RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) >gnl|CDD|31655 COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]. Length = 334 Score = 103 bits (259), Expect = 5e-23 Identities = 68/317 (21%), Positives = 143/317 (45%), Gaps = 11/317 (3%) Query: 23 VFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFWNEINSTSLFSK 82 V++ YG D+GL+ E + K D F + + + + +E+ S SLF + Sbjct: 18 VYLLYGEDEGLLEEAADAILKRA---LADGFDENYSFFDDSELDWADLLSELESPSLFGE 74 Query: 83 KKIILI---ENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLA 139 K+++++ E + K L LE + + +++++SN++ K L K +K + Sbjct: 75 KRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVV 134 Query: 140 ISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRNELQKLSSYCLEDI 199 + C P ++ L I++ I +EA Q+LL LGG+ +A E++KL+ Y D Sbjct: 135 VECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYA-GDK 193 Query: 200 LITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGFLQKFQ 259 IT + V++++ D I ++ +A ++G + A+ L L LL ++F+ Sbjct: 194 EITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFR 253 Query: 260 LLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRIHL 319 LL ++ + E + I ++ + +++ R + + + L ++ ++ Sbjct: 254 LLLQLKALAEKGKSLQQAAKS---LGIPYRRKKLFKKAARRLSLKQLLKAL-RLLAQLDY 309 Query: 320 ARKKKYLEKNIIFQTIL 336 K Y + + L Sbjct: 310 QIKTGYGDPVWALELFL 326 >gnl|CDD|177096 CHL00204, ycf1, Ycf1; Provisional. Length = 1832 Score = 31.2 bits (71), Expect = 0.48 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 26/146 (17%) Query: 12 KSTKNLFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKNISTFW 71 K TK + F+F+ K +I EL K+N I + LN + +K+ S Sbjct: 952 KETKKWIIKSFLFL-----KRIIKEL---SKRNP-ILLFGLREIYELNETKKEKD-SIIS 1001 Query: 72 NEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNTLRKIA 131 N++ S + + + TEKK IK++ + I+ N+I+K + K Sbjct: 1002 NQMIHESSVQIRSMEWTNSSLTEKK---------IKDLTDRTKTIR-NQIEK---ITKEK 1048 Query: 132 EKFTSVLAISCYPDNKIHLMDLIEES 157 +K T+ + IS NK I ES Sbjct: 1049 KKITNTINISP---NKTSYDSKIIES 1071 >gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]. Length = 293 Score = 28.4 bits (63), Expect = 3.3 Identities = 15/80 (18%), Positives = 35/80 (43%) Query: 106 IKNICNHIIIIKSNEIKKNNTLRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSI 165 + +C+ +II+ +I T ++ EKF I P+ L L+ G++ + Sbjct: 200 AEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEEL 259 Query: 166 SKEAKQILLANLGGDRIASR 185 ++ + +L + + I + Sbjct: 260 AEILEALLEEGVKIESIEVK 279 >gnl|CDD|147223 pfam04943, Pox_F11, Poxvirus F11 protein. The protein F11 is an early virus protein. Length = 366 Score = 27.8 bits (62), Expect = 4.1 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 8/63 (12%) Query: 62 EIQKNISTFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNEI 121 E+ +I W+E KK+ + + + ++ I+ I + + + Sbjct: 301 ELLSSIPELWDEY--------KKLASDVSSLLDYGQNEYIDTYILGLISRCEAGMYRDTL 352 Query: 122 KKN 124 N Sbjct: 353 VNN 355 >gnl|CDD|144153 pfam00450, Peptidase_S10, Serine carboxypeptidase. Length = 415 Score = 27.6 bits (62), Expect = 4.8 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 7/47 (14%) Query: 262 EKIHIIK-------ECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + +H C++ K+++P+ +L+ LR+ Sbjct: 288 KALHANVGSVGEWSRCNDEVNNWYGDDISKSMLPILPKLLEGGLRVL 334 >gnl|CDD|38940 KOG3736, KOG3736, KOG3736, Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]. Length = 578 Score = 27.6 bits (61), Expect = 5.7 Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 69 TFWNEINSTSLFSKKKIILIENLSTEKKVLDCLEEIIIKNICNHIIIIKSNE 120 T + IN T + K+IIL+++ S + D LEE + + I+ K E Sbjct: 161 TVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRTKKRE 212 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.323 0.137 0.386 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,107,869 Number of extensions: 222704 Number of successful extensions: 535 Number of sequences better than 10.0: 1 Number of HSP's gapped: 528 Number of HSP's successfully gapped: 28 Length of query: 352 Length of database: 6,263,737 Length adjustment: 95 Effective length of query: 257 Effective length of database: 4,210,882 Effective search space: 1082196674 Effective search space used: 1082196674 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 58 (26.4 bits)