RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780804|ref|YP_003065217.1| DNA polymerase III subunit delta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) >d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 202 Score = 26.6 bits (58), Expect = 2.9 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 195 CLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKMPSHALLHGF 254 L ++ E H ++ I E ++G+I N+I +A HA+ GF Sbjct: 124 GLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVNSIAIAGVLAV-----HAVTTGF 178 Query: 255 LQ 256 Q Sbjct: 179 AQ 180 >d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]} Length = 200 Score = 26.3 bits (57), Expect = 3.9 Identities = 15/50 (30%), Positives = 21/50 (42%) Query: 17 LFLSHFVFIFYGSDKGLIFELINQFKKNISITYHDPFSLVVLNALEIQKN 66 + H VF+ Y SD I +++ I+ Y V L LEI N Sbjct: 10 VVADHRVFMKYNSDLNTIRTRVHEIVNFINGFYRSLNIHVSLTDLEIWSN 59 >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} Length = 483 Score = 26.3 bits (57), Expect = 4.1 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 10/120 (8%) Query: 192 SSYCLEDILITEQHVKDIICDTHVLYIEEIINATIQGKIYNAIMLADFFLASKM---PSH 248 S+ E + Q ++I+ E T L D + + M Sbjct: 257 SASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDI 316 Query: 249 ALLHGFLQKFQLLEKIHIIK-------ECSNISFEKIIQKTEKNIIPMKRNILQESLRIW 301 + + F +++ +H+ EC+N K+ K I + +L+ + I Sbjct: 317 SFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIV 376 >d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824 Score = 25.8 bits (56), Expect = 5.5 Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 258 FQLLEKIHIIKECSNISFEKIIQKTEKNIIPMKRNILQESLRIWNKNLVRETLHKIDHRI 317 + E + ++ + + ++K + T K +L E+L W +L+ L + I Sbjct: 333 LAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPEALERWPVHLLETLLPRHLQII 392 Query: 318 HL 319 + Sbjct: 393 YE 394 >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 Score = 25.9 bits (56), Expect = 5.6 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 16/144 (11%) Query: 72 NEINSTSLFSKKKIILIE-----NLSTEKKVLDCLEEIIIKNICNHIIIIKSNEIKKNNT 126 + + + K+ LI+ + + +L LEE ++ ++ K T Sbjct: 105 DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK---FLLATTDPQKLPVT 161 Query: 127 LRKIAEKFTSVLAISCYPDNKIHLMDLIEESLLIGQKSISKEAKQILLANLGGDRIASRN 186 + +F + + +E L + A Q+L G + + Sbjct: 162 ILSRCLQFH------LKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALS 215 Query: 187 ELQKLSSYCLEDILITEQHVKDII 210 + + D ++ Q V ++ Sbjct: 216 LTDQAIASG--DGQVSTQAVSAML 237 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.137 0.386 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,300,985 Number of extensions: 62983 Number of successful extensions: 168 Number of sequences better than 10.0: 1 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 21 Length of query: 352 Length of database: 2,407,596 Length adjustment: 86 Effective length of query: 266 Effective length of database: 1,226,816 Effective search space: 326333056 Effective search space used: 326333056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.7 bits)