254780805
chromosome partitioning protein B
GeneID in NCBI database: | 8209811 | Locus tag: | CLIBASIA_03480 |
Protein GI in NCBI database: | 254780805 | Protein Accession: | YP_003065218.1 |
Gene range: | +(450712, 451614) | Protein Length: | 300aa |
Gene description: | chromosome partitioning protein B | ||
COG prediction: | [K] Predicted transcriptional regulators | ||
KEGG prediction: | parB; chromosome partitioning protein B; K03497 chromosome partitioning protein, ParB family | ||
SEED prediction: | Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Bacterial Cytoskeleton; | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | |||
315122028 | 298 | chromosome partitioning protein B [Candidatus Liberibac | 1 | 1e-121 | |
86359697 | 293 | chromosome partitioning protein B [Rhizobium etli CFN 4 | 1 | 4e-86 | |
222087925 | 294 | chromosome partitioning protein B [Agrobacterium radiob | 1 | 8e-86 | |
222150242 | 292 | chromosome partitioning protein [Agrobacterium vitis S4 | 1 | 1e-85 | |
218682743 | 293 | putative chromosome partitioning protein [Rhizobium etl | 1 | 2e-85 | |
190893975 | 293 | chromosome partitioning protein B [Rhizobium etli CIAT | 1 | 5e-85 | |
327191204 | 293 | chromosome partitioning protein B [Rhizobium etli CNPAF | 1 | 6e-85 | |
209551498 | 293 | parB-like partition protein [Rhizobium leguminosarum bv | 1 | 3e-84 | |
116254459 | 293 | chromosome partitioning protein [Rhizobium leguminosaru | 1 | 7e-84 | |
325294198 | 293 | chromosome partitioning protein [Agrobacterium sp. H13- | 1 | 1e-83 |
>gi|315122028|ref|YP_004062517.1| chromosome partitioning protein B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 298 | Back alignment and organism information |
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Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/293 (75%), Positives = 254/293 (86%) Query: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFES 60 MSNN SKRRLGRGLAALIGEVNQ DS EKKTE E Q+ ISIHSIVPNPHNPR+ F+S Sbjct: 1 MSNNNSKRRLGRGLAALIGEVNQPTDSYEKKTEKPSEYQNHISIHSIVPNPHNPRDCFDS 60 Query: 61 EGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKS 120 E LE+L +SI SHGI+QP+IVR +DNGLYKIIAGERRFRAAK ASLS++PVIIR++D+K Sbjct: 61 EELEELSKSILSHGILQPIIVREVDNGLYKIIAGERRFRAAKKASLSKIPVIIRDIDDKH 120 Query: 121 SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180 SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQND+GSI+GKSRSH++NILRILKLP Sbjct: 121 SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDLGSIIGKSRSHISNILRILKLPD 180 Query: 181 SVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIF 240 SV++MI K E+SLGHAR L+ TSDPLSLA++I+SKKMSVRDTEELV+E +NK KK F Sbjct: 181 SVKKMILKGELSLGHARALILTSDPLSLAEIIISKKMSVRDTEELVKETENKGINLKKSF 240 Query: 241 EGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLL 293 + ++ LEKKISSK+GLN+SIKH NN+GQ CIKY+TNEQL +ICSLL Sbjct: 241 KKDVVQKNDFAILEKKISSKLGLNVSIKHLNNRGQVCIKYKTNEQLDLICSLL 293 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86359697|ref|YP_471589.1| chromosome partitioning protein B [Rhizobium etli CFN 42] Length = 293 | Back alignment and organism information |
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>gi|222087925|ref|YP_002546463.1| chromosome partitioning protein B [Agrobacterium radiobacter K84] Length = 294 | Back alignment and organism information |
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>gi|222150242|ref|YP_002551199.1| chromosome partitioning protein [Agrobacterium vitis S4] Length = 292 | Back alignment and organism information |
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>gi|218682743|ref|ZP_03530344.1| putative chromosome partitioning protein [Rhizobium etli CIAT 894] Length = 293 | Back alignment and organism information |
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>gi|190893975|ref|YP_001980517.1| chromosome partitioning protein B [Rhizobium etli CIAT 652] Length = 293 | Back alignment and organism information |
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>gi|327191204|gb|EGE58247.1| chromosome partitioning protein B [Rhizobium etli CNPAF512] Length = 293 | Back alignment and organism information |
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>gi|209551498|ref|YP_002283415.1| parB-like partition protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 293 | Back alignment and organism information |
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>gi|116254459|ref|YP_770297.1| chromosome partitioning protein [Rhizobium leguminosarum bv. viciae 3841] Length = 293 | Back alignment and organism information |
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>gi|325294198|ref|YP_004280062.1| chromosome partitioning protein [Agrobacterium sp. H13-3] Length = 293 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
TIGR00180 | 187 | TIGR00180, parB_part, ParB-like partition proteins | 3e-40 | |
TIGR03734 | 554 | TIGR03734, PRTRC_parB, PRTRC system ParB family protein | 1e-26 | |
PRK13832 | 520 | PRK13832, PRK13832, plasmid partitioning protein; Provi | 2e-13 | |
pfam02195 | 90 | pfam02195, ParBc, ParB-like nuclease domain | 1e-19 | |
smart00470 | 89 | smart00470, ParB, ParB-like nuclease domain | 3e-19 | |
TIGR03454 | 325 | TIGR03454, partition_RepB, plasmid partitioning protein | 2e-07 | |
PRK13866 | 336 | PRK13866, PRK13866, plasmid partitioning protein RepB; | 8e-05 | |
TIGR00763 | 775 | TIGR00763, lon, ATP-dependent protease La | 2e-04 | |
pfam08535 | 93 | pfam08535, KorB, KorB domain | 0.004 | |
COG1475 | 240 | COG1475, Spo0J, Predicted transcriptional regulators [T | 7e-34 |
>gnl|CDD|161748 TIGR00180, parB_part, ParB-like partition proteins | Back alignment and domain information |
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>gnl|CDD|163446 TIGR03734, PRTRC_parB, PRTRC system ParB family protein | Back alignment and domain information |
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>gnl|CDD|184353 PRK13832, PRK13832, plasmid partitioning protein; Provisional | Back alignment and domain information |
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>gnl|CDD|145381 pfam02195, ParBc, ParB-like nuclease domain | Back alignment and domain information |
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>gnl|CDD|128746 smart00470, ParB, ParB-like nuclease domain | Back alignment and domain information |
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>gnl|CDD|163272 TIGR03454, partition_RepB, plasmid partitioning protein RepB | Back alignment and domain information |
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>gnl|CDD|172387 PRK13866, PRK13866, plasmid partitioning protein RepB; Provisional | Back alignment and domain information |
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>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La | Back alignment and domain information |
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>gnl|CDD|149550 pfam08535, KorB, KorB domain | Back alignment and domain information |
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>gnl|CDD|31664 COG1475, Spo0J, Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
COG1475 | 240 | Spo0J Stage 0 sporulation protein J (antagonist of Soj) | 100.0 | |
PRK13698 | 323 | plasmid-partitioning protein; Provisional | 99.76 | |
