HHsearch alignment of GI: 254780805 and MMDB domain: 3fmy_A_

>3fmy_A (A:) HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=93.12  E-value=0.067  Score=31.79  Aligned_cols=39  Identities=13%  Similarity=0.082  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656565435
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      +..++++..+.|+||+++|+.+|.|+++|+++.+=-..|
T Consensus        13 g~~ir~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p   51 (73)
T 3fmy_A           13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXP   51 (73)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf             999999999869999999999798999999999499899