Query         gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs    186 out of 3259
Neff          6.5 
Searched_HMMs 33803
Date          Wed Jun  1 13:34:37 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780805.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1yzs_A Sulfiredoxin; PARB dom  99.9 4.3E-23 1.3E-27  168.0   5.8  113    6-131     2-121 (121)
  2 >1vz0_A PARB, chromosome parti  99.8 3.9E-22 1.1E-26  161.8   2.2   97    5-116     3-99  (99)
  3 >1vk1_A Conserved hypothetical  99.8 1.1E-20 3.2E-25  152.5   2.9   87   33-119     7-95  (108)
  4 >1xw3_A Sulfiredoxin; retrored  99.8 3.6E-20 1.1E-24  149.2   5.6   97   32-131     7-110 (110)
  5 >1r71_A Transcriptional repres  99.7 2.3E-18 6.7E-23  137.6   5.2   76   97-176     1-76  (76)
  6 >1zx4_A P1 PARB, plasmid parti  99.6 1.2E-16 3.6E-21  126.5   5.0   75  129-204     1-77  (81)
  7 >1vz0_A PARB, chromosome parti  99.5 7.3E-14 2.1E-18  108.7   5.6   59  117-176     1-59  (59)
  8 >1vz0_A PARB, chromosome parti  99.4 1.8E-13 5.3E-18  106.1   3.6   62  177-238     1-64  (72)
  9 >2hwj_A AGR_C_2837P, hypotheti  97.0  0.0012 3.6E-08   43.0   4.8   82   36-119     6-94  (205)
 10 >2h8r_A Hepatocyte nuclear fac  94.8   0.057 1.7E-06   32.2   5.1   55  118-174    12-66  (122)
 11 >1ic8_A Hepatocyte nuclear fac  94.7   0.058 1.7E-06   32.2   4.9   55  118-174    11-65  (85)
 12 >2o38_A Hypothetical protein;   94.2   0.059 1.7E-06   32.1   4.0   53  137-189    38-92  (120)
 13 >2a6c_A Helix-turn-helix motif  94.1   0.065 1.9E-06   31.9   4.0   37  138-174    17-53  (83)
 14 >3ivp_A Putative transposon-re  94.0   0.074 2.2E-06   31.5   4.3   44  134-177     7-50  (73)
 15 >2kpj_A SOS-response transcrip  94.0   0.069   2E-06   31.7   4.0   42  138-179     8-49  (94)
 16 >2fjr_A Repressor protein CI;   93.8   0.071 2.1E-06   31.6   3.9   48  139-186     6-54  (70)
 17 >2w48_A Sorbitol operon regula  93.7   0.088 2.6E-06   31.0   4.2   26  151-176    20-45  (54)
 18 >3g5g_A Regulatory protein; tr  93.7   0.062 1.8E-06   32.0   3.4   39  139-177    28-66  (99)
 19 >2r1j_L Repressor protein C2;   93.6   0.042 1.2E-06   33.1   2.4   39  138-176     4-42  (68)
 20 >3f52_A CLP gene regulator (CL  93.5   0.086 2.6E-06   31.1   3.8   51  137-187    26-77  (117)
 21 >2p8t_A Hypothetical protein P  93.4    0.12 3.5E-06   30.2   4.3   33  143-176    22-54  (200)
 22 >1b0n_A Protein (SINR protein)  93.4   0.079 2.3E-06   31.3   3.4   34  142-175     4-37  (65)
 23 >2ef8_A C.ECOT38IS, putative t  93.3    0.08 2.4E-06   31.3   3.4   36  140-175    11-46  (84)
 24 >1lmb_3 Protein (lambda repres  93.3   0.079 2.3E-06   31.3   3.3   36  140-175    18-53  (92)
 25 >1r69_A Repressor protein CI;   93.2   0.089 2.6E-06   31.0   3.5   34  141-174     3-36  (69)
 26 >1y9q_A Transcriptional regula  93.2   0.085 2.5E-06   31.1   3.4   39  139-177    11-49  (76)
 27 >3fmy_A HTH-type transcription  93.1   0.067   2E-06   31.8   2.8   39  141-179    13-51  (73)
 28 >3eus_A DNA-binding protein; s  93.1   0.082 2.4E-06   31.2   3.2   34  141-174    16-49  (86)
 29 >2wiu_B HTH-type transcription  93.1    0.14 4.2E-06   29.7   4.4   44  136-179     9-52  (88)
 30 >1x57_A Endothelial differenti  93.0    0.12 3.6E-06   30.1   4.0   40  137-176    11-50  (91)
 31 >3kz3_A Repressor protein CI;   92.9   0.086 2.5E-06   31.1   3.1   38  140-177    13-50  (80)
 32 >3cec_A Putative antidote prot  92.8     0.1   3E-06   30.6   3.3   39  136-174    15-53  (56)
 33 >2ict_A Antitoxin HIGA; helix-  92.7    0.11 3.3E-06   30.4   3.4   37  137-173     6-42  (46)
 34 >3b7h_A Prophage LP1 protein 1  92.6    0.11 3.2E-06   30.4   3.3   34  141-174     9-42  (78)
 35 >3f6w_A XRE-family like protei  92.6    0.11 3.4E-06   30.3   3.3   38  139-176    14-51  (83)
 36 >1zug_A Phage 434 CRO protein;  92.5   0.084 2.5E-06   31.1   2.6   46  141-186     5-50  (71)
 37 >3clc_A Regulatory protein; pr  92.4    0.13 3.8E-06   30.0   3.5   37  139-175    11-47  (82)
 38 >1y7y_A C.AHDI; helix-turn-hel  92.4    0.13 3.9E-06   29.9   3.4   36  139-174    13-48  (74)
 39 >2eby_A Putative HTH-type tran  92.4    0.13 3.8E-06   29.9   3.4   33  143-175    15-47  (96)
 40 >2jvl_A TRMBF1; coactivator, h  92.3    0.14 4.2E-06   29.7   3.6   34  144-177    41-74  (107)
 41 >1adr_A P22 C2 repressor; tran  92.3   0.088 2.6E-06   31.0   2.5   40  140-179     6-45  (76)
 42 >2b5a_A C.BCLI; helix-turn-hel  92.2    0.14 4.1E-06   29.7   3.4   35  140-174    11-45  (77)
 43 >1utx_A CYLR2; DNA-binding pro  92.1    0.11 3.3E-06   30.4   2.8   34  144-177     6-39  (66)
 44 >3gn5_A HTH-type transcription  91.9    0.12 3.6E-06   30.1   2.8   39  141-179     2-40  (62)
 45 >2ppx_A AGR_C_3184P, uncharact  91.8    0.13 3.7E-06   30.0   2.8   31  142-172    33-63  (68)
 46 >1jko_C HIN recombinase, DNA-i  91.8   0.093 2.7E-06   30.9   2.1   38  135-174     6-43  (52)
 47 >2ewt_A BLDD, putative DNA-bin  91.6    0.18 5.2E-06   29.1   3.4   39  139-177     8-48  (71)
 48 >3fym_A Putative uncharacteriz  91.5    0.17 4.9E-06   29.3   3.2   34  141-174     5-38  (130)
 49 >3bs3_A Putative DNA-binding p  91.4    0.16 4.7E-06   29.4   2.9   35  143-177    14-48  (76)
 50 >2p5t_A Putative transcription  90.8   0.051 1.5E-06   32.5   0.0   39  141-179     3-41  (158)
 51 >2ofy_A Putative XRE-family tr  90.7    0.32 9.6E-06   27.4   4.0   39  149-187    24-64  (86)
 52 >3hef_A Gene 1 protein; bacter  90.5    0.37 1.1E-05   27.0   4.2  119  138-287    18-141 (143)
 53 >1s7o_A Hypothetical UPF0122 p  89.5     1.1 3.1E-05   24.1   5.8   40  133-174    21-60  (73)
 54 >2o0m_A Transcriptional regula  88.9   0.091 2.7E-06   30.9   0.0   23  152-174    34-56  (345)
 55 >1ntc_A Protein (nitrogen regu  88.8    0.41 1.2E-05   26.8   3.3   34  143-176    55-88  (91)
 56 >1u78_A TC3 transposase, trans  88.5    0.61 1.8E-05   25.6   4.0   39  134-174     6-44  (53)
 57 >1tty_A Sigma-A, RNA polymeras  86.8    0.99 2.9E-05   24.3   4.3   42  133-174    17-60  (87)
 58 >1hlv_A CENP-B, major centrome  86.7       1   3E-05   24.2   4.3   55  132-189     5-59  (67)
 59 >1or7_A Sigma-24, RNA polymera  86.1    0.87 2.6E-05   24.6   3.7   40  134-175    24-63  (78)
 60 >1u2w_A CADC repressor, cadmiu  86.1    0.73 2.2E-05   25.1   3.3   35  143-177    20-54  (95)
 61 >1umq_A Photosynthetic apparat  85.9    0.92 2.7E-05   24.5   3.7   40  135-175    38-77  (81)
 62 >1r1t_A Transcriptional repres  85.9    0.97 2.9E-05   24.3   3.8   31  147-177    10-40  (78)
 63 >2q0o_A Probable transcription  85.5     1.2 3.6E-05   23.7   4.2   40  132-174     1-40  (64)
 64 >2ia0_A Putative HTH-type tran  85.2     1.4 4.1E-05   23.3   4.4   42  133-175    13-54  (66)
 65 >1uxc_A FRUR (1-57), fructose   85.2    0.83 2.4E-05   24.8   3.2   36  153-188     1-40  (65)
 66 >1xsv_A Hypothetical UPF0122 p  85.0     1.2 3.7E-05   23.6   4.0   41  133-175    24-64  (76)
 67 >2w25_A Probable transcription  84.8     1.3 3.8E-05   23.5   4.1   40  134-174     4-43  (56)
 68 >1rp3_A RNA polymerase sigma f  84.7     1.3 3.8E-05   23.5   4.0   40  133-174    97-136 (150)
 69 >1ku3_A Sigma factor SIGA; hel  84.4     1.4 4.3E-05   23.2   4.2   42  133-174     9-52  (73)
 70 >2zkz_A Transcriptional repres  84.3    0.93 2.7E-05   24.4   3.2   35  144-178    33-67  (99)
 71 >1bia_A BIRA bifunctional prot  84.3     1.3 3.8E-05   23.5   3.9   35  143-177     9-44  (64)
 72 >2d1h_A ST1889, 109AA long hyp  84.2     1.6 4.9E-05   22.9   4.4   50  133-191    17-66  (109)
 73 >1eto_A FIS, factor for invers  84.1     1.2 3.5E-05   23.8   3.6   43  135-178    10-52  (53)
 74 >1tlh_B Sigma-70, RNA polymera  84.1     1.8 5.3E-05   22.6   4.5   42  133-174    17-60  (81)
 75 >2d5v_A Hepatocyte nuclear fac  83.9     1.6 4.7E-05   23.0   4.2   42  133-174     2-44  (91)
 76 >3c3w_A Two component transcri  83.9     1.5 4.5E-05   23.1   4.1   37  135-174     2-38  (47)
 77 >3cuo_A Uncharacterized HTH-ty  83.7     1.4 4.1E-05   23.3   3.8   35  143-177    20-54  (90)
 78 >1gdt_A GD resolvase, protein   83.6     1.2 3.5E-05   23.8   3.5   31  143-174     9-39  (42)
 79 >3bd1_A CRO protein; transcrip  83.3     1.1 3.2E-05   24.1   3.1   48  144-192     4-54  (79)
 80 >1je8_A Nitrate/nitrite respon  82.7     3.3 9.8E-05   20.9   6.0   39  133-174    20-58  (82)
 81 >2pn6_A ST1022, 150AA long hyp  82.7     1.1 3.3E-05   23.9   3.0   30  145-174    10-39  (53)
 82 >1ojl_A Transcriptional regula  82.5     1.3   4E-05   23.4   3.4   39  135-174    12-50  (51)
 83 >1z05_A Transcriptional regula  82.4     1.8 5.4E-05   22.5   4.0   42  141-191    42-83  (132)
