HHsearch alignment for GI: 254780805 and conserved domain: COG1475
>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription].
Probab=100.00 E-value=2.7e-39 Score=272.48 Aligned_cols=233 Identities=39% Similarity=0.634 Sum_probs=212.5
Q ss_pred CCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 60240389823578999876898899999998863100155046205654453335756777776421001354333464
Q gi|254780805|r 38 SQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVD 117 (300)
Q Consensus 38 ~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~ 117 (300)
T Consensus 3 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~l~~SI~~~G~~~Pi~v~~----~yeiv~G~rR~~Aa~~~g~~~vp~iv~~~~ 78 (240)
T COG1475 3 RVVEIDIVLIAPNPLQPRKKFDEESLEELAASIKEFGLIQPIVVRP----RYEIVDGHRRLRAAKLLGLEEVPVIVRDLE 78 (240)
T ss_pred CCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEECC----EEEEECCCHHHHHHHHCCCCCCCEEEECCC
T ss_conf 6442467664667666644377577999999999839816857777----248842709999999738776874883466
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 1123455666543102210489999-999852101110467999974337877865656543589999876421016777
Q gi|254780805|r 118 NKSSLEIAIVENVQRKDLNPLEEAL-GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA 196 (300)
Q Consensus 118 d~~~~~~~l~EN~~R~dl~p~e~A~-~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha 196 (300)
T Consensus 79 d~~~~~~~l~en~~r~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 158 (240)
T COG1475 79 DEKLLELSLAENIQREDLVPIEEALGAYYELIDGFGLTRERIAKALGKSRARISNLLPLAALPEEVVEALGRIALTIRHA 158 (240)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 58899998898525566767999877699887530455999998853017654202201347888887531001368898
Q ss_pred HHHHHCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 77640100---468999974222477899999976410222222345665568978999999999973987999717982
Q gi|254780805|r 197 RTLVSTSD---PLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNNK 273 (300)
Q Consensus 197 r~Ll~~~~---~~~la~~Ii~~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~~~~~k 273 (300)
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----~ 224 (240)
T COG1475 159 RALLSLLVEELMSEIVRELVKEGLSVRWIEKLVRALIKDA----------LEELGMDKDEKLRLKQISGLAVLIK----D 224 (240)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC----------CCCCCCHHHHHHHHHHHHCCHHHHC----C
T ss_conf 9987501245657999999861000345688887753011----------0124002889998867416044421----6
Q ss_pred EEEEEEECCHHHHHH
Q ss_conf 289998589899999
Q gi|254780805|r 274 GQFCIKYETNEQLKI 288 (300)
Q Consensus 274 GkI~I~f~s~eeLe~ 288 (300)
T Consensus 225 ~~~~~~~~~~~~~~~ 239 (240)
T COG1475 225 GKFSVAWESEEELER 239 (240)
T ss_pred CEEEEECCCHHHHHC
T ss_conf 702211154544512