HHsearch alignment of GI: 254780805 and MMDB domain: 2a6c_A_

>2a6c_A (A:) Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea}
Probab=94.06  E-value=0.065  Score=31.88  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999985210111046799997433787786565
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..-+.-++.+..+.|+||.++|+++|.|+++|+++.+
T Consensus        17 ~~i~~~lk~~r~~~gltq~elA~~~Gis~~~is~~e~   53 (83)
T 2a6c_A           17 SQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLXR   53 (83)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf             9999999999999699889999998557635558862