HHsearch alignment for GI: 254780805 and conserved domain: PRK06811

>PRK06811 RNA polymerase factor sigma-70; Validated.
Probab=92.09  E-value=0.74  Score=25.48  Aligned_cols=56  Identities=23%  Similarity=0.341  Sum_probs=36.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf             21048999999985210111046799997433787786565-65435899998764210
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR-ILKLPSSVREMIRKEEI  191 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~~~i~~~l~~~~i  191 (300)
T Consensus       128 ~L~~~~r~v~~l~~~--~~~s~~EIA~~l~is~~tVk~rl~Rar~~Lr~~L~~~~~~e~  184 (185)
T PRK06811        128 DLKKLDREIFIKRYL--LGESIEEIAKKLGLTRSAIDNRLSRGRKKLKNKLNILKKGEV  184 (185)
T ss_pred             CCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             899999999999999--499999999998929999999999999999999889866788