>TIGR00180 parB_part ParB-like partition proteins; InterPro: IPR004437 This group of chromosomal and plasmid partition proteins are related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.; GO: 0003677 DNA binding.

Probab=99.94 E-value=3.5e-26 Score=188.24 Aligned_cols=170 Identities=47% Similarity=0.794 Sum_probs=161.7 Q ss_pred CCCEEEEHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHCCCCCCCEEECCCC----CCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 66024038982357899987---689889999999886310015504620565----44533357567777764210013 Q gi|254780805|r 37 ESQDCISIHSIVPNPHNPRN---YFESEGLEDLCQSIKSHGIIQPLIVRAIDN----GLYKIIAGERRFRAAKMASLSEV 109 (300) Q Consensus 37 ~~~~~i~i~~i~~~p~~pR~---~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~----g~y~ii~G~rR~rAa~~~g~~~i 109 (300) T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 82 (192) T TIGR00180 3 GGLLELPLDLLDPNPYQPRKDNPGFSEESLEELLESIKEHGLLQPLLVRPAPDPHDPGRYEIIAGERRWRAAKLAGLKPV 82 (192) T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCCH T ss_conf 53011112232146565655675534567899988887620102101103665445551443212256778876311100 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- Q ss_conf 5433346411234556665431022104899999998521011104679999743378778656565435899998764- Q gi|254780805|r 110 PVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRK- 188 (300) Q Consensus 110 p~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~- 188 (300) T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (192) T TIGR00180 83 PAIVRELDDEQLLALALLENLQREDLSPLEEALAYKRLLEEFSLTQEDLAKKLGKSRAHVTNLLRLLDLPSEVQDALPEA 162 (192) T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHC T ss_conf 13321001577888887643332100157888899998876301388888874232568888888750537899874201 Q ss_pred -HHCCHHHHHHHHHCCHHH Q ss_conf -210167777764010046 Q gi|254780805|r 189 -EEISLGHARTLVSTSDPL 206 (300) Q Consensus 189 -~~is~ghar~Ll~~~~~~ 206 (300) T Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (192) T TIGR00180 163 PGLLSSGHARLLLALKKKP 181 (192) T ss_pred CHHHHHHHHHHHHHHCCCH T ss_conf 1122456888887630330

HHsearch alignment for GI: 254780805 and conserved domain: TIGR00180