 84 >3clo_A Transcriptional regula  82.0     3.5  0.0001   20.7   6.0   27  147-174    10-36  (60)
 85 >2e1c_A Putative HTH-type tran  81.9     2.3 6.8E-05   21.9   4.4   40  134-174    24-63  (77)
 86 >2o8x_A Probable RNA polymeras  81.7     2.2 6.5E-05   22.1   4.2   39  134-174    15-53  (70)
 87 >3e7l_A Transcriptional regula  81.4     1.5 4.3E-05   23.2   3.2   43  136-179    17-59  (63)
 88 >3kcc_A Catabolite gene activa  81.0       2   6E-05   22.3   3.9   23  152-174    29-51  (72)
 89 >3b73_A PHIH1 repressor-like p  80.9     1.2 3.6E-05   23.7   2.7   40  135-176    11-53  (111)
 90 >2kko_A Possible transcription  80.8       2 5.8E-05   22.3   3.7   32  146-177    32-63  (82)
 91 >1j5y_A Transcriptional regula  80.8     2.7 7.9E-05   21.5   4.4   43  134-176    16-60  (79)
 92 >2zcw_A TTHA1359, transcriptio  80.6     2.1 6.2E-05   22.2   3.8   37  152-197    29-65  (85)
 93 >1l3l_A Transcriptional activa  80.6     2.3 6.7E-05   22.0   4.0   37  135-174     1-37  (61)
 94 >1mkm_A ICLR transcriptional r  80.5     2.6 7.6E-05   21.6   4.2   42  135-176     4-47  (64)
 95 >2oz6_A Virulence factor regul  80.1     2.3 6.9E-05   21.9   3.9   25  151-175    28-52  (72)
 96 >2p4w_A Transcriptional regula  80.0     2.1 6.3E-05   22.1   3.7   32  146-177    22-53  (77)
 97 >2cfx_A HTH-type transcription  79.9     1.6 4.7E-05   23.0   3.0   39  135-174     3-41  (55)
 98 >3i4p_A Transcriptional regula  79.9     1.8 5.4E-05   22.6   3.3   31  146-176    11-41  (53)
 99 >2dbb_A Putative HTH-type tran  79.8     1.5 4.3E-05   23.2   2.8   39  135-174     7-45  (58)
100 >2qfc_A PLCR protein; TPR, HTH  79.8    0.75 2.2E-05   25.0   1.3   42  136-178     2-43  (89)
101 >1dw9_A Cyanate lyase; cyanate  79.7     1.7 5.2E-05   22.7   3.1   39  148-186    15-54  (69)
102 >2jsc_A Transcriptional regula  79.5     1.8 5.2E-05   22.6   3.1   31  147-177    29-59  (118)
103 >2rnj_A Response regulator pro  79.4     4.3 0.00013   20.2   5.4   39  133-174    28-66  (91)
104 >2cyy_A Putative HTH-type tran  79.3     1.8 5.5E-05   22.5   3.2   40  134-174     4-43  (57)
105 >2ia2_A Putative transcription  79.3     2.6 7.8E-05   21.6   4.0   44  133-176    15-60  (86)
106 >2hoe_A N-acetylglucosamine ki  79.3     1.7   5E-05   22.8   3.0   32  145-176    26-57  (85)
107 >1wh8_A CUT-like 2, homeobox p  79.3     2.6 7.7E-05   21.6   3.9   43  133-175    25-68  (111)
108 >3fx3_A Cyclic nucleotide-bind  79.0       2   6E-05   22.3   3.3   24  151-174    26-49  (86)
109 >2p5v_A Transcriptional regula  78.8     1.8 5.4E-05   22.6   3.0   39  135-174     8-46  (60)
110 >1a04_A Nitrate/nitrite respon  78.7     3.2 9.5E-05   21.0   4.3   39  133-174    25-63  (87)
111 >3dkw_A DNR protein; CRP-FNR,   78.7     1.3   4E-05   23.4   2.3   22  153-174     1-22  (49)
112 >2vxz_A Pyrsv_GP04; viral prot  78.6     2.6 7.6E-05   21.6   3.7   31  147-177    19-49  (165)
113 >3klo_A Transcriptional regula  78.6     2.5 7.4E-05   21.7   3.7   38  134-174     5-42  (71)
114 >3iwz_A CAP-like, catabolite a  78.5     1.4   4E-05   23.4   2.3   24  151-174    28-51  (72)
115 >3g3z_A NMB1585, transcription  78.4     3.5  0.0001   20.8   4.4   35  140-174     4-38  (91)
116 >2a61_A Transcriptional regula  78.3     3.7 0.00011   20.6   4.5   35  140-174     7-41  (66)
117 >1on2_A Transcriptional regula  78.2     3.6 0.00011   20.6   4.4   42  135-176     2-46  (142)
118 >3e6c_C CPRK, cyclic nucleotid  78.1     2.7   8E-05   21.5   3.7   34  152-194    30-63  (103)
119 >3d0s_A Transcriptional regula  77.9     1.7 5.2E-05   22.7   2.7   36  151-195    29-64  (80)
120 >2nnn_A Probable transcription  77.8     3.5  0.0001   20.8   4.2   36  139-174     5-40  (65)
121 >1uly_A Hypothetical protein P  77.8       3 8.7E-05   21.2   3.8   33  144-177    17-49  (74)
122 >1pdn_C Protein (PRD paired);   77.6     3.1 9.3E-05   21.1   3.9   30  146-176    12-41  (53)
123 >2oqg_A Possible transcription  77.5     2.4 7.1E-05   21.8   3.3   33  144-177    27-59  (79)
124 >2nyx_A Probable transcription  77.5     3.9 0.00011   20.5   4.4   35  140-174     5-39  (64)
125 >1r1u_A CZRA, repressor protei  77.0     3.1 9.2E-05   21.1   3.8   33  144-177    32-64  (106)
126 >1wh6_A CUT-like 2, homeobox p  76.8     3.5  0.0001   20.8   4.0   42  133-174    15-57  (101)
127 >2p5k_A Arginine repressor; DN  76.7     4.2 0.00012   20.2   4.4   41  137-177     3-49  (64)
128 >1x2l_A CUT-like 2, homeobox p  76.6     3.5  0.0001   20.7   4.0   42  133-174    15-57  (101)
129 >3hot_A Transposable element m  76.4     2.6 7.6E-05   21.6   3.2   32  144-175    12-44  (52)
130 >1i1g_A Transcriptional regula  76.3     2.7 8.1E-05   21.4   3.3   29  146-174    12-40  (54)
131 >1p4w_A RCSB; solution structu  76.2     3.5  0.0001   20.8   3.9   38  134-174    34-71  (99)
132 >2auw_A Hypothetical protein N  76.2     2.6 7.6E-05   21.6   3.2   31  143-173     5-35  (81)
133 >3cjn_A Transcriptional regula  76.0     4.4 0.00013   20.1   4.3   43  140-191     7-49  (78)
134 >3f6v_A Possible transcription  75.7     2.5 7.3E-05   21.7   3.0   32  146-177    65-96  (131)
135 >2g7u_A Transcriptional regula  75.6     4.6 0.00013   20.0   4.3   45  132-176     7-53  (75)
136 >1b4a_A Arginine repressor; he  75.6     3.4   1E-04   20.9   3.6   39  139-177     5-49  (68)
137 >2hsg_A Glucose-resistance amy  75.5     2.6 7.6E-05   21.6   3.0   36  152-187     2-38  (46)
138 >2a6h_F RNA polymerase sigma f  75.4     2.6 7.6E-05   21.6   3.0   54  133-188    24-79  (88)
139 >2fmy_A COOA, carbon monoxide   75.4     2.2 6.6E-05   22.0   2.7   26  151-176    30-55  (84)
140 >1g2h_A Transcriptional regula  75.4     2.9 8.7E-05   21.3   3.3   41  135-177    18-58  (61)
141 >3d1n_I POU domain, class 6, t  75.3     3.7 0.00011   20.6   3.8   41  135-175     3-50  (94)
142 >3cta_A Riboflavin kinase; str  75.0       3 8.8E-05   21.2   3.2   40  134-174    10-49  (91)
143 >3bdd_A Regulatory protein MAR  74.9       5 0.00015   19.8   4.4   35  140-174     4-38  (73)
144 >3ere_D Arginine repressor; X-  74.8     3.6 0.00011   20.6   3.6   45  133-177    14-64  (87)
145 >1yio_A Response regulatory pr  74.5     3.8 0.00011   20.5   3.7   28  146-174     9-36  (65)
146 >3dv8_A Transcriptional regula  74.2     3.9 0.00012   20.4   3.7   38  151-197    22-59  (74)
147 >3hrs_A Metalloregulator SCAR;  74.2     2.6 7.5E-05   21.6   2.7   29  146-174    13-42  (138)
148 >2q1z_A RPOE, ECF SIGE; ECF si  74.1     0.7 2.1E-05   25.2  -0.1   40  133-174    32-71  (82)
149 >2fxa_A Protease production re  74.0     4.8 0.00014   19.9   4.1   35  140-174     6-40  (81)
150 >2zdb_A Transcriptional regula  74.0     1.8 5.3E-05   22.6   1.9   35  151-194    28-62  (85)
151 >1ft9_A Carbon monoxide oxidat  73.8     2.4 7.1E-05   21.8   2.5   33  151-192    30-62  (90)
152 >2jrh_A Mitogen-activated prot  73.3     6.2 0.00018   19.2   4.5   49  246-296    22-70  (94)
153 >3h5t_A Transcriptional regula  73.1     3.7 0.00011   20.6   3.3   36  152-187     9-45  (60)
154 >2o0y_A Transcriptional regula  73.0     4.5 0.00013   20.1   3.7   46  131-176    15-62  (95)
155 >1yse_A DNA-binding protein SA  72.6     3.2 9.6E-05   21.0   3.0   42  133-174    19-61  (141)
156 >2npt_B Mitogen-activated prot  72.6     6.5 0.00019   19.0   4.6   49  246-296    38-86  (100)
157 >2fbi_A Probable transcription  72.6     5.5 0.00016   19.5   4.1   36  139-174     3-38  (75)
158 >1ku9_A Hypothetical protein M  72.6     6.5 0.00019   19.0   5.5   47  127-174    16-63  (88)
159 >3f6o_A Probable transcription  72.0     2.4 7.1E-05   21.8   2.2   32  146-177    25-56  (118)
160 >2cu1_A Mitogen-activated prot  71.6     6.9  0.0002   18.9   4.5   49  246-296    26-74  (103)
161 >1fse_A GERE; helix-turn-helix  71.5     6.9  0.0002   18.9   6.4   39  133-174    10-48  (74)
162 >1qpz_A PURA, protein (purine   71.4     2.6 7.7E-05   21.6   2.2   34  154-187     2-36  (45)
163 >2c60_A Human mitogen-activate  71.4     5.7 0.00017   19.4   4.0   49  246-296    49-97  (111)
164 >3bj6_A Transcriptional regula  71.1     6.3 0.00019   19.1   4.2   45  130-175    33-77  (125)
165 >3e97_A Transcriptional regula  71.0     4.9 0.00014   19.8   3.6   37  152-197    56-92  (112)
166 >2p7v_B Sigma-70, RNA polymera  71.0     5.6 0.00017   19.4   3.9   41  133-173     4-46  (68)
167 >2gau_A Transcriptional regula  70.8       3   9E-05   21.1   2.5   36  151-195    28-63  (81)
168 >3c57_A Two component transcri  70.4     6.5 0.00019   19.0   4.1   39  133-174    26-64  (95)
169 >2jpc_A SSRB; DNA binding prot  70.4     3.9 0.00012   20.4   3.0   23  152-174    13-35  (61)
