HHsearch alignment for GI: 254780805 and conserved domain: PRK06811
>PRK06811 RNA polymerase factor sigma-70; Validated.
Probab=92.09 E-value=0.74 Score=25.48 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 21048999999985210111046799997433787786565-65435899998764210
Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR-ILKLPSSVREMIRKEEI 191 (300)
Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~~~i~~~l~~~~i 191 (300)
T Consensus 128 ~L~~~~r~v~~l~~~--~~~s~~EIA~~l~is~~tVk~rl~Rar~~Lr~~L~~~~~~e~ 184 (185)
T PRK06811 128 DLKKLDREIFIKRYL--LGESIEEIAKKLGLTRSAIDNRLSRGRKKLKNKLNILKKGEV 184 (185)
T ss_pred CCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899999999999999--499999999998929999999999999999999889866788