HHsearch alignment for GI: 254780805 and conserved domain: PRK13866
>PRK13866 plasmid partitioning protein RepB; Provisional.
Probab=99.95 E-value=1.5e-27 Score=197.02 Aligned_cols=153 Identities=25% Similarity=0.340 Sum_probs=139.4
Q ss_pred CCCCCCCCEEEEHHHCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCCCCCEEECCCC--CCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 0134566024038982357899987689-889999999886310015504620565--4453335756777776421001
Q gi|254780805|r 32 TETIPESQDCISIHSIVPNPHNPRNYFE-SEGLEDLCQSIKSHGIIQPLIVRAIDN--GLYKIIAGERRFRAAKMASLSE 108 (300)
Q Consensus 32 ~~~~~~~~~~i~i~~i~~~p~~pR~~~~-~~~l~eLa~SI~~~G~lqPi~Vr~~~~--g~y~ii~G~rR~rAa~~~g~~~ 108 (300)
T Consensus 58 qLa~G~~VVelDp~~Id~S~v~DRl~~d~d~~~~~L~~sI~~~GQ~vPILVRphp~~~gryqi~yG~RRl~A~~~Lg~-~ 136 (336)
T PRK13866 58 QLAAGEAVVSLDPSMIDGSPIADRLPSDVDPKFEQLEASISQDGQQVPILVRPHPEAAGRYQIVYGRRRLRAAVNLRR-E 136 (336)
T ss_pred HHHCCCEEEECCHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHCC-C
T ss_conf 985699489738664255310103778753799999999998398476685779888885663054899999998099-6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 35433346411234556665431022104899999998521011104679999743378778656565-4358999987
Q gi|254780805|r 109 VPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300)
Q Consensus 109 ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300)
T Consensus 137 VkA~Vr~L~D~~~v~aQG~EN~~R~dLSfIErAlFA~~l~~-~g~~r~~i~~aL~~dk~~lS~m~~v~~~iP~~~i~aI 214 (336)
T PRK13866 137 VSAIVRNLTDRELVVAQGRENLDRADLSFIEKALFALRLED-AGFDRATIIAALSTDKADLSRYITVARGIPLNLATQI 214 (336)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 33221148809999987645331234309999999999997-6998889999967888899999999997899999974