170 >1wiz_A DNA-binding protein SA  70.3     3.9 0.00012   20.4   3.0   44  133-176    15-59  (101)
171 >3iyd_F RNA polymerase sigma f  70.3     1.6 4.6E-05   23.0   0.9   42  133-174    46-89  (110)
172 >1x3u_A Transcriptional regula  70.2     5.4 0.00016   19.6   3.6   38  134-174    16-53  (79)
173 >1nr3_A MTH0916, DNA-binding p  70.2    0.53 1.6E-05   26.0  -1.5   21  150-170     3-23  (46)
174 >3frw_A Putative Trp repressor  69.9     6.9  0.0002   18.9   4.1   31  146-177    30-60  (84)
175 >2qq9_A Diphtheria toxin repre  69.8     5.2 0.00015   19.6   3.5   33  144-176    15-48  (146)
176 >1s3j_A YUSO protein; structur  69.7       7 0.00021   18.8   4.1   51  131-191    31-81  (122)
177 >1z6r_A MLC protein; transcrip  69.3     6.6  0.0002   19.0   3.9   38  137-174    15-52  (107)
178 >2h09_A Transcriptional regula  69.2     5.7 0.00017   19.4   3.6   42  133-174    32-76  (155)
179 >2cg4_A Regulatory protein ASN  69.2     2.3 6.9E-05   21.9   1.6   31  146-176    13-43  (55)
180 >1fx7_A Iron-dependent repress  69.1     5.3 0.00016   19.6   3.4   41  134-174     3-46  (141)
181 >1l0o_C Sigma factor; bergerat  69.0     1.1 3.4E-05   23.9   0.0   22  152-173   214-235 (243)
182 >2qww_A Transcriptional regula  68.8     7.6 0.00023   18.6   4.2   75  131-215    35-117 (131)
183 >1ub9_A Hypothetical protein P  68.8     6.4 0.00019   19.1   3.8   33  143-175    21-53  (100)
184 >2qlz_A Transcription factor P  68.6     1.1 3.2E-05   24.0  -0.2   32  146-177    19-50  (76)
185 >2fbh_A Transcriptional regula  68.5     7.7 0.00023   18.6   4.1   33  142-174     7-40  (67)
186 >3dbi_A Sugar-binding transcri  68.1     1.2 3.6E-05   23.7   0.0   22  153-174     4-25  (185)
187 >1jgs_A Multiple antibiotic re  68.1     7.9 0.00023   18.5   4.1   50  133-192    30-79  (122)
188 >1lj9_A Transcriptional regula  68.0     7.4 0.00022   18.6   4.0   35  140-174     4-38  (87)
189 >3f3x_A Transcriptional regula  67.9     7.5 0.00022   18.6   4.0   40  133-174    33-72  (122)
190 >2hr3_A Probable transcription  67.8     7.6 0.00023   18.6   4.0   47  135-191     4-51  (94)
191 >3h5o_A Transcriptional regula  67.6     1.3 3.8E-05   23.6   0.0   35  152-186     4-39  (207)
192 >3ech_A MEXR, multidrug resist  67.5     7.1 0.00021   18.8   3.8   50  133-192    33-82  (122)
193 >2eth_A Transcriptional regula  67.3     8.2 0.00024   18.4   4.1   50  132-191    39-88  (130)
194 >2csf_A DNA-binding protein SA  67.3     6.2 0.00018   19.1   3.5   48  133-180    15-63  (101)
195 >1l9z_H Sigma factor SIGA; hel  67.0       6 0.00018   19.2   3.4   22  152-173    20-41  (63)
196 >2pij_A Prophage PFL 6 CRO; tr  67.0     5.2 0.00016   19.6   3.0   30  145-175     7-36  (67)
197 >1z91_A Organic hydroperoxide   66.7     6.9  0.0002   18.9   3.6   40  134-174     4-43  (78)
198 >3eco_A MEPR; mutlidrug efflux  66.3     8.8 0.00026   18.2   5.9   55  128-191    22-77  (119)
199 >3cdh_A Transcriptional regula  66.0       8 0.00024   18.4   3.8   44  130-174     6-49  (103)
200 >1jhf_A LEXA repressor; LEXA S  66.0     8.2 0.00024   18.4   3.9   33  144-176    15-50  (72)
201 >2bv6_A MGRA, HTH-type transcr  65.4     6.7  0.0002   18.9   3.3   36  139-174     6-41  (76)
202 >2gxg_A 146AA long hypothetica  65.3     9.2 0.00027   18.1   5.2   44  129-174    29-72  (121)
203 >1rzs_A Antirepressor, regulat  65.2     4.3 0.00013   20.2   2.3   27  146-173     5-31  (61)
204 >3deu_A Transcriptional regula  64.8     9.4 0.00028   18.0   5.6   76  129-214    45-127 (139)
205 >3f8m_A GNTR-family protein tr  64.5     8.3 0.00024   18.4   3.7   24  154-177    38-61  (77)
206 >1zs4_A Regulatory protein CII  64.3     7.5 0.00022   18.6   3.4   30  141-173    16-45  (62)
207 >2bgc_A PRFA; bacterial infect  64.1     4.9 0.00014   19.8   2.4   34  152-194    63-97  (132)
208 >1y0u_A Arsenical resistance o  64.0     8.8 0.00026   18.2   3.7   26  152-177    43-68  (96)
209 >3c7j_A Transcriptional regula  63.9     9.8 0.00029   17.9   3.9   26  152-177    49-74  (91)
210 >2v79_A DNA replication protei  63.9     7.7 0.00023   18.5   3.4   57  127-192     7-67  (120)
211 >3edp_A LIN2111 protein; APC88  63.8     9.8 0.00029   17.9   4.0   24  154-177    35-58  (76)
212 >3eet_A Putative GNTR-family t  63.6     7.1 0.00021   18.8   3.2   24  154-177    55-78  (96)
213 >1u8b_A ADA polyprotein; prote  62.7     7.8 0.00023   18.5   3.3   28  147-174    20-47  (65)
214 >1stz_A Heat-inducible transcr  62.0      11 0.00031   17.7   3.9   52  135-195    15-72  (105)
215 >3g7q_A Valine-pyruvate aminot  62.0     8.4 0.00025   18.3   3.3   30   47-76     37-67  (133)
216 >3jw4_A Transcriptional regula  61.9     8.8 0.00026   18.2   3.4   45  130-174     8-53  (101)
217 >3iwf_A Transcription regulato  61.5      11 0.00032   17.6   4.6   47  131-177    11-60  (74)
218 >2frh_A SARA, staphylococcal a  61.4      11 0.00032   17.6   3.9   42  132-174    32-75  (127)
219 >3fm5_A Transcriptional regula  61.3      11 0.00032   17.6   5.8   44  130-174    32-76  (124)
220 >3hsr_A HTH-type transcription  60.7      11 0.00032   17.6   3.7   52  130-191    29-80  (119)
221 >1hsj_A Fusion protein consist  60.5     7.8 0.00023   18.5   2.9   26  149-174    17-42  (87)
222 >2o3f_A Putative HTH-type tran  60.3      11 0.00033   17.5   4.6   66  124-189     6-78  (111)
223 >2hs5_A Putative transcription  59.8      12 0.00034   17.4   4.2   25  153-177    52-76  (94)
224 >2o4a_A DNA-binding protein SA  59.8     7.9 0.00023   18.5   2.9   68  135-205     7-75  (93)
225 >1xwr_A Regulatory protein CII  59.8     7.1 0.00021   18.8   2.6   30  141-173    15-44  (62)
226 >2pex_A Transcriptional regula  59.5      12 0.00035   17.4   4.2   35  140-174     6-40  (71)
227 >1e3o_C Octamer-binding transc  59.5      12 0.00035   17.4   3.7   35  141-175    13-53  (91)
228 >3bpv_A Transcriptional regula  59.2      12 0.00035   17.4   4.3   54  128-191    20-73  (114)
229 >3jvd_A Transcriptional regula  59.2     2.3 6.7E-05   22.0   0.0   23  152-174     6-28  (205)
230 >2k27_A Paired box protein PAX  59.0     9.9 0.00029   17.9   3.2   29  146-175    36-64  (75)
231 >2k9s_A Arabinose operon regul  58.6      12 0.00036   17.3   3.8   37  138-174     5-42  (46)
232 >2wv0_A YVOA, HTH-type transcr  58.5      12 0.00036   17.3   3.9   24  154-177    36-59  (82)
233 >2fa5_A Transcriptional regula  58.5      12 0.00036   17.3   4.3   40  134-174    46-85  (134)
234 >2di3_A Bacterial regulatory p  58.4      12 0.00036   17.3   4.2   24  154-177    30-53  (78)
235 >2a6h_F RNA polymerase sigma f  58.2      10  0.0003   17.8   3.2   37  143-179    16-56  (56)
236 >2jn6_A Protein CGL2762, trans  58.0      12 0.00037   17.2   4.6   43  135-177     6-48  (56)
237 >3bro_A Transcriptional regula  57.6     8.3 0.00025   18.3   2.7   22  153-174     2-23  (51)
238 >2e18_A NH(3)-dependent NAD(+)  57.6      12 0.00036   17.2   3.5   86   88-177    20-107 (128)
239 >2rdp_A Putative transcription  57.2      13 0.00038   17.1   5.7   44  130-174    35-78  (127)
240 >3ctp_A Periplasmic binding pr  56.6     2.7 7.9E-05   21.5   0.0   33  154-186     4-37  (200)
241 >3bja_A Transcriptional regula  56.4     9.9 0.00029   17.8   2.9   43  131-174    27-69  (118)
242 >1jye_A Lactose operon repress  55.5     2.8 8.4E-05   21.3   0.0   36  153-188     4-40  (219)
243 >3bru_A Regulatory protein, TE  55.5      14  0.0004   17.0   3.8   30  145-174    40-72  (72)
244 >1z4h_A TORI, TOR inhibition p  55.3     3.7 0.00011   20.6   0.6   29  152-180    10-38  (66)
245 >3k0l_A Repressor protein; hel  55.0      14 0.00041   16.9   4.1   44  130-174    39-82  (131)
246 >3bil_A Probable LACI-family t  54.8       3 8.8E-05   21.2   0.0   11   64-74     86-96  (348)
247 >2jj7_A Hemolysin II regulator  54.3      12 0.00035   17.4   3.0   31  144-174    16-49  (70)
248 >3e6m_A MARR family transcript  54.0      14 0.00043   16.8   4.1   41  133-174    49-89  (138)
249 >3boq_A Transcriptional regula  53.9     8.5 0.00025   18.3   2.2   71  134-214    44-121 (133)
250 >3if2_A Aminotransferase; YP_2  53.8      14 0.00041   16.9   3.3   31   46-76     64-95  (161)
251 >3hyi_A Protein DUF199/WHIA; l  53.7      15 0.00043   16.8   4.1   54  120-174    24-78  (91)
252 >2elh_A CG11849-PA, LD40883P;   53.2      15 0.00044   16.7   4.3   45  131-177    19-63  (87)
253 >2o20_A Catabolite control pro  53.0     3.3 9.8E-05   20.9   0.0   36  152-187     5-41  (202)
254 >3dbw_A Transcriptional regula  52.9      11 0.00031   17.7   2.6   21   45-65     31-51  (226)