TIGR03454 | 325 | partition_RepB plasmid partitioning protein RepB. Membe | 100.0 | |
PRK13866 | 336 | plasmid partitioning protein RepB; Provisional | 99.95 | |
TIGR00180 | 192 | parB_part ParB-like partition proteins; InterPro: IPR00 | 99.94 | |
PRK13832 | 518 | plasmid partitioning protein; Provisional | 99.95 | |
pfam02195 | 90 | ParBc ParB-like nuclease domain. | 99.9 | |
smart00470 | 89 | ParB ParB-like nuclease domain. Plasmid RK2 ParB prefer | 99.87 | |
COG5119 | 119 | Uncharacterized protein, contains ParB-like nuclease do | 96.17 | |
KOG3388 | 136 | consensus | 95.17 | |
pfam08857 | 162 | ParBc_2 Putative ParB-like nuclease. This domain is pro | 92.72 | |
pfam08535 | 93 | KorB KorB domain. This family consists of several KorB | 98.23 | |
pfam07506 | 185 | RepB RepB plasmid partitioning protein. This family inc | 97.67 | |
pfam02001 | 100 | DUF134 Protein of unknown function DUF134. This family | 94.7 | |
COG1342 | 99 | Predicted DNA-binding proteins [General function predic | 94.65 | |
COG2522 | 119 | Predicted transcriptional regulator [General function p | 94.23 | |
PRK04217 | 110 | hypothetical protein; Provisional | 93.86 | |
pfam09862 | 113 | DUF2089 Protein of unknown function(DUF2089). This doma | 92.5 | |
PRK06811 | 185 | RNA polymerase factor sigma-70; Validated | 92.09 | |
PRK09706 | 135 | transcriptional repressor DicA; Reviewed | 91.74 | |
smart00530 | 56 | HTH_XRE Helix-turn-helix XRE-family like proteins. | 91.7 | |
COG2390 | 321 | DeoR Transcriptional regulator, contains sigma factor-r | 91.17 | |
pfam01381 | 55 | HTH_3 Helix-turn-helix. This large family of DNA bindin | 90.64 | |
PHA01976 | 67 | helix-turn-helix protein | 95.17 | |
TIGR02957 | 287 | SigX4 RNA polymerase sigma-70 factor, TIGR02957 family; | 94.88 | |
cd00569 | 42 | HTH_Hin_like Helix-turn-helix domain of Hin and related | 94.48 | |
pfam04814 | 177 | HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus | 93.85 | |
PRK12529 | 178 | RNA polymerase sigma factor; Provisional | 93.31 | |
PRK12525 | 168 | RNA polymerase sigma factor; Provisional | 92.6 | |
PRK09726 | 88 | DNA-binding transcriptional regulator HipB; Provisional | 92.4 | |
TIGR03070 | 58 | couple_hipB transcriptional regulator, y4mF family. Mem | 91.92 | |
PRK12528 | 167 | RNA polymerase sigma factor; Provisional | 91.48 | |
PRK12523 | 172 | RNA polymerase sigma factor; Reviewed | 91.3 | |
COG1476 | 68 | Predicted transcriptional regulators [Transcription] | 90.18 | |
TIGR02980 | 229 | SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subf | 94.93 | |
pfam06250 | 320 | DUF1016 Protein of unknown function (DUF1016). Family o | 92.85 | |
TIGR02846 | 228 | spore_sigmaK RNA polymerase sigma-K factor; InterPro: I | 92.68 | |
pfam11300 | 130 | DUF3102 Protein of unknown function (DUF3102). This fam | 92.03 | |
pfam03235 | 99 | DUF262 Protein of unknown function DUF262. | 90.34 |
>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription] | Back alignment and domain information |
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>PRK13698 plasmid-partitioning protein; Provisional | Back alignment and domain information |
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>TIGR03454 partition_RepB plasmid partitioning protein RepB | Back alignment and domain information |
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>PRK13866 plasmid partitioning protein RepB; Provisional | Back alignment and domain information |
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>TIGR00180 parB_part ParB-like partition proteins; InterPro: IPR004437 This group of chromosomal and plasmid partition proteins are related to ParB, including Spo0J, RepB, and SopB | Back alignment and domain information |
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>PRK13832 plasmid partitioning protein; Provisional | Back alignment and domain information |
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>pfam02195 ParBc ParB-like nuclease domain | Back alignment and domain information |
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>smart00470 ParB ParB-like nuclease domain | Back alignment and domain information |
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>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only] | Back alignment and domain information |
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>KOG3388 consensus | Back alignment and domain information |
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>pfam08857 ParBc_2 Putative ParB-like nuclease | Back alignment and domain information |
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>pfam08535 KorB KorB domain | Back alignment and domain information |
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>pfam07506 RepB RepB plasmid partitioning protein | Back alignment and domain information |
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>pfam02001 DUF134 Protein of unknown function DUF134 | Back alignment and domain information |
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>COG1342 Predicted DNA-binding proteins [General function prediction only] | Back alignment and domain information |
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>COG2522 Predicted transcriptional regulator [General function prediction only] | Back alignment and domain information |
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>PRK04217 hypothetical protein; Provisional | Back alignment and domain information |
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>pfam09862 DUF2089 Protein of unknown function(DUF2089) | Back alignment and domain information |
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>PRK06811 RNA polymerase factor sigma-70; Validated | Back alignment and domain information |
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>PRK09706 transcriptional repressor DicA; Reviewed | Back alignment and domain information |
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>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins | Back alignment and domain information |
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>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] | Back alignment and domain information |
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>pfam01381 HTH_3 Helix-turn-helix | Back alignment and domain information |
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>PHA01976 helix-turn-helix protein | Back alignment and domain information |
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>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family; InterPro: IPR014303 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription | Back alignment and domain information |
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>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella | Back alignment and domain information |
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>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus | Back alignment and domain information |
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>PRK12529 RNA polymerase sigma factor; Provisional | Back alignment and domain information |
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>PRK12525 RNA polymerase sigma factor; Provisional | Back alignment and domain information |
