HHSEARCH alignment of GI: 254780804 and SCOP domain: d1sxjb2

Alignment
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.90  E-value=7.8e-08  Score=67.89  Aligned_cols=179  Identities=11%  Similarity=0.042  Sum_probs=123.7

Q ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHC--C-HHHHHHHHHCCCC--CCCCEEEEEECCCCH-HHH
Q ss_conf             999569965899999999997335666773077620889641--8-9999998717888--888239998477410-457
Q gi|254780804|r   24 FIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQK--N-ISTFWNEINSTSL--FSKKKIILIENLSTE-KKV   97 (352)
Q Consensus        24 yLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~~e~~~--d-~~~l~~~~~t~sl--F~~~klIii~~~~~~-k~~   97 (352)
                      +||||+.-.-+...+..+.+.+..+. ..+++..+...+...  + ...+.+.+.+...  .+..++|+++++... ...
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~-~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~  117 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA  117 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHH
T ss_conf             99988999870546999999972566-43221111134557852116678878876224777635999982443232157


Q ss_pred             HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             89889885105656079998526543113566765431121014664420013588988754302566756799999620
Q gi|254780804|r   98 LDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL  177 (352)
Q Consensus        98 ~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~  177 (352)
                      ...+...++.++..+.+++......+-.   ..+  ...+..+.+.+++..++..++...++++|+.+++++++.++..+
T Consensus       118 ~~~ll~~~e~~~~~~~~i~~~~~~~~i~---~~l--~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s  192 (224)
T d1sxjb2         118 QQALRRTMELYSNSTRFAFACNQSNKII---EPL--QSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA  192 (224)
T ss_dssp             HHTTHHHHHHTTTTEEEEEEESCGGGSC---HHH--HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHH---HHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf             7877520112333336653147430210---678--87777765313322456788877777404678999999999986


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             0123556899999975103444348888877531
Q gi|254780804|r  178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIIC  211 (352)
Q Consensus       178 g~d~~~l~~EleKL~ly~~~~~~It~~dI~~~v~  211 (352)
                      +||.+.+.+.|+-...   +.+.||.++|.+++.
T Consensus       193 ~Gd~R~ai~~Lq~~~~---~~~~i~~~~i~~~~d  223 (224)
T d1sxjb2         193 EGDMRQAINNLQSTVA---GHGLVNADNVFKIVD  223 (224)
T ss_dssp             TTCHHHHHHHHHHHHH---HHSSBCHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHC
T ss_conf             9969999999999997---699848999999868


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]