255 >1jhg_A Trp operon repressor;   52.8      15 0.00044   16.7   4.9   33  146-178    16-48  (65)
256 >3e3m_A Transcriptional regula  52.3     3.4  0.0001   20.8   0.0   16  155-170    15-30  (221)
257 >3bwg_A Uncharacterized HTH-ty  51.0      10 0.00031   17.7   2.3   24  154-177    31-54  (82)
258 >2ek5_A Predicted transcriptio  50.2      11 0.00033   17.5   2.3   34  154-196    30-63  (101)
259 >3by6_A Predicted transcriptio  49.7      13 0.00037   17.2   2.5   33  154-195    37-69  (106)
260 >1hw1_A FADR, fatty acid metab  48.7      13 0.00038   17.1   2.4   23  154-176    33-55  (77)
261 >1aoy_A Arginine repressor; DN  48.2      18 0.00052   16.2   3.5   38  141-178    11-55  (78)
262 >2zb9_A Putative transcription  48.1      18 0.00052   16.2   3.1   32  143-174    31-65  (85)
263 >2cob_A LCOR protein; MLR2, KI  47.0      18 0.00055   16.1   4.3   40  134-174    13-52  (70)
264 >3fzv_A Probable transcription  46.9      18 0.00052   16.2   2.9   36  140-177     8-43  (88)
265 >2r2n_A Kynurenine/alpha-amino  46.8      19 0.00055   16.1   3.6   30   47-76     95-125 (192)
266 >1t33_A Putative transcription  46.2      19 0.00056   16.0   3.2   30  144-173    21-52  (224)
267 >3i53_A O-methyltransferase; C  45.9      19 0.00057   16.0   3.2   35  143-178    30-64  (90)
268 >3dew_A Transcriptional regula  45.8      19 0.00057   16.0   3.1   30  145-174    18-50  (72)
269 >2qwt_A Transcriptional regula  45.4      19 0.00057   16.0   3.0   30  144-173    22-53  (196)
270 >2g7s_A Transcriptional regula  44.9      20 0.00058   16.0   2.9   31  143-173    16-49  (50)
271 >1v4r_A Transcriptional repres  44.8       8 0.00024   18.4   0.9   24  154-177    37-60  (102)
272 >2fd5_A Transcriptional regula  44.6      16 0.00046   16.6   2.4   32  143-174    15-49  (75)
273 >2ip2_A Probable phenazine-spe  44.0      20 0.00061   15.8   3.0   29  149-177    38-66  (89)
274 >2yve_A Transcriptional regula  44.0      21 0.00061   15.8   3.0   32  143-174    12-46  (185)
275 >3lmm_A Uncharacterized protei  43.9     5.6 0.00016   19.5   0.0   36  139-174   107-143 (174)
276 >3bni_A Putative TETR-family t  43.8      21 0.00061   15.8   3.0   29  145-173    53-84  (85)
277 >3bqy_A Putative TETR family t  43.7      21 0.00061   15.8   3.1   21  153-173    23-43  (209)
278 >2kfs_A Conserved hypothetical  43.6      15 0.00046   16.6   2.2   24  152-175    31-54  (75)
279 >1ixc_A CBNR, LYSR-type regula  43.6      21 0.00062   15.8   3.9   37  138-176     3-39  (88)
280 >1rkt_A Protein YFIR; transcri  43.5      20 0.00058   15.9   2.8   30  145-174    22-54  (82)
281 >3ihu_A Transcriptional regula  43.5      21 0.00062   15.8   4.2   26  152-177    39-64  (82)
282 >1au7_A Protein PIT-1, GHF-1;   43.2      21 0.00063   15.7   3.5   34  141-174     9-48  (82)
283 >1sfx_A Conserved hypothetical  42.8      21 0.00063   15.7   4.0   33  141-173     5-37  (64)
284 >2hyj_A Putative TETR-family t  42.6      21 0.00063   15.7   2.8   30  144-173    21-53  (200)
285 >2ao9_A Phage protein; structu  42.5      22 0.00064   15.7   5.0   40  152-191    48-87  (90)
286 >3fxq_A LYSR type regulator of  42.5      22 0.00064   15.7   3.8   37  138-176     4-40  (91)
287 >2q7w_A Aspartate aminotransfe  42.4      22 0.00064   15.7   3.3   29   48-76    113-142 (220)
288 >2iu5_A DHAS, hypothetical pro  42.3      20 0.00059   15.9   2.6   27  101-128    40-66  (195)
289 >1p4x_A Staphylococcal accesso  42.1      22 0.00065   15.6   3.8   24  151-174    18-41  (95)
290 >3bqz_B HTH-type transcription  41.8      22 0.00065   15.6   2.8   30  145-174    12-44  (71)
291 >2q24_A Putative TETR family t  41.7      22 0.00065   15.6   2.8   31  144-174    24-56  (194)
292 >1zk8_A Transcriptional regula  41.0      23 0.00067   15.5   3.4   31  143-173    16-49  (183)
293 >2csb_A Topoisomerase V, TOP61  41.0      23 0.00067   15.5   8.1   83  146-232    10-105 (142)
294 >2nx4_A Transcriptional regula  41.0      23 0.00068   15.5   3.0   31  144-174    19-52  (194)
295 >3g7r_A Putative transcription  40.8      23 0.00068   15.5   3.0   30  144-173    44-76  (221)
296 >2eh3_A Transcriptional regula  40.5      23 0.00069   15.5   3.0   31  144-174    11-44  (179)
297 >2vz4_A Tipal, HTH-type transc  40.3      13  0.0004   17.0   1.5   69  153-228     2-70  (74)
298 >2w53_A Repressor, SMet; antib  40.2      23 0.00069   15.4   2.8   21  153-173    32-52  (219)
299 >2dg8_A Putative TETR-family t  40.0      24  0.0007   15.4   2.9   29  145-173    19-50  (193)
300 >3e7q_A Transcriptional regula  39.9      24  0.0007   15.4   2.7   22  152-173    34-55  (215)
301 >2k9m_A RNA polymerase sigma f  39.7      24 0.00071   15.4   3.1   45  133-177    15-64  (72)
302 >3iuv_A Uncharacterized TETR f  39.6      24 0.00071   15.4   3.3   30  144-173    19-51  (201)
303 >2rek_A Putative TETR-family t  39.6      24 0.00071   15.4   3.6   30  145-174    26-57  (82)
304 >1d5y_A ROB transcription fact  39.4      20  0.0006   15.9   2.3   23  152-174    19-41  (104)
305 >1vi0_A Transcriptional regula  39.2      24 0.00072   15.3   3.1   30  144-173    17-49  (206)
306 >2g3b_A Putative TETR-family t  38.5      25 0.00074   15.3   2.7   20  154-173    25-44  (208)
307 >1tc3_C Protein (TC3 transposa  38.4      23 0.00067   15.5   2.4   38  135-174     6-43  (51)
308 >3lhq_A Acrab operon repressor  38.0      25 0.00075   15.2   3.0   29  145-173    24-55  (220)
309 >3k69_A Putative transcription  37.7      26 0.00076   15.2   3.6   24  152-175    28-51  (136)
310 >2hku_A A putative transcripti  37.6      26 0.00076   15.2   3.0   29  145-173    30-60  (215)
311 >1tw3_A COMT, carminomycin 4-O  37.6      26 0.00076   15.2   3.1   33  144-177    16-48  (80)
312 >1neq_A DNA-binding protein NE  37.2      26 0.00077   15.1   2.6   39  132-174     6-44  (74)
313 >3jsj_A Putative TETR-family t  37.1      26 0.00077   15.1   3.0   29  146-174    20-50  (190)
314 >3gbg_A TCP pilus virulence re  37.0      26 0.00078   15.1   7.4   53  136-190   169-221 (276)
315 >2gen_A Probable transcription  37.0      26 0.00078   15.1   2.8   30  144-173    16-48  (197)
316 >2iai_A Putative transcription  36.9      25 0.00074   15.3   2.4   28  146-173    11-41  (200)
317 >2fbq_A Probable transcription  36.8      26 0.00078   15.1   3.0   19  154-172    29-47  (235)
318 >3egq_A TETR family transcript  36.8      27 0.00078   15.1   3.8   32  143-174    12-46  (69)
319 >3cwr_A Transcriptional regula  36.7      27 0.00079   15.1   3.1   21  153-173    38-58  (208)
320 >1y6u_A XIS, excisionase from   36.6      16 0.00048   16.5   1.4   32  149-180    13-44  (70)
321 >3cjd_A Transcriptional regula  36.5      27 0.00079   15.1   3.1   30  144-173    21-53  (198)
322 >2oi8_A Putative regulatory pr  36.5      26 0.00078   15.1   2.5   27  146-172    27-56  (58)
323 >2d6y_A Putative TETR family r  36.4      27 0.00079   15.1   3.8   30  145-174    18-50  (74)
324 >3he0_A Transcriptional regula  36.4      27 0.00079   15.1   2.8   28  146-173    22-52  (196)
325 >1qzz_A RDMB, aclacinomycin-10  36.4      27  0.0008   15.1   3.0   30  148-177    20-49  (83)
326 >2qtq_A Transcriptional regula  36.3      27  0.0008   15.1   3.6   31  144-174    25-58  (81)
327 >2g7g_A RHA04620, putative tra  36.3      27  0.0008   15.1   2.5   22  152-173    29-50  (213)
328 >2uxu_A HTH-type transcription  36.2      27  0.0008   15.0   3.0   31  144-174    20-53  (210)
329 >2vn2_A DNAD, chromosome repli  36.2      27  0.0008   15.0   3.8   50  125-174     6-59  (65)
330 >3col_A Putative transcription  36.1      27  0.0008   15.0   2.8   28  146-173    21-51  (196)
331 >1j1v_A Chromosomal replicatio  36.0      27  0.0008   15.0   5.1   37  138-174    30-69  (94)
332 >3gzi_A Transcriptional regula  35.8      27 0.00081   15.0   3.0   30  145-174    27-59  (218)
333 >1rr7_A Middle operon regulato  35.7      27 0.00081   15.0   4.1   29  146-174    16-45  (60)
334 >3c2b_A Transcriptional regula  35.5      28 0.00082   15.0   3.1   20  154-173    37-56  (221)
335 >1pb6_A Hypothetical transcrip  35.5      28 0.00082   15.0   2.8   21  153-173    39-59  (212)
336 >2of7_A Putative TETR-family t  35.4      28 0.00082   15.0   3.0   30  145-174    58-90  (95)
337 >2guh_A Putative TETR-family t  35.2      28 0.00083   14.9   3.2   30  144-173    48-80  (214)
338 >3ic7_A Putative transcription  34.9     5.2 0.00015   19.6  -1.3   24  154-177     8-31  (49)
339 >2gfn_A HTH-type transcription  34.9      28 0.00084   14.9   3.0   28  146-173    20-50  (209)
340 >2pbx_A Hemagglutinin/protease  34.9      28 0.00084   14.9   3.0   28  146-173    28-58  (203)