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>PRK09726 DNA-binding transcriptional regulator HipB; Provisional | Back alignment and domain information |
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>TIGR03070 couple_hipB transcriptional regulator, y4mF family | Back alignment and domain information |
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>PRK12528 RNA polymerase sigma factor; Provisional | Back alignment and domain information |
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>PRK12523 RNA polymerase sigma factor; Reviewed | Back alignment and domain information |
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>COG1476 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
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>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; InterPro: IPR014322 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription | Back alignment and domain information |
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>pfam06250 DUF1016 Protein of unknown function (DUF1016) | Back alignment and domain information |
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>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor; InterPro: IPR014209 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription | Back alignment and domain information |
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>pfam11300 DUF3102 Protein of unknown function (DUF3102) | Back alignment and domain information |
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>pfam03235 DUF262 Protein of unknown function DUF262 | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
1vz0_A | 230 | Chromosome Segregation Protein Spo0j From Thermus T | 7e-16 |
>gi|51247949|pdb|1VZ0|A Chain A, Chromosome Segregation Protein Spo0j From Thermus Thermophilus Length = 230 | Back alignment and structure |
Score = 89.0 bits (218), Expect = 7e-16, Method: Composition-based stats. Identities = 88/209 (42%), Positives = 126/209 (60%), Gaps = 18/209 (8%) Query: 1 MSNNYSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFES 60 MS S LGRGL AL+ + + SI PNP PR F Sbjct: 1 MSRKPS--GLGRGLEALLP--------------KTGAGVVRLPLASIRPNPRQPRKRFAE 44 Query: 61 EGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKS 120 E L++L SI+ G++QPL+VR +G Y+++AGERR+RAA MA L EVP +++++ ++ Sbjct: 45 ESLKELADSIREKGLLQPLLVRPQGDG-YELVAGERRYRAALMAGLQEVPAVVKDLTDRE 103 Query: 121 SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180 +LE+A+VEN+QR+DL+P+EEA GY+ L E G TQ ++ VGK+RS VAN LR+L+LP Sbjct: 104 ALELALVENLQREDLSPVEEARGYQAL-LEMGLTQEEVARRVGKARSTVANALRLLQLPP 162 Query: 181 SVREMIRKEEISLGHARTLVSTSDPLSLA 209 E + + EI+ GHAR L+ L Sbjct: 163 EALEALERGEITAGHARALLMLEPEDRLW 191 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
1vz0_A | 230 | PARB, chromosome partitioning protein PARB; nuclear pro | 6e-40 | |
1vk1_A | 242 | Conserved hypothetical protein; reductive methylation, | 2e-31 | |
1r71_A | 178 | Transcriptional repressor protein KORB; INCP, plasmid p | 1e-30 | |
3mky_B | 189 | Protein SOPB; partition, F plasmid, centromere, DNA bin | 3e-26 | |
1zx4_A | 192 | P1 PARB, plasmid partition PAR B protein, PARB; transla | 7e-17 | |
1yzs_A | 121 | Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Ho | 7e-11 | |
1xw3_A | 110 | Sulfiredoxin; retroreduction, sulfinic acid, peroxiredo | 2e-09 |
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1 Length = 230 | Back alignment and structure |
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Score = 159 bits (404), Expect = 6e-40 Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 18/234 (7%) Query: 7 KRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDL 66 LGRGL AL+ + + + + SI PNP PR F E L++L Sbjct: 5 PSGLGRGLEALLPKTGAGVVR--------------LPLASIRPNPRQPRKRFAEESLKEL 50 Query: 67 CQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAI 126 SI+ G++QPL+VR +G Y+++AGERR+RAA MA L EVP +++++ ++ +LE+A+ Sbjct: 51 ADSIREKGLLQPLLVRPQGDG-YELVAGERRYRAALMAGLQEVPAVVKDLTDREALELAL 109 Query: 127 VENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186 VEN+QR+DL+P+EEA GY+ + E G TQ ++ VGK+RS VAN LR+L+LP E + Sbjct: 110 VENLQREDLSPVEEARGYQA-LLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEAL 168 Query: 187 RKEEISLGHARTLVSTSDP--LSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKK 238 + EI+ GHAR L+ L + I+ K +SVR E L + ++ + Sbjct: 169 ERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAE 222 |
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2 Length = 242 | Back alignment and structure |
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>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 Length = 178 | Back alignment and structure |
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>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A* Length = 189 | Back alignment and structure |
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>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A Length = 192 | Back alignment and structure |
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>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A* Length = 121 | Back alignment and structure |
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>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X* Length = 110 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
1vz0_A | 230 | PARB, chromosome partitioning protein PARB; nuclear pro | 100.0 | |
1vk1_A | 242 | Conserved hypothetical protein; reductive methylation, | 99.96 | |
1r71_A | 178 | Transcriptional repressor protein KORB; INCP, plasmid p | 99.93 | |
1vk1_A | 242 | Conserved hypothetical protein; reductive methylation, | 90.66 | |
3mky_B | 189 | Protein SOPB; partition, F plasmid, centromere, DNA bin | 99.85 | |
1zx4_A | 192 | P1 PARB, plasmid partition PAR B protein, PARB; transla | 99.79 | |
1yzs_A | 121 | Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Ho | 99.83 | |
1xw3_A | 110 | Sulfiredoxin; retroreduction, sulfinic acid, peroxiredo | 99.76 | |
2ict_A | 94 | Antitoxin HIGA; helix-turn-helix, structural genomics, | 94.8 | |
2a6c_A | 83 | Helix-turn-helix motif; putative transcriptional regula | 94.52 | |
1lmb_3 | 92 | Protein (lambda repressor); protein-DNA complex, double | 94.25 | |
2wiu_B | 88 | HTH-type transcriptional regulator HIPB; transferase tr | 94.12 | |
2o38_A | 120 | Hypothetical protein; alpha-beta, helix-turn-helix, str | 94.01 | |
2kpj_A | 94 | SOS-response transcriptional repressor, LEXA; NESG, GFT | 94.0 | |
2w48_A | 315 | Sorbitol operon regulator; SORC, activator, repressor, | 93.85 | |
3cec_A | 104 | Putative antidote protein of plasmid maintenance system | 93.65 | |
2fjr_A | 189 | Repressor protein CI; genetic switch, regulation, coope | 93.62 | |
3o9x_A | 133 | Uncharacterized HTH-type transcriptional regulato; HTH- | 93.58 | |
1u78_A | 141 | TC3 transposase, transposable element TC3 transposase; | 93.56 | |
3b7h_A | 78 | Prophage LP1 protein 11; structural genomics, PSI2, MCS | 93.27 | |
3eus_A | 86 | DNA-binding protein; structural genomics, PSI2,MCSG, pr | 93.19 | |
1y7y_A | 74 | C.AHDI; helix-turn-helix, DNA-binding protein, transcri | 93.16 | |
