~~~---~~~i~~~~~~~~~~~  248 (253)
T d1sxja2         199 REKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT---TKTINHENINEISKA  248 (253)
T ss_dssp             HHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHH---SSCCCTTHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHCH
T ss_conf             80999999999999996797099999999999975---998899999999650


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]