HHSEARCH alignment of GI: 254780804 and SCOP domain: d1sxjc2

Alignment
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.11  E-value=2.3e-09  Score=78.08  Aligned_cols=194  Identities=14%  Similarity=0.131  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCC----CCEEEEEEHHHHHCCHHHHHHHHHCC-CCCCCC
Q ss_conf             8753210010138479995699658999999999973356667----73077620889641899999987178-888882
Q gi|254780804|r    9 FIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHD----PFSLVVLNALEIQKNISTFWNEINST-SLFSKK   83 (352)
Q Consensus         9 ~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~----~~~~~~~~~~e~~~d~~~l~~~~~t~-slF~~~   83 (352)
                      -+++.-++....|  +||||+.-.-+...+..+.+.+......    +++.....+.+....  ......... ....+.
T Consensus        25 ~L~~~i~~~~~~~--lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  100 (227)
T d1sxjc2          25 TVRKFVDEGKLPH--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN--QIKDFASTRQIFSKGF  100 (227)
T ss_dssp             HHHHHHHTTCCCC--EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT--HHHHHHHBCCSSSCSC
T ss_pred             HHHHHHHCCCCCE--EEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEC--CHHHCCCCCCCCCCCE
T ss_conf             9999997699985--99988998775589999999851677764157731555687543210--0010111000257771


Q ss_pred             EEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             39998477410-45789889885105656079998526543113566765431121014664420013588988754302
Q gi|254780804|r   84 KIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQ  162 (352)
Q Consensus        84 klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g  162 (352)
                      ++|+++++... ......+...++.++..+.+++......+-.   ..+  ...+..+.|.+++..++..++...+..+|
T Consensus       101 kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~---~~i--~sr~~~i~~~~~~~~~i~~~l~~I~~~e~  175 (227)
T d1sxjc2         101 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT---PAL--LSQCTRFRFQPLPQEAIERRIANVLVHEK  175 (227)
T ss_dssp             EEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC---HHH--HTTSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH---HHH--HHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8999966320002378999988631120023201267087759---999--98875401235652000110212211112


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHH
Q ss_conf             5667567999996200123556899999975103--444348888877531
Q gi|254780804|r  163 KSISKEAKQILLANLGGDRIASRNELQKLSSYCL--EDILITEQHVKDIIC  211 (352)
Q Consensus       163 ~~i~~~a~~~L~~~~g~d~~~l~~EleKL~ly~~--~~~~It~~dI~~~v~  211 (352)
                      +++++++++.+++.++||.+.+.+.||.+..+..  +...||.++|.++++
T Consensus       176 i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v~e~~g  226 (227)
T d1sxjc2         176 LKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG  226 (227)
T ss_dssp             CCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHC
T ss_conf             458989999999984996999999999999855788888228999999768


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]