2b5a_A | 77 | C.BCLI; helix-turn-helix motif, gene regulation; 1.54A | 93.12 | |
3bdn_A | 236 | Lambda repressor; repressor, allostery; HET: DNA; 3.91A | 93.11 | |
3kz3_A | 80 | Repressor protein CI; five helix bundle, DNA-binding, t | 93.06 | |
3ivp_A | 126 | Putative transposon-related DNA-binding protein; APC626 | 93.04 | |
1b0n_A | 111 | Protein (SINR protein); transcription regulator, antago | 92.98 | |
3bs3_A | 76 | Putative DNA-binding protein; XRE-family, structural ge | 92.97 | |
2auw_A | 170 | Hypothetical protein NE0471; alpha-beta structure, stru | 92.89 | |
3fmy_A | 73 | HTH-type transcriptional regulator MQSA (YGIT/B3021); h | 92.82 | |
1x57_A | 91 | Endothelial differentiation-related factor 1; HMBF1alph | 92.75 | |
3op9_A | 114 | PLI0006 protein; structural genomics, PSI-2, protein st | 92.71 | |
1utx_A | 66 | CYLR2; DNA-binding protein, transcriptional repressor, | 92.33 | |
3clc_A | 82 | Regulatory protein; protein-DNA complex, transcriptiona | 92.32 | |
3f52_A | 117 | CLP gene regulator (CLGR); helix-turn-helix motif, tran | 92.22 | |
2ppx_A | 99 | AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif | 92.21 | |
1jko_C | 52 | HIN recombinase, DNA-invertase HIN; water-mediated reco | 92.05 | |
3f6w_A | 83 | XRE-family like protein; helix-turn-helix, DNA binding | 91.93 | |
3omt_A | 73 | Uncharacterized protein; structural genomics, PSI-2, pr | 91.86 | |
1adr_A | 76 | P22 C2 repressor; transcription regulation; NMR {Entero | 91.83 | |
2ef8_A | 84 | C.ECOT38IS, putative transcription factor; helix-turn-h | 91.83 | |
1r69_A | 69 | Repressor protein CI; gene regulating protein; 2.00A {P | 91.71 | |
1zug_A | 71 | Phage 434 CRO protein; gene regulating protein, transcr | 91.7 | |
2l49_A | 99 | C protein; P2 bacteriophage, P2 C, direct repeats, DNA- | 91.61 | |
2ewt_A | 71 | BLDD, putative DNA-binding protein; the DNA-binding dom | 91.6 | |
3g5g_A | 99 | Regulatory protein; transcriptional regulator, helix-tu | 91.55 | |
3mlf_A | 111 | Transcriptional regulator; structural genomics, helix-t | 91.39 | |
2eby_A | 113 | Putative HTH-type transcriptional regulator YBAQ; hypot | 91.38 | |
2jvl_A | 107 | TRMBF1; coactivator, helix-turn-helix, Pro binding, tra | 91.36 | |
2bnm_A | 198 | Epoxidase; oxidoreductase, cupin, HTH, cation-dependant | 91.05 | |
2p5t_A | 158 | Putative transcriptional regulator PEZA; postsegregatio | 90.77 | |
3kxa_A | 141 | NGO0477 protein, putative uncharacterized protein; NEW | 90.58 | |
1y9q_A | 192 | Transcriptional regulator, HTH_3 family; transcriptiona | 90.47 | |
2r1j_L | 68 | Repressor protein C2; protein-DNA complex, helix-turn-h | 90.21 | |
2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged helix | 90.95 |
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=368.81 Aligned_cols=215 Identities=42% Similarity=0.697 Sum_probs=197.4 Q ss_pred CHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC Q ss_conf 02221255868733776543342100001345660240389823578999876898899999998863100155046205 Q gi|254780805|r 5 YSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI 84 (300) Q Consensus 5 ~~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~ 84 (300) .+.++|||||+||+|... .++.+|||+.|+|||+|||+.|+++.+++|++||+.+|++|||+|+|. T Consensus 3 ~~~~~~~~~l~~l~~~~~--------------~~~~~Ipl~~I~~~p~npR~~~~~~~i~eLa~SI~~~G~l~Pi~v~~~ 68 (230) T 1vz0_A 3 RKPSGLGRGLEALLPKTG--------------AGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQ 68 (230) T ss_dssp ----------------------------------CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEE T ss_pred CCCCCCCCCHHHHCCCCC--------------CCEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 887878767788668987--------------865885799876698999986999999999999998188576389850 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 65445333575677777642100135433346411234556665431022104899999998521011104679999743 Q gi|254780805|r 85 DNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGK 164 (300) Q Consensus 85 ~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~ 164 (300) ++ .|+||+|||||+||+.+|+++|||+|++++|.++..++++||+||++|+|+|+|.+|+++.+ +|+|++++|+++|+ T Consensus 69 ~~-~y~ii~G~rR~~Aa~~lg~~~ip~~V~~~~d~~~~~~~l~eN~~R~~lsp~e~a~~~~~l~~-~g~t~~~iA~~lg~ 146 (230) T 1vz0_A 69 GD-GYELVAGERRYRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLE-MGLTQEEVARRVGK 146 (230) T ss_dssp TT-EEEEEECHHHHHHHHHHTCSEEEEEECCCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH-TTCCHHHHHHHHTC T ss_pred CC-EEEEECHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHCC T ss_conf 98-48996209999999987998016698418819999999998866058988999999999988-41899999988099 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC Q ss_conf 3787786565654358999987642101677777640100--4689999742224778999999764102222 Q gi|254780805|r 165 SRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQVIVSKKMSVRDTEELVQEQDNKKEK 235 (300) Q Consensus 165 s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~~Ii~~~LSVRe~E~lVk~~~~~~~~ 235 (300) |++||+++|+|++||+++++++.+|.|+.+||++|..+++ |..++..|+.++||+|++|++++++...... T Consensus 147 s~~~V~~~l~L~~Lp~~i~~~~~~g~it~~~a~~l~~l~~~~q~~~~~~i~~~~ls~rq~e~l~~~l~~~pk~ 219 (230) T 1vz0_A 147 ARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKR 219 (230) T ss_dssp CHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCCCHHHHCC----------- T ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC T ss_conf 9999999998751899999999859999899999872998999999999998499999999999986418998 |
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2 | Back alignment and structure |
---|
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 | Back alignment and structure |
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>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2 | Back alignment and structure |
---|
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A* | Back alignment and structure |
---|
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A | Back alignment and structure |
---|
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A* | Back alignment and structure |
---|
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X* | Back alignment and structure |
---|
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A | Back alignment and structure |
---|
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 | Back alignment and structure |
---|
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A* | Back alignment and structure |
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>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* | Back alignment and structure |
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>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13 | Back alignment and structure |
---|
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} | Back alignment and structure |
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>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} | Back alignment and structure |
---|
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} | Back alignment and structure |
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>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A | Back alignment and structure |
---|
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* | Back alignment and structure |