341 >1q06_A Transcriptional regula  34.8      25 0.00074   15.2   2.2   70  153-229     1-70  (74)
342 >1ui5_A A-factor receptor homo  34.8      28 0.00084   14.9   3.0   29  145-173    19-50  (215)
343 >2r0q_C Putative transposon TN  34.8      29 0.00084   14.9   3.1   33  146-179    20-52  (59)
344 >3eup_A Transcriptional regula  34.7      24 0.00072   15.3   2.1   30  144-173    20-52  (204)
345 >1fo8_A Alpha-1,3-mannosyl-gly  34.7      29 0.00085   14.9   3.4   25  271-295    47-71  (113)
346 >1zyb_A Transcription regulato  34.2      29 0.00086   14.8   2.6   23  152-174   145-167 (191)
347 >2id3_A Putative transcription  34.1      29 0.00086   14.8   3.1   22  152-173    60-81  (225)
348 >3cdl_A Transcriptional regula  34.1      29 0.00086   14.8   2.5   29  145-173    19-50  (51)
349 >2zcx_A SCO7815, TETR-family t  33.9      29 0.00087   14.8   3.0   19  154-172    45-63  (231)
350 >3hh0_A Transcriptional regula  33.8      23 0.00069   15.5   1.9   69  152-227     4-72  (74)
351 >2hxo_A Putative TETR-family t  33.8      30 0.00087   14.8   2.6   11   64-74     23-33  (237)
352 >2ibd_A Possible transcription  33.8      30 0.00087   14.8   2.8   28  146-173    25-55  (204)
353 >3frq_A Repressor protein MPHR  33.6      30 0.00088   14.8   3.6   32  143-174    16-50  (195)
354 >1sgm_A Putative HTH-type tran  33.4      30 0.00089   14.8   2.5   21  153-173    27-47  (191)
355 >2qib_A TETR-family transcript  33.3      30 0.00089   14.7   3.2   20  154-173    35-54  (213)
356 >2g7l_A TETR-family transcript  33.3      28 0.00083   14.9   2.2   23   53-75     14-37  (243)
357 >2w7n_A TRFB transcriptional r  33.3      30 0.00089   14.7   3.5   35  139-173    21-55  (73)
358 >1l8q_A Chromosomal replicatio  33.1      30  0.0009   14.7   2.4   26  149-174    56-82  (110)
359 >1j9i_A GPNU1 DBD;, terminase   33.0      22 0.00066   15.6   1.7   26  153-179     3-28  (68)
360 >3c0w_A Intron-encoded endonuc  32.8      31 0.00091   14.7   4.3   35  245-279    23-57  (59)
361 >3g1l_A Transcriptional regula  32.5      31 0.00092   14.7   3.3   16  155-170    67-82  (256)
362 >3geu_A Intercellular adhesion  32.1      26 0.00077   15.2   1.9   29  146-174    14-45  (189)
363 >2zcm_A Biofilm operon icaabcd  32.0      32 0.00093   14.6   3.6   31  144-174    16-49  (192)
364 >1qgu_B Protein (nitrogenase m  32.0      32 0.00093   14.6   3.7   51   57-108    18-75  (83)
365 >3ei9_A LL-diaminopimelate ami  31.9      32 0.00094   14.6   3.1   31   46-76    110-141 (218)
366 >3ljl_A Transcriptional regula  31.7      32 0.00094   14.6   3.5   28  146-173    25-55  (60)
367 >1sfu_A 34L protein; protein/Z  31.7      32 0.00095   14.6   2.4   23  151-173    28-50  (75)
368 >1t56_A EThr repressor; helix-  31.7      32 0.00095   14.6   3.2   21  153-173    45-65  (216)
369 >3bhq_A Transcriptional regula  31.5      32 0.00095   14.6   3.0   30  144-173    21-53  (211)
370 >3bjb_A Probable transcription  31.5      32 0.00095   14.6   3.2   22  152-173    42-63  (207)
371 >3crj_A Transcription regulato  31.5      32 0.00095   14.6   2.7   29  145-173    24-55  (199)
372 >3f0c_A TETR-molecule A, trans  31.4      32 0.00095   14.5   3.0   18  154-171    33-50  (216)
373 >2v57_A TETR family transcript  31.3      32 0.00096   14.5   2.9   31  144-174    23-54  (190)
374 >1m7y_A ACC synthase, 1-aminoc  31.2      33 0.00096   14.5   3.1   30   47-76     88-118 (195)
375 >2fq4_A Transcriptional regula  31.1      33 0.00097   14.5   3.0   29  146-174    23-54  (73)
376 >1u78_A TC3 transposase, trans  30.9      33 0.00097   14.5   3.7   32  143-174    15-48  (88)
377 >2pz9_A Putative regulatory pr  30.6      33 0.00098   14.5   3.3   21  153-173    51-71  (226)
378 >3knw_A Putative transcription  30.6      33 0.00098   14.5   3.0   19  154-172    36-54  (212)
379 >2din_A Cell division cycle 5-  30.5      33 0.00099   14.4   3.5   48  126-174     3-50  (66)
380 >3hhg_A Transcriptional regula  30.3      34   0.001   14.4   4.3   34  142-177     9-42  (88)
381 >3b81_A Transcriptional regula  30.2      34   0.001   14.4   2.7   31  144-174    20-53  (80)
382 >1wst_A MSAT, multiple substra  30.0      34   0.001   14.4   3.6   31   46-76     85-116 (182)
383 >2pjp_A Selenocysteine-specifi  29.6      35   0.001   14.4   4.3   41  135-176     1-44  (61)
384 >2z4s_A Chromosomal replicatio  29.6      13 0.00039   17.1   0.0   26  149-174   122-147 (178)
385 >2opt_A Actii protein; helical  29.6      35   0.001   14.3   4.0   32  143-174    14-48  (67)
386 >3jtx_A Aminotransferase; NP_2  29.2      35   0.001   14.3   3.1   30   47-76     85-115 (189)
387 >2ahq_A Sigma-54, RNA polymera  29.1      35   0.001   14.3   4.6   50  134-183    15-73  (76)
388 >1b9m_A Protein (mode); DNA-bi  29.0      36  0.0011   14.3   4.3   37  138-176    22-58  (112)
389 >3fdb_A Beta C-S lyase, putati  28.8      36  0.0011   14.3   3.0   50   47-101    77-127 (175)
390 >3kkd_A Transcriptional regula  28.3      28 0.00084   14.9   1.6   32  100-132    61-92  (237)
391 >1in0_A YAJQ protein, HI1034;   28.1      37  0.0011   14.2   7.1   38  261-300    26-63  (72)
392 >1bw0_A TAT, protein (tyrosine  27.9      37  0.0011   14.2   3.2   30   47-76    136-166 (258)
393 >3dpj_A Transcription regulato  27.6      38  0.0011   14.1   3.0   31  144-174    17-50  (79)
394 >2ras_A Transcriptional regula  27.4      38  0.0011   14.1   3.3   28  146-173    22-52  (66)
395 >1u69_A Hypothetical protein;   27.3      38  0.0011   14.1   3.0   24  274-297     5-28  (49)
396 >1yaa_A Aspartate aminotransfe  27.1      38  0.0011   14.1   3.5   30   47-76     90-120 (207)
397 >2np5_A Transcriptional regula  27.0      38  0.0011   14.1   3.8   20  154-173    31-50  (203)
398 >2ovg_A Phage lambda CRO; tran  27.0      38  0.0011   14.1   2.9   26  147-174    10-35  (66)
399 >2fbk_A Transcriptional regula  26.4      22 0.00066   15.6   0.7   74  132-215    64-146 (157)
400 >2vpr_A Tetracycline resistanc  26.4      39  0.0012   14.0   2.1   30  145-174    14-46  (68)
401 >3dzz_A Putative pyridoxal 5'-  26.3      40  0.0012   14.0   3.0   30   47-76     83-113 (186)
402 >3fry_A Probable copper-export  26.0      40  0.0012   13.9   4.5   46  249-296    19-64  (73)
403 >2hxi_A Putative transcription  25.1      42  0.0012   13.8   3.8   20  154-173    51-70  (241)
404 >3isp_A HTH-type transcription  24.8      42  0.0012   13.8   2.6   34  141-176    11-44  (89)
405 >3cjl_A Domain of unknown func  24.7      42  0.0012   13.8   2.7   21  274-294    18-38  (70)
406 >1al3_A Cys regulon transcript  24.4      18 0.00054   16.1   0.0   31  146-177    11-41  (227)
407 >2heo_A Z-DNA binding protein   24.2      43  0.0013   13.7   3.9   32  143-174    15-47  (67)
408 >2qco_A CMER; transcriptional   24.2      28 0.00084   14.9   0.9   20  154-173    35-54  (210)
409 >2b0l_A GTP-sensing transcript  24.1      43  0.0013   13.7   4.1   36  142-177    28-68  (102)
410 >3him_A Probable transcription  23.8      29 0.00085   14.9   0.9   26  101-127    43-68  (211)
411 >3euc_A Histidinol-phosphate a  23.6      44  0.0013   13.7   2.6   29   47-75    121-150 (231)
412 >1iay_A ACC synthase 2, 1-amin  23.6      44  0.0013   13.7   3.3   27   49-75     90-117 (193)
413 >1ylf_A RRF2 family protein; s  23.3      45  0.0013   13.6   4.1   25  152-176    30-54  (149)
414 >1lc5_A COBD, L-threonine-O-3-  23.0      45  0.0013   13.6   3.1   30   47-76    116-146 (225)
415 >2r3s_A Uncharacterized protei  22.8      46  0.0014   13.6   2.9   33  144-177    16-48  (79)
416 >2juj_A E3 ubiquitin-protein l  22.4      41  0.0012   13.9   1.5   25  144-169    11-35  (56)
417 >2oo9_A E3 ubiquitin-protein l  21.7      48  0.0014   13.4   1.9   26  144-170     8-33  (46)
418 >2esn_A Probable transcription  21.4      49  0.0015   13.4   3.6   33  142-176    16-48  (94)
419 >2gb3_A Aspartate aminotransfe  21.3      49  0.0015   13.4   3.3   28   48-75    126-154 (236)
420 >3f8t_A Predicted ATPase invol  21.1      17  0.0005   16.4  -0.7   10  218-227   340-349 (398)
421 >2dou_A Probable N-succinyldia  20.9      50  0.0015   13.3   3.5   30   47-76     79-109 (178)
422 >2o7t_A Transcriptional regula  20.6      51  0.0015   13.3   3.9   28  146-173    19-49  (50)
423 >1yiz_A Kynurenine aminotransf  20.3      52  0.0015   13.2   3.1   30   47-76     89-119 (189)
424 >3gr5_A ESCC; secretin, type I  20.2      51  0.0015   13.3   1.6   46  246-292    21-69  (87)
425 >1x60_A Sporulation-specific N  20.0      52  0.0015   13.2   6.1   50  249-299    22-72  (79)

