HHsearch alignment of GI: 254780805 and MMDB domain: 1y9q_A_1-76

>1y9q_A (A:1-76) Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae}
Probab=93.15  E-value=0.085  Score=31.11  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565654
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .-+..++.+....|+||.++|+++|.|+++|+++..=-.
T Consensus        11 ~~~~~lk~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~   49 (76)
T 1y9q_A           11 QIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGES   49 (76)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             999999999998299999999998949999999976997