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>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 | Back alignment and structure |
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>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
---|
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} | Back alignment and structure |
---|
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 | Back alignment and structure |
---|
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 | Back alignment and structure |
---|
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} | Back alignment and structure |
---|
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} | Back alignment and structure |
---|
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} | Back alignment and structure |
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>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 | Back alignment and structure |
---|
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
---|
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1 | Back alignment and structure |
---|
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} | Back alignment and structure |
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>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12 | Back alignment and structure |
---|
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua} | Back alignment and structure |
---|
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A | Back alignment and structure |
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>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} | Back alignment and structure |
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>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A | Back alignment and structure |
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>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3 | Back alignment and structure |
---|
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C | Back alignment and structure |
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>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} | Back alignment and structure |
---|
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
---|
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 | Back alignment and structure |
---|
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} | Back alignment and structure |
---|
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A | Back alignment and structure |
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>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* | Back alignment and structure |
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>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A | Back alignment and structure |
---|
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} | Back alignment and structure |
---|
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A | Back alignment and structure |
---|
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp} | Back alignment and structure |
---|
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} | Back alignment and structure |
---|
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei} | Back alignment and structure |
---|
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A | Back alignment and structure |
---|
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} | Back alignment and structure |
---|
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae} | Back alignment and structure |
---|
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 | Back alignment and structure |
---|
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L | Back alignment and structure |
---|
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
300 | chromosome partitioning protein B [Candidatus Liberibac | |||
d1vk1a_ | 232 | d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus | 4e-35 | |
d1vz0a2 | 93 | d.268.1.1 (A:23-115) Putative partitioning protein ParB | 1e-17 | |
d1xw3a1 | 110 | d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) | 2e-10 | |
d1r71a_ | 114 | a.4.14.1 (A:) Transcriptional repressor protein KorB DN | 6e-17 | |
d1vz0a1 | 93 | a.4.14.1 (A:116-208) Putative partitioning protein ParB | 2e-15 |
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]} Length = 232 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: ParB/Sulfiredoxin superfamily: ParB/Sulfiredoxin family: Hypothetical protein PF0380 domain: Hypothetical protein PF0380 species: Pyrococcus furiosus [TaxId: 2261] Score = 142 bits (359), Expect = 4e-35 Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 22/214 (10%) Query: 42 ISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFR 99 + I + P LED +S+ GI ++ A Y I+ G R+ Sbjct: 6 VEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWA 65 Query: 100 AAKMASLSEVPVIIRNVDNKS-----------SLEIAIVENVQRKDLNPLEEALGYEQLI 148 + P +I + ++ ++E ++ + L +E+ E+ Sbjct: 66 GLQKLGAKRAPSVILDYFDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAE 125 Query: 149 SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSV-REMIRKEEISLGHARTLVSTSDPL- 206 +++G+ + L K S V EM + +EI L + + Sbjct: 126 -----KGEIAFALIGEKSFAIPGGLEEQKKVSKVLDEMDQAKEIELVYYGLKEDAKADME 180 Query: 207 --SLAQVIVSKKMSVRDTEELVQEQDNKKEKRKK 238 + V + K + + ELV+ + K + Sbjct: 181 KGEIDYVFIRKAPTKEEVMELVKRGEVFSPKTTR 214 |
>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Length = 93 | Back information, alignment and structure |
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>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
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>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Length = 114 | Back information, alignment and structure |
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>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Length = 93 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
d1vk1a_ | 232 | Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId | 100.0 | |
d1vz0a2 | 93 | Putative partitioning protein ParB/Spo0J {Thermus therm | 99.94 | |
d1xw3a1 | 110 | Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
d2hwja1 | 201 | Hypothetical protein Atu1540 {Agrobacterium tumefaciens | 90.72 | |
d1vz0a1 | 93 | Putative partitioning protein ParB/Spo0J {Thermus therm | 99.92 | |
d1r71a_ | 114 | Transcriptional repressor protein KorB DNA-binding doma | 99.68 | |
d2o38a1 | 89 | Hypothetical protein RPA3824 {Rhodopseudomonas palustri | 95.08 | |
d1ic8a2 | 94 | Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo s | 94.82 | |
d2icta1 | 87 | Antitoxin HigA {Escherichia coli [TaxId: 562]} | 94.44 | |
d1ijwc_ | 47 | HIN recombinase (DNA-binding domain) {Synthetic} | 94.25 | |
d2a6ca1 | 69 | HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: | 94.07 | |
d2auwa1 | 67 | Hypothetical protein NE0471 C-terminal domain {Nitrosom | 93.91 | |
d1y7ya1 | 69 | Restriction-modification controller protein C.AhdI {Aer | 93.78 | |
d1lmb3_ | 87 | lambda C1 repressor, DNA-binding domain {Bacteriophage | 93.13 | |
d1x57a1 | 78 | Endothelial differentiation-related factor 1, EDF1 {Hum | 93.12 | |
d2ppxa1 | 62 | Uncharacterized protein Atu1735 {Agrobacterium tumefaci | 93.08 | |
