HHsearch alignment for GI: 254780805 and conserved domain: TIGR03454
>TIGR03454 partition_RepB plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently.
Probab=100.00 E-value=2.5e-31 Score=221.28 Aligned_cols=153 Identities=23% Similarity=0.359 Sum_probs=142.0
Q ss_pred CCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC--CCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 01345660240389823578999876898899999998863100155046205--6544533357567777764210013
Q gi|254780805|r 32 TETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFRAAKMASLSEV 109 (300)
Q Consensus 32 ~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~--~~g~y~ii~G~rR~rAa~~~g~~~i 109 (300)
T Consensus 57 ~l~~G~~VvELDp~lId~S~v~DRl~~d~~~~~~L~~sI~~~Gq~~PilVRphp~~~gry~iv~G~RR~~A~~~lg~-~v 135 (325)
T TIGR03454 57 QLAEGETVVELDPALIDTSFVSDRLDSDEEAFAELVESIRENGQQVPILVRPHPEAEGRYQVAYGHRRLRAARDLGI-PV 135 (325)
T ss_pred HHHCCCEEEECCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECHHHHHHHHHCCC-CC
T ss_conf 87369948976988716665656777887999999999998298477697168888884788510899999998299-72
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 54333464112345566654310221048999999985210111046799997433787786565654-358999987
Q gi|254780805|r 110 PVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK-LPSSVREMI 186 (300)
Q Consensus 110 p~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~-L~~~i~~~l 186 (300)
T Consensus 136 ~A~vr~l~D~~~v~aqg~EN~~R~dLSfIErA~fA~~l~~-~g~~r~~I~~aL~vdks~lSrml~Va~~iP~elI~aI 212 (325)
T TIGR03454 136 KAVVRELSDEELVIAQGQENSARRDLSFIERALFAQRLED-RGFDRDTIMAALSVDKTELSRMISVARRIPEELIEAI 212 (325)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 0334579929999998876452146779999999999998-4999999999988899999999999997899999973