BLAST/PSIBLAST alignment of GI: 254780804 and GI: 116254458 at iteration 1
>gi|116254458|ref|YP_770296.1| DNA polymerase III subunit delta [Rhizobium leguminosarum bv. viciae 3841] Length = 346
>gi|115259106|emb|CAK10217.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 346
Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 185/339 (54%), Gaps = 7/339 (2%)
Query: 1 MATIESHKF---IQKSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVV 57
MA I+SH+F +QKS +N + +F+ YG D+GL+ E + + DPFSL
Sbjct: 1 MAEIKSHEFETFLQKSARN----YRIFVIYGPDRGLVSERASLLAARSGVALDDPFSLTK 56
Query: 58 LNALEIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIK 117
L+ ++QK+ +E+ S LF +K+I I + EK ++D L + K + +I++
Sbjct: 57 LDIGDLQKDPGRLVDEVQSIGLFGGEKLIWIRGAANEKYLVDSLALLAEKPLEAASLIVE 116
Query: 118 SNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANL 177
+ ++KK + LRK AE SV+ I Y D+ L LI+ L + I+ A+Q L+A +
Sbjct: 117 AGDLKKGSLLRKTAEAARSVMTIPSYADDSRALNALIDTELGAEKLGITPAARQALIALI 176
Query: 178 GGDRIASRNELQKLSSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLA 237
GGDRIASRNE++KL+ YC + E HV +II D + +++ ++A + G + +
Sbjct: 177 GGDRIASRNEVRKLALYCRGFDTVEEHHVTEIIGDASAISVDDAVDAILGGDLNAFLHAM 236
Query: 238 DFFLASKMPSHALLHGFLQKFQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQES 297
+SK +L L++FQLL+ + + + +I+Q +++ ++ I++++
Sbjct: 237 QKISSSKTAIFLVLQACLKQFQLLDSMRAEMDEKRLQPPQIMQTMGRHLHFRRKPIIEQA 296
Query: 298 LRIWNKNLVRETLHKIDHRIHLARKKKYLEKNIIFQTIL 336
LR W + +++ I +R+++ LE ++ QT+L
Sbjct: 297 LRQWTAESIARESNRLQAAILQSRRRQVLEDSVAMQTLL 335