No 1  
>>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} (A:)
Probab=99.88  E-value=4.3e-23  Score=167.97  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=95.1

Q ss_pred             HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC-
Q ss_conf             2221255868733776543342100001345660240389823578999876898899999998863100155046205-
Q gi|254780805|r    6 SKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI-   84 (300)
Q Consensus         6 ~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~-   84 (300)
                      +.+++|+||++++++....          ....+..||+++|.|+  |||. |+++.+++|++||+++|+++|++|++. 
T Consensus         2 ~~~~~g~~l~~~~~~~~~~----------~~~~~~~ipl~~i~~~--~~r~-~~~~~~~~L~~sI~~~G~~~p~iv~~~~   68 (121)
T 1yzs_A            2 APEGPGPSGGAQGGSIHSG----------RIAAVHNVPLSVLIRP--LPSV-LDPAKVQSLVDTIREDPDSVPPIDVLWI   68 (121)
T ss_dssp             CCCCSSSCSSSCSSCCCSS----------CCCCEEEEEGGGEECC--CCCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCC----------CCCCEEECCHHHCCCC--CCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             8999897667789886568----------7672267689995689--9997-8989999999999975410684225501


Q ss_pred             ----CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH--HHHHHHHHHH
Q ss_conf             ----6544533357567777764210013543334641123--4556665431
Q gi|254780805|r   85 ----DNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSS--LEIAIVENVQ  131 (300)
Q Consensus        85 ----~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~--~~~~l~EN~~  131 (300)
                          ++|.|+|++|||||+|++.+|+++|||+|.+++++++  +.++++||+|
T Consensus        69 ~~~~~~~~y~ii~G~~R~~Aa~~lg~~~Ip~~v~d~~~~~~~~~~~~~~eN~q  121 (121)
T 1yzs_A           69 KGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ  121 (121)
T ss_dssp             ECTTSCEEEECCSCHHHHHHHHHTTCSEEEEEEEECCHHHHHHHHTTTCCCCC
T ss_pred             CCCCCCCEEEEEECHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCC
T ss_conf             23678970899636899999998398833689997999999999752372349