d2b5aa1 | 77 | Regulatory protein C.BclI {Bacillus caldolyticus [TaxId | 92.94 | |
d1b0na2 | 68 | SinR repressor, DNA-binding domain {Bacillus subtilis [ | 92.89 | |
d2r1jl1 | 66 | P22 C2 repressor, DNA-binding domain {Salmonella bacter | 92.55 | |
d2croa_ | 65 | cro 434 {Bacteriophage 434 [TaxId: 10712]} | 92.49 | |
d1y9qa1 | 79 | Probable transcriptional regulator VC1968, N-terminal d | 92.01 | |
d1r69a_ | 63 | 434 C1 repressor, DNA-binding domain {Bacteriophage 434 | 91.99 | |
d1utxa_ | 66 | Putative transcription regulator CylR2 {Enterococcus fa | 91.94 | |
d1hlva1 | 66 | DNA-binding domain of centromere binding protein B (CEN | 91.72 | |
d1rp3a2 | 71 | Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: | 91.19 |
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: ParB/Sulfiredoxin superfamily: ParB/Sulfiredoxin family: Hypothetical protein PF0380 domain: Hypothetical protein PF0380 species: Pyrococcus furiosus [TaxId: 2261] Probab=100.00 E-value=1e-37 Score=259.42 Aligned_cols=190 Identities=18% Similarity=0.184 Sum_probs=161.9 Q ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 024038982357899987689889999999886310015504620--565445333575677777642100135433346 Q gi|254780805|r 39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRA--IDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV 116 (300) Q Consensus 39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~--~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~ 116 (300) +..+++..|.++++|||..|+++.+++|+.||+++|+++|++|++ .+++.|+||+|||||+||+.+|+++|||+|.|+ T Consensus 3 v~~ie~~~i~~~~l~P~~~~~~~~l~~L~~sI~~~G~~~ppivv~~~~~~~~y~Ii~G~~R~~Aak~lG~~~IP~iv~d~ 82 (232) T d1vk1a_ 3 VKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDY 82 (232) T ss_dssp EECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECT T ss_pred CEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCEEEEEC T ss_conf 43355157642128898668999999999999980987898898405899877999528999999987998567899837 Q ss_pred CCHHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H Q ss_conf 4112345-----------566654310221048999999985210111046799997433787786565654358999-9 Q gi|254780805|r 117 DNKSSLE-----------IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR-E 184 (300) Q Consensus 117 ~d~~~~~-----------~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~-~ 184 (300) +|++... .+++||+||++|+|+|+|.+|+++. +++..++.+|+++++|+|.+++++++..++ . T Consensus 83 ~de~~~~~~~~~~~~~~~~~~ien~~r~~l~~ieea~~~~~~~-----~~~~~~~~~gk~~~~i~~~lr~~~l~~~~l~~ 157 (232) T d1vk1a_ 83 FDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAE-----KGEIAFALIGEKSFAIPGGLEEQKKVSKVLDE 157 (232) T ss_dssp TSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHH-----TTSSSEEEESSSEEEECCSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9778887654201301467899999987565766653035665-----78899998473088774057765508999999 Q ss_pred HHHHHHCCHHHHHHHHHCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 87642101677777640100---46899997422247789999997641022 Q gi|254780805|r 185 MIRKEEISLGHARTLVSTSD---PLSLAQVIVSKKMSVRDTEELVQEQDNKK 233 (300) Q Consensus 185 ~l~~~~is~ghar~Ll~~~~---~~~la~~Ii~~~LSVRe~E~lVk~~~~~~ 233 (300) +...|.++.+|++++....+ +.+++..++.+.||||++|++|++..... T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~lsvre~e~~vk~~~~~~ 209 (232) T d1vk1a_ 158 MDQAKEIELVYYGLKEDAKADMEKGEIDYVFIRKAPTKEEVMELVKRGEVFS 209 (232) T ss_dssp HHHTTSSEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBS T ss_pred HHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC T ss_conf 9862213187552435455678765599999864799999999998356689 |
>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
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>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} | Back information, alignment and structure |
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>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
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>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
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>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} | Back information, alignment and structure |
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>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} | Back information, alignment and structure |
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>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} | Back information, alignment and structure |
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>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} | Back information, alignment and structure |
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>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} | Back information, alignment and structure |
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>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} | Back information, alignment and structure |
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>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 300 | chromosome partitioning protein B [Candidatus Libe | ||
1yzs_A_ | 121 | (A:) Sulfiredoxin; PARB domain fold, oxidoreductas | 3e-23 | |
1vz0_A_1-99 | 99 | (A:1-99) PARB, chromosome partitioning protein PAR | 9e-23 | |
1xw3_A_ | 110 | (A:) Sulfiredoxin; retroreduction, sulfinic acid, | 2e-15 | |
1r71_A_1-76 | 76 | (A:1-76) Transcriptional repressor protein KORB; I | 1e-20 | |
1vz0_A_100-158 | 59 | (A:100-158) PARB, chromosome partitioning protein | 1e-15 | |
1vk1_A_1-93_228-242 | 108 | (A:1-93,A:228-242) Conserved hypothetical protein; | 1e-18 | |
1zx4_A_1-81 | 81 | (A:1-81) P1 PARB, plasmid partition PAR B protein, | 1e-16 | |
1vz0_A_159-230 | 72 | (A:159-230) PARB, chromosome partitioning protein | 4e-13 |
>1yzs_A (A:) Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens}Length = 121 | Back alignment and structure |
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Score = 103 bits (258), Expect = 3e-23 Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 20/133 (15%) Query: 6 SKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLED 65 + G A G ++ +P + + P + ++ Sbjct: 2 APEGPGPSGGAQGGSIH---SGRIAAVHNVP-------LSVL--IRPLPSV-LDPAKVQS 48 Query: 66 LCQSIKSHGIIQPLIVR-----AIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV--DN 118 L +I+ P I A + G R+ A + +P + + Sbjct: 49 LVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSD 108 Query: 119 KSSLEIAIVENVQ 131 A ++Q Sbjct: 109 LRVYLGASTPDLQ 121 |
>1vz0_A (A:1-99) PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus}Length = 99 | Back alignment and structure |
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>1xw3_A (A:) Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens}Length = 110 | Back alignment and structure |
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>1r71_A (A:1-76) Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli}Length = 76 | Back alignment and structure |
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>1vz0_A (A:100-158) PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus}Length = 59 | Back alignment and structure |
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>1vk1_A (A:1-93,A:228-242) Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus}Length = 108 | Back alignment and structure |
