HHsearch alignment for GI: 254780805 and conserved domain: smart00470
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=99.87 E-value=1.2e-22 Score=165.43 Aligned_cols=89 Identities=47% Similarity=0.859 Sum_probs=84.3
Q ss_pred EEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 24038982357899987689889999999886310015504620565445333575677777642100135433346411
Q gi|254780805|r 40 DCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNK 119 (300)
Q Consensus 40 ~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~ 119 (300)
T Consensus 1 ~~i~i~~l~~~p~n~r~~-~~~~~~~L~~SI~~~G~~~Pi~v~~~~-~~y~ii~G~rR~~Aa~~lg~~~ip~~v~d~~~~ 78 (89)
T smart00470 1 VEVPIEKLRPNPDQPRLT-SEESLEELAESIKENGLLQPIIVRPND-GRYEIIDGERRLRAAKLLGLKEVPVIVRDLDDE 78 (89)
T ss_pred CEEEHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECC-CCEEECCCHHHHHHHHHCCCCCCEEEEEECCHH
T ss_conf 994189965498995989-999999999999982964776998539-956986878999999986998031999979999
Q ss_pred HHHHHHHHHHH
Q ss_conf 23455666543
Q gi|254780805|r 120 SSLEIAIVENV 130 (300)
Q Consensus 120 ~~~~~~l~EN~ 130 (300)
T Consensus 79 ~a~~~~~~eN~ 89 (89)
T smart00470 79 EAIALSLIENI 89 (89)
T ss_pred HHHHHHHHCCC
T ss_conf 99999987449