No 2  
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:1-99)
Probab=99.84  E-value=3.9e-22  Score=161.80  Aligned_cols=97  Identities=42%  Similarity=0.749  Sum_probs=86.4

Q ss_pred             CHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC
Q ss_conf             02221255868733776543342100001345660240389823578999876898899999998863100155046205
Q gi|254780805|r    5 YSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI   84 (300)
Q Consensus         5 ~~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~   84 (300)
                      -+++++|++++++++.              ....+..||++.|.|+|+|||+.++++.+++|++||+++|+++||+|++.
T Consensus         3 ~k~~~~~~~~~a~~~~--------------~~~~~~~i~i~~i~~~~~n~r~~~~~~~~~~L~~sI~~~G~~~Pi~V~~~   68 (99)
T 1vz0_A            3 RKPSGLGRGLEALLPK--------------TGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQ   68 (99)
T ss_dssp             ----------------------------------CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred             CCCCCCCCCHHHHCCC--------------CCCCEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             7867677687884788--------------77874883299976798999877798899999999986234354168745


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             65445333575677777642100135433346
Q gi|254780805|r   85 DNGLYKIIAGERRFRAAKMASLSEVPVIIRNV  116 (300)
Q Consensus        85 ~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~  116 (300)
                      + |+|+|++|||||+||+.+|+++|||+|.|+
T Consensus        69 ~-g~y~ii~G~~R~~aa~~lg~~~Ip~~v~d~   99 (99)
T 1vz0_A           69 G-DGYELVAGERRYRAALMAGLQEVPAVVKDL   99 (99)
T ss_dssp             T-TEEEEEECHHHHHHHHHHTCSEEEEEECCC
T ss_pred             C-CEEEEEECHHHHHHHHHCCCCEEEEEEEEC
T ss_conf             9-858998478888999986997323699728


No 3  
>>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} (A:1-93,A:228-242)
Probab=99.80  E-value=1.1e-20  Score=152.53  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=78.8

Q ss_pred             CCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC--CCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             1345660240389823578999876898899999998863100155046205--65445333575677777642100135
Q gi|254780805|r   33 ETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFRAAKMASLSEVP  110 (300)
Q Consensus        33 ~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~--~~g~y~ii~G~rR~rAa~~~g~~~ip  110 (300)
                      ......+..||++.|.++|+|||+.|+++.+++|+.||+++|+++|++|++.  ++|+|+|++|||||+||+.+|+++||
T Consensus         7 ~~~~~~i~~ipi~~I~~~~~~pR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~~~~g~y~Ii~G~~R~~Aa~~lg~~~Ip   86 (108)
T 1vk1_A            7 PKYDIPVKKVEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAP   86 (108)
T ss_dssp             ----CCEECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEE
T ss_pred             CCCCCCEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCC
T ss_conf             78899804615236602668996558999999999999981986684898336889757985055599999987997657


Q ss_pred             CCCCCCCCH
Q ss_conf             433346411
Q gi|254780805|r  111 VIIRNVDNK  119 (300)
Q Consensus       111 ~iv~~~~d~  119 (300)
                      |+|+++++-
T Consensus        87 v~I~d~d~~   95 (108)
T 1vk1_A           87 SVILDYFPF   95 (108)
T ss_dssp             EEEECTTSS
T ss_pred             EEEEECCCC
T ss_conf             899837936


No 4  
>>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} (A:)
Probab=99.80  E-value=3.6e-20  Score=149.16  Aligned_cols=97  Identities=12%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             CCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEECC----CCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             0134566024038982357899987689889999999886310015-5046205----6544533357567777764210
Q gi|254780805|r   32 TETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQ-PLIVRAI----DNGLYKIIAGERRFRAAKMASL  106 (300)
Q Consensus        32 ~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lq-Pi~Vr~~----~~g~y~ii~G~rR~rAa~~~g~  106 (300)
                      .......+..||+++|.|  +|||+ |+++.+++|++||+++|+++ |++||+.    ++|+|+|++|||||+|++.+|+
T Consensus         7 ~~~~~~~i~~i~i~~i~~--~~~r~-~~~~~i~~L~~SI~~~G~~~ppivvr~~~~~~~~~~y~ii~G~rR~~A~~~lg~   83 (110)
T 1xw3_A            7 HSGRIAAVHNVPLSVLIR--PLPSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQR   83 (110)
T ss_dssp             CCCCCEEEEEEEGGGEEC--CSCCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTC
T ss_pred             CCCCCCEEEEECHHHCCC--CCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHCCC
T ss_conf             348867379946899689--99998-899999999999997640067627985036788841899844889999987698


Q ss_pred             CCCCCCCCCCCCHHH--HHHHHHHHHH
Q ss_conf             013543334641123--4556665431
Q gi|254780805|r  107 SEVPVIIRNVDNKSS--LEIAIVENVQ  131 (300)
Q Consensus       107 ~~ip~iv~~~~d~~~--~~~~l~EN~~  131 (300)
                      ++|||+|+++++.++  +.++++||+|
T Consensus        84 ~~ip~~v~~~~~~e~~~~~~~l~eN~Q  110 (110)
T 1xw3_A           84 ETIPAKLVQSTLSDLRVYLGASTPDLQ  110 (110)
T ss_dssp             SEEEEEEEEECHHHHHHHHGGGCCCCC
T ss_pred             CEEEEEEEECCHHHHHHHHHCCCCCCC
T ss_conf             865089998999999998733582349


No 5  
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=99.73  E-value=2.3e-18  Score=137.61  Aligned_cols=76  Identities=30%  Similarity=0.468  Sum_probs=72.0

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77777642100135433346411234556665431022104899999998521011104679999743378778656565
Q gi|254780805|r   97 RFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus        97 R~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ||+||+.+|+++|||+|++.+|.+   .+++||+||+||+|+|+|.+|++|++. |+|++++|+++|+|++||+++|+|+
T Consensus         1 R~rA~~~ag~~~ip~iV~~~~d~~---~~l~EN~~R~~ls~~e~a~~~~~l~~~-g~s~~~iA~~lg~s~~~V~~~l~Ll   76 (76)
T 1r71_A            1 RYRGSKWAGKKSIPAFIDNDYNEA---DQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLL   76 (76)
T ss_dssp             ----------------------CC---HHHHHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGG
T ss_pred             CHHHHHHCCCCCCCEEECCCCCHH---HHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             928898759984336861664469---999998650689999999999999983-8989999999888999999999980


No 6  
>>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A (A:1-81)
Probab=99.65  E-value=1.2e-16  Score=126.48  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=71.2

Q ss_pred             HHHC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHCCH
Q ss_conf             4310-22104899999998521011104679999743378778656565435899998764-2101677777640100
Q gi|254780805|r  129 NVQR-KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRK-EEISLGHARTLVSTSD  204 (300)
Q Consensus       129 N~~R-~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~-~~is~ghar~Ll~~~~  204 (300)
                      |+|| +||||+|+|.+|+++++. |+||+++|+++|+|+++|+|.|++++||++|++++.. +.||.+||++|+.+.+
T Consensus         1 niQr~edls~~E~a~~y~~~l~~-g~tQ~elA~~lg~S~s~Vs~~l~la~LP~~vi~~f~~~~~ls~~~a~~L~~l~~   77 (81)
T 1zx4_A            1 DVQTALQHSIREIGLRLXRXKND-GXSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGD   77 (81)
T ss_dssp             ----CCSSCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             96435658899999999999987-999999999989799999999999849999999730667777159999999998


No 7  
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=99.46  E-value=7.3e-14  Score=108.66  Aligned_cols=59  Identities=53%  Similarity=0.858  Sum_probs=56.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             411234556665431022104899999998521011104679999743378778656565
Q gi|254780805|r  117 DNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       117 ~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +|+++..++++||+||+||+|+|+|.+|++|++. |+|++++|+++|+|++||+++|+||
T Consensus         1 sd~~a~~~~l~EN~qR~dl~p~E~a~a~~~l~~~-g~s~~~iA~~~G~s~~~V~~~L~LL   59 (59)
T 1vz0_A            1 TDREALELALVENLQREDLSPVEEARGYQALLEM-GLTQEEVARRVGKARSTVANALRLL   59 (59)
T ss_dssp             CHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred             CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             8378999999998660589999999999989998-8729999987599999985677664


No 8  
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:159-230)
Probab=99.39  E-value=1.8e-13  Score=106.12  Aligned_cols=62  Identities=29%  Similarity=0.399  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf             4358999987642101677777640100--4689999742224778999999764102222223
Q gi|254780805|r  177 KLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKK  238 (300)
Q Consensus       177 ~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~~Ii~~~LSVRe~E~lVk~~~~~~~~~kk  238 (300)
                      +||++||++|.+|.||+||||+|+++++  +.+++++|+.++||||++|++|+.+..+...+++
T Consensus         1 kLp~~vq~~i~~g~is~GHARaLL~L~~~~q~~~~~~ii~~~lsVR~~E~~v~~~~~~~~~~~~   64 (72)
T 1vz0_A            1 QLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAE   64 (72)
T ss_dssp             GSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCCCHHHHCC--------------
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             1336777777528732789998852997999999999998499999999999986328988878


No 9  
>>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural genomics, PSI-2, protein structure initiative; 2.61A {Agrobacterium tumefaciens str} (A:)
Probab=96.95  E-value=0.0012  Score=42.95  Aligned_cols=82  Identities=12%  Similarity=0.033  Sum_probs=54.0

Q ss_pred             CCCCEEEEHHHCCCCCCCCCCCCCHH--HHHHHHHHHHH--CCCC--CCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             56602403898235789998768988--99999998863--1001--550462056544533357567777764210013
Q gi|254780805|r   36 PESQDCISIHSIVPNPHNPRNYFESE--GLEDLCQSIKS--HGII--QPLIVRAIDNGLYKIIAGERRFRAAKMASLSEV  109 (300)
Q Consensus        36 ~~~~~~i~i~~i~~~p~~pR~~~~~~--~l~eLa~SI~~--~G~l--qPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~i  109 (300)
                      .+...+|+|+++.|-  |..--+++-  +..++..-.++  ...+  .|+.|...++|+|.|++||+|.+|+..+|..+|
T Consensus         6 ~~~l~~V~i~~L~PT--Q~~VG~~Ev~~k~~~~~~~~~~~~~~~l~~~pipvVigp~g~lylvDgHH~~~Al~~~g~~~v   83 (205)
T 2hwj_A            6 EPRLSRIAIDKLRPT--QIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHV   83 (205)
T ss_dssp             SCBEEEEEGGGCBCS--BSEECHHHHHHHHHHHHTCC-----CCTTCBEEEEEECSTTCEEECSCHHHHHHHHHTTCCEE
T ss_pred             CCCEEEEEHHHCCCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCEEEECCHHHHHHHHHCCCCEE
T ss_conf             882578688873783--375769999999999986088899999856985489889998677766078889987488648