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>1zx4_A (A:1-81) P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_ALength = 81 | Back alignment and structure |
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>1vz0_A (A:159-230) PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus}Length = 72 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 300 | chromosome partitioning protein B [Candidatus Liberibac | ||
1yzs_A_ | 121 | Sulfiredoxin; PARB domain fold, oxidoreductase; NM | 99.88 | |
1vz0_A_1-99 | 99 | PARB, chromosome partitioning protein PARB; nuclea | 99.84 | |
1vk1_A_1-93_228-242 | 108 | Conserved hypothetical protein; reductive methylat | 99.8 | |
1xw3_A_ | 110 | Sulfiredoxin; retroreduction, sulfinic acid, perox | 99.8 | |
2hwj_A_ | 205 | AGR_C_2837P, hypothetical protein ATU1540; structu | 96.95 | |
1r71_A_1-76 | 76 | Transcriptional repressor protein KORB; INCP, plas | 99.73 | |
1vz0_A_100-158 | 59 | PARB, chromosome partitioning protein PARB; nuclea | 99.46 | |
2h8r_A_1-122 | 122 | Hepatocyte nuclear factor 1-beta; trasncription fa | 94.82 | |
1ic8_A_1-85 | 85 | Hepatocyte nuclear factor 1-alpha; transcription r | 94.71 | |
1zx4_A_1-81 | 81 | P1 PARB, plasmid partition PAR B protein, PARB; tr | 99.65 | |
2o38_A_ | 120 | Hypothetical protein; alpha-beta, helix-turn-helix | 94.19 | |
2kpj_A_ | 94 | SOS-response transcriptional repressor, LEXA; NESG | 93.97 | |
2fjr_A_1-70 | 70 | Repressor protein CI; genetic switch, regulation, | 93.82 | |
3f52_A_ | 117 | CLP gene regulator (CLGR); helix-turn-helix motif, | 93.46 | |
3fmy_A_ | 73 | HTH-type transcriptional regulator MQSA (YGIT/B302 | 93.12 | |
2wiu_B_ | 88 | HTH-type transcriptional regulator HIPB; transfera | 93.06 | |
1zug_A_ | 71 | Phage 434 CRO protein; gene regulating protein, tr | 92.48 | |
1adr_A_ | 76 | P22 C2 repressor; transcription regulation; NMR {B | 92.32 | |
3gn5_A_72-133 | 62 | HTH-type transcriptional regulator MQSA (YGIT/B302 | 91.86 | |
2p5t_A_ | 158 | Putative transcriptional regulator PEZA; postsegre | 90.84 | |
2ofy_A_ | 86 | Putative XRE-family transcriptional regulator; tra | 90.73 | |
1vz0_A_159-230 | 72 | PARB, chromosome partitioning protein PARB; nuclea | 99.39 | |
2a6c_A_ | 83 | Helix-turn-helix motif; NP_841403.1, , structural | 94.06 | |
3ivp_A_1-73 | 73 | Putative transposon-related DNA-binding protein; A | 94.03 | |
2w48_A_1-54 | 54 | Sorbitol operon regulator; SORC, activator, repres | 93.74 | |
3g5g_A_ | 99 | Regulatory protein; transcriptional regulator, hel | 93.74 | |
2r1j_L_ | 68 | Repressor protein C2; protein-DNA complex, helix-t | 93.62 | |
2p8t_A_ | 200 | Hypothetical protein PH0730; structural genomics, | 93.37 | |
1b0n_A_1-65 | 65 | Protein (SINR protein); transcription regulator, a | 93.35 | |
2ef8_A_ | 84 | C.ECOT38IS, putative transcription factor; helix-t | 93.34 | |
1lmb_3_ | 92 | Protein (lambda repressor); protein-DNA complex, d | 93.26 | |
1r69_A_ | 69 | Repressor protein CI; gene regulating protein; 2.0 | 93.16 | |
1y9q_A_1-76 | 76 | Transcriptional regulator, HTH_3 family; transcrip | 93.15 | |
3eus_A_ | 86 | DNA-binding protein; structural genomics, PSI2,MCS | 93.12 | |
1x57_A_ | 91 | Endothelial differentiation-related factor 1; HMBF | 93.01 | |
3kz3_A_ | 80 | Repressor protein CI; five helix bundle, DNA-bindi | 92.94 | |
3cec_A_1-56 | 56 | Putative antidote protein of plasmid maintenance s | 92.81 | |
2ict_A_1-46 | 46 | Antitoxin HIGA; helix-turn-helix, structural genom | 92.67 | |
3b7h_A_ | 78 | Prophage LP1 protein 11; structural genomics, PSI2 | 92.62 | |
3f6w_A_ | 83 | XRE-family like protein; helix-turn-helix, DNA bin | 92.55 | |
3clc_A_ | 82 | Regulatory protein; protein-DNA complex, transcrip | 92.45 | |
1y7y_A_ | 74 | C.AHDI; helix-turn-helix, DNA-binding protein, tra | 92.39 | |
2eby_A_1-96 | 96 | Putative HTH-type transcriptional regulator YBAQ; | 92.37 | |
2jvl_A_ | 107 | TRMBF1; coactivator, helix-turn-helix, protein bin | 92.35 | |
2b5a_A_ | 77 | C.BCLI; helix-turn-helix motif, gene regulation; 1 | 92.23 | |
1utx_A_ | 66 | CYLR2; DNA-binding protein, transcriptional repres | 92.12 | |
2ppx_A_1-68 | 68 | AGR_C_3184P, uncharacterized protein ATU1735; HTH- | 91.82 | |
1jko_C_ | 52 | HIN recombinase, DNA-invertase HIN; water-mediated | 91.8 | |
2ewt_A_ | 71 | BLDD, putative DNA-binding protein; the DNA-bindin | 91.61 | |
3fym_A_ | 130 | Putative uncharacterized protein; HTH DNA binding, | 91.53 | |
3bs3_A_ | 76 | Putative DNA-binding protein; XRE-family, structur | 91.37 | |
3hef_A_ | 143 | Gene 1 protein; bacteriophage SF6, terminase small | 90.51 |
>1yzs_A (A:) Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} | Back alignment and structure |
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Probab=99.88 E-value=4.3e-23 Score=167.97 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=95.1 Q ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC- Q ss_conf 2221255868733776543342100001345660240389823578999876898899999998863100155046205- Q gi|254780805|r 6 SKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI- 84 (300) Q Consensus 6 ~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~- 84 (300) +.+++|+||++++++.... ....+..||+++|.|+ |||. |+++.+++|++||+++|+++|++|++. T Consensus 2 ~~~~~g~~l~~~~~~~~~~----------~~~~~~~ipl~~i~~~--~~r~-~~~~~~~~L~~sI~~~G~~~p~iv~~~~ 68 (121) T 1yzs_A 2 APEGPGPSGGAQGGSIHSG----------RIAAVHNVPLSVLIRP--LPSV-LDPAKVQSLVDTIREDPDSVPPIDVLWI 68 (121) T ss_dssp CCCCSSSCSSSCSSCCCSS----------CCCCEEEEEGGGEECC--CCCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCC----------CCCCEEECCHHHCCCC--CCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 8999897667789886568----------7672267689995689--9997-8989999999999975410684225501 Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH--HHHHHHHHHH Q ss_conf ----6544533357567777764210013543334641123--4556665431 Q gi|254780805|r 85 ----DNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSS--LEIAIVENVQ 131 (300) Q Consensus 85 ----~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~--~~~~l~EN~~ 131 (300) ++|.|+|++|||||+|++.+|+++|||+|.+++++++ +.++++||+| T Consensus 69 ~~~~~~~~y~ii~G~~R~~Aa~~lg~~~Ip~~v~d~~~~~~~~~~~~~~eN~q 121 (121) T 1yzs_A 69 KGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ 121 (121) T ss_dssp ECTTSCEEEECCSCHHHHHHHHHTTCSEEEEEEEECCHHHHHHHHTTTCCCCC T ss_pred CCCCCCCEEEEEECHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCC T ss_conf 23678970899636899999998398833689997999999999752372349 |
>1vz0_A (A:1-99) PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} | Back alignment and structure |
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>1vk1_A (A:1-93,A:228-242) Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} | Back alignment and structure |
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>1xw3_A (A:) Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} | Back alignment and structure |
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>2hwj_A (A:) AGR_C_2837P, hypothetical protein ATU1540; structural genomics, PSI-2, protein structure initiative; 2.61A {Agrobacterium tumefaciens str} | Back alignment and structure |
