HHSEARCH alignment of GI: 254780804 and SCOP domain: d1sxjd2

Alignment
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.86  E-value=7e-08  Score=68.18  Aligned_cols=195  Identities=15%  Similarity=0.090  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEH-----HHHHCCHHHHHHHHHCC-----
Q ss_conf             88753210010138479995699658999999999973356667730776208-----89641899999987178-----
Q gi|254780804|r    8 KFIQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNA-----LEIQKNISTFWNEINST-----   77 (352)
Q Consensus         8 ~~~~~~~~~~~~~~~iyLi~G~d~~l~~~~~~~l~k~~~~~~~~~~~~~~~~~-----~e~~~d~~~l~~~~~t~-----   77 (352)
                      +.+++.-++....  -++|||+.-.-+...++.+.+.+...............     .+...  ..+-+...+.     
T Consensus        22 ~~l~~~i~~~~~~--~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   97 (237)
T d1sxjd2          22 TVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR--EKVKNFARLTVSKPS   97 (237)
T ss_dssp             HHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT--THHHHHHHSCCCCCC
T ss_pred             HHHHHHHHCCCCC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHHEECCCCCCCHHHH--HHHHHHHHHHHHHHH
T ss_conf             9999999869988--599989999984999999999970976334321220021135606789--999887654443246


Q ss_pred             ------CCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH
Q ss_conf             ------88888239998477410-45789889885105656079998526543113566765431121014664420013
Q gi|254780804|r   78 ------SLFSKKKIILIENLSTE-KKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHL  150 (352)
Q Consensus        78 ------slF~~~klIii~~~~~~-k~~~~~l~~~~~~~~~~~~li~~a~~l~k~~kl~k~~e~~~~~~~v~~~~~~~~~l  150 (352)
                            ...+..++|+++++... ......+...+..++....+++......+-.  ...   ...+..+.+.+.+..++
T Consensus        98 ~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~--~~l---~sr~~~i~f~~~~~~~~  172 (237)
T d1sxjd2          98 KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRII--DPL---ASQCSKFRFKALDASNA  172 (237)
T ss_dssp             TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC--HHH---HHHSEEEECCCCCHHHH
T ss_pred             HHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--CCC---CCHHHHHCCCCCCCCCC
T ss_conf             7877613566736999955133677778887630122223333212246642223--311---10001102333333211


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHHHHHHHHH
Q ss_conf             5889887543025667567999996200123556899999975---103444348888877531
Q gi|254780804|r  151 MDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSS---YCLEDILITEQHVKDIIC  211 (352)
Q Consensus       151 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~d~~~l~~EleKL~l---y~~~~~~It~~dI~~~v~  211 (352)
                      ..++...+.++|+.+++++++.++..++||.+.+.+.|+..+.   +.++++.||.++|+++.+
T Consensus       173 ~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~~~~~It~~~i~e~~g  236 (237)
T d1sxjd2         173 IDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG  236 (237)
T ss_dssp             HHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHHHC
T ss_conf             0010114555267578999999999859989999999999997363127888458999998529


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]