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>1r71_A (A:1-76) Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} | Back alignment and structure |
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>1vz0_A (A:100-158) PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} | Back alignment and structure |
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>2h8r_A (A:1-122) Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} | Back alignment and structure |
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>1ic8_A (A:1-85) Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} | Back alignment and structure |
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>1zx4_A (A:1-81) P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A | Back alignment and structure |
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>2o38_A (A:) Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} | Back alignment and structure |
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>2kpj_A (A:) SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} | Back alignment and structure |
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>2fjr_A (A:1-70) Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A | Back alignment and structure |
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>3f52_A (A:) CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A | Back alignment and structure |
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>3fmy_A (A:) HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} | Back alignment and structure |
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>2wiu_B (B:) HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* | Back alignment and structure |
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>1zug_A (A:) Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} | Back alignment and structure |
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>1adr_A (A:) P22 C2 repressor; transcription regulation; NMR {Bacteriophage P22} | Back alignment and structure |
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>3gn5_A (A:72-133) HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* | Back alignment and structure |
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>2p5t_A (A:) Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} | Back alignment and structure |
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>2ofy_A (A:) Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} | Back alignment and structure |
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>1vz0_A (A:159-230) PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} | Back alignment and structure |
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>2a6c_A (A:) Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} | Back alignment and structure |
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>3ivp_A (A:1-73) Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} | Back alignment and structure |
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>2w48_A (A:1-54) Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} | Back alignment and structure |
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>3g5g_A (A:) Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A | Back alignment and structure |
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>2r1j_L (L:) Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} | Back alignment and structure |
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>2p8t_A (A:) Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} | Back alignment and structure |
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>1b0n_A (A:1-65) Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} | Back alignment and structure |
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>2ef8_A (A:) C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} | Back alignment and structure |
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>1lmb_3 (3:) Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} | Back alignment and structure |
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>1r69_A (A:) Repressor protein CI; gene regulating protein; 2.00A {Phage 434} | Back alignment and structure |
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>1y9q_A (A:1-76) Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} | Back alignment and structure |
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>3eus_A (A:) DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} | Back alignment and structure |
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>1x57_A (A:) Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
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>3kz3_A (A:) Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} | Back alignment and structure |
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>3cec_A (A:1-56) Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} | Back alignment and structure |
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>2ict_A (A:1-46) Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} | Back alignment and structure |
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>3b7h_A (A:) Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
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>3f6w_A (A:) XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} | Back alignment and structure |
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>3clc_A (A:) Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} | Back alignment and structure |
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>1y7y_A (A:) C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} | Back alignment and structure |
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>2eby_A (A:1-96) Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} | Back alignment and structure |
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>2jvl_A (A:) TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} | Back alignment and structure |
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>2b5a_A (A:) C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} | Back alignment and structure |
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>1utx_A (A:) CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} | Back alignment and structure |
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>2ppx_A (A:1-68) AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} | Back alignment and structure |
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>1jko_C (C:) HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} | Back alignment and structure |
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>2ewt_A (A:) BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} | Back alignment and structure |
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>3fym_A (A:) Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} | Back alignment and structure |
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>3bs3_A (A:) Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
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>3hef_A (A:) Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} | Back alignment and structure |
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