Q ss_pred             CCCCC-CCCCH
Q ss_conf             54333-46411
Q gi|254780805|r  110 PVIIR-NVDNK  119 (300)
Q Consensus       110 p~iv~-~~~d~  119 (300)
                      +++|. |+++.
T Consensus        84 ~~~Vi~dls~~   94 (205)
T 2hwj_A           84 LTSEVAKFSHL   94 (205)
T ss_dssp             EEEEEEECTTS
T ss_pred             EEEEEEECCCC
T ss_conf             99997523559


No 10 
>>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} (A:1-122)
Probab=94.82  E-value=0.057  Score=32.25  Aligned_cols=55  Identities=18%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             112345566654310221048999999985210111046799997433787786565
Q gi|254780805|r  118 NKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       118 d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++.+-.-.-+|.+-|+|  |..-+.-++..+..+.++|.++|...|.|.|+||..|.
T Consensus        12 eE~~d~~~eVe~llr~d--~~~v~~eIK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~   66 (122)
T 2h8r_A           12 EEAAEQRAEVDRMLSED--PWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN   66 (122)
T ss_dssp             HHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHC--HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHC
T ss_conf             85422121158887558--99999999999988698636554443777427999976


No 11 
>>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} (A:1-85)
Probab=94.71  E-value=0.058  Score=32.18  Aligned_cols=55  Identities=20%  Similarity=0.326  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             112345566654310221048999999985210111046799997433787786565
Q gi|254780805|r  118 NKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       118 d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++....-.-+|.+-|+|  |..-+.-++..+..++++|..+|+..|.|.|+||..|.
T Consensus        11 eE~~~~~~~Veellr~d--~~~v~~eIK~Fl~~~~I~Q~~Va~~TGisQS~iSq~L~   65 (85)
T 1ic8_A           11 EEAAHQKAVVETLLQED--PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN   65 (85)
T ss_dssp             HHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHC
T ss_conf             88888999999998607--09999999999987389602200344657789998831


No 12 
>>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} (A:)
Probab=94.19  E-value=0.059  Score=32.14  Aligned_cols=53  Identities=13%  Similarity=0.161  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHH
Q ss_conf             489999999852101110467999974337877865656-5-4358999987642
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI-L-KLPSSVREMIRKE  189 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL-l-~L~~~i~~~l~~~  189 (300)
                      ...-+..++.+..+.|+||.++|+++|.|+++|+++.+= . ..+.+....+...
T Consensus        38 ~~~i~~~l~~~R~~~glsq~~lA~~~Gis~s~is~~e~g~~~~ps~~~l~~la~~   92 (120)
T 2o38_A           38 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLXTLLNA   92 (120)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             9999999999999869857656676288847768997188224489999999998


No 13 
>>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} (A:)
Probab=94.06  E-value=0.065  Score=31.88  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999985210111046799997433787786565
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..-+.-++.+..+.|+||.++|+++|.|+++|+++.+
T Consensus        17 ~~i~~~lk~~r~~~gltq~elA~~~Gis~~~is~~e~   53 (83)
T 2a6c_A           17 SQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLXR   53 (83)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf             9999999999999699889999998557635558862


No 14 
>>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} (A:1-73)
Probab=94.03  E-value=0.074  Score=31.51  Aligned_cols=44  Identities=14%  Similarity=0.156  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565654
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .++...-+..++.+.++.|+||.++|+.+|.|+++|+++..=-.
T Consensus         7 ~~~~~~i~~~ik~lr~~~~lsq~elA~~lgis~~~i~~~e~G~~   50 (73)
T 3ivp_A            7 KYDFRALGLAIKEARKKQGLTREQVGAXIEIDPRYLTNIENKGQ   50 (73)
T ss_dssp             SCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCC
T ss_pred             HCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             04899999999999998399999997653989749998962467


No 15 
>>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} (A:)
Probab=93.97  E-value=0.069  Score=31.72  Aligned_cols=42  Identities=17%  Similarity=0.148  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999998521011104679999743378778656565435
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      ..-+..++.+....|+||+++|+.+|.|+++|+++.+=-.-|
T Consensus         8 ~~ig~~lk~~r~~~g~sq~~lA~~~gis~~tis~~e~G~~~p   49 (94)
T 2kpj_A            8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIP   49 (94)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHH
T ss_conf             999999999999909999999998853005678876010004


No 16 
>>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A (A:1-70)
Probab=93.82  E-value=0.071  Score=31.62  Aligned_cols=48  Identities=8%  Similarity=0.126  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111-046799997433787786565654358999987
Q gi|254780805|r  139 EEALGYEQLISEYGY-TQNDIGSIVGKSRSHVANILRILKLPSSVREMI  186 (300)
Q Consensus       139 e~A~~~~~l~~~~~~-t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l  186 (300)
                      .-+..++++....|+ ||.++|+.+|.|+++|+++.+=-..|.+....+
T Consensus         6 ~~~~ri~~~r~~~g~~tq~~lA~~lgis~~~is~~e~g~~~p~~~l~~i   54 (70)
T 2fjr_A            6 SNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHC   54 (70)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH
T ss_conf             7899999999980987699999997969999999982898666899999


No 17 
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=93.74  E-value=0.088  Score=31.03  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=23.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11104679999743378778656565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .|+||.|||+++|.||++|+++|...
T Consensus        20 ~gltQ~eIA~~lgiSR~~VsRlL~~A   45 (54)
T 2w48_A           20 QDMTQAQIARELGIYRTTISRLLKRG   45 (54)
T ss_dssp             SCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             49999999998698999999999999


No 18 
>>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A (A:)
Probab=93.74  E-value=0.062  Score=31.98  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565654
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .-+..++++..+.|+||.++|+++|.|+++|+++..=-.
T Consensus        28 ~i~~~lk~~r~~~gltq~elA~~~gis~~~i~~~e~G~~   66 (99)
T 3g5g_A           28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR   66 (99)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999998499999999656774238999974234


No 19 
>>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} (L:)
Probab=93.62  E-value=0.042  Score=33.09  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999998521011104679999743378778656565
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ..-+..++.+.++.|+||.++|+.+|.|+++|+++.+=-
T Consensus         4 ~~i~~~lk~~r~~~~ls~~~la~~~gis~~~i~~~e~g~   42 (68)
T 2r1j_L            4 QLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSE   42 (68)
T ss_dssp             CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             999999999999849999999989697999999998799


No 20 
>>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A (A:)
Probab=93.46  E-value=0.086  Score=31.08  Aligned_cols=51  Identities=10%  Similarity=0.067  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             489999999852101110467999974337877865656-543589999876
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR  187 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~  187 (300)
                      ...-+..++.+....|+||.++|+.+|.|+++|+++.+= ...+.+....+.
T Consensus        26 ~~~ig~~l~~~R~~~g~tq~elA~~~gis~~~is~~e~g~~~ps~~~l~~ia   77 (117)
T 3f52_A           26 REALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVC   77 (117)
T ss_dssp             HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             9999999999999959899999988603077899997530327699999999


No 21 
>>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:)
Probab=93.37  E-value=0.12  Score=30.23  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=25.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011104679999743378778656565
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +......+ ++||.+||+++|.|+++|+++|+-+
T Consensus        22 ~~~~yy~e-~~tq~eIA~~LgiSr~~V~r~L~~a   54 (200)
T 2p8t_A           22 AVIFLLKE-PLGRKQISERLELGEGSVRTLLRKL   54 (200)
T ss_dssp             HHHHHTTS-CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99998348-8558999988098278999999999


No 22 
>>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (A:1-65)
Probab=93.35  E-value=0.079  Score=31.33  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999852101110467999974337877865656
Q gi|254780805|r  142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      .-++.+..+.|+||+++|+++|.|+++|+++..=
T Consensus         4 ~~l~~lr~~~g~sq~~lA~~~gis~~~i~~~e~g   37 (65)
T 1b0n_A            4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERN   37 (65)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf             9999999984999999987858679999999879


No 23 
>>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} (A:)
Probab=93.34  E-value=0.08  Score=31.30  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999852101110467999974337877865656
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      -+..++.+..+.|+||+++|+++|.++++|+++.+=
T Consensus        11 ig~~lk~~r~~~glsq~ela~~~gis~~~i~~~e~g   46 (84)
T 2ef8_A           11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESF   46 (84)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCC
T ss_conf             999999999985999999999854158779999839


No 24 
>>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} (3:)
Probab=93.26  E-value=0.079  Score=31.32  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999852101110467999974337877865656
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      -+..++++..+.|+||+++|+++|.|+++|+++.+=
T Consensus        18 ~g~~lk~~R~~~g~sq~elA~~~gis~~~i~~~E~G   53 (92)
T 1lmb_3           18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG   53 (92)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf             999999999992999999998888788579999759


No 25 
>>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} (A:)
Probab=93.16  E-value=0.089  Score=30.98  Aligned_cols=34  Identities=12%  Similarity=0.242  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++.+..+.|+||+++|+.+|.|+++|+++.+
T Consensus         3 g~~lk~~R~~~gltq~~la~~~gvs~~~i~~~E~   36 (69)
T 1r69_A            3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN   36 (69)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
T ss_conf             9999999999499999997850989999999987


No 26 
>>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} (A:1-76)
Probab=93.15  E-value=0.085  Score=31.11  Aligned_cols=39  Identities=18%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565654
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .-+..++.+....|+||.++|+++|.|+++|+++..=-.
T Consensus        11 ~~~~~lk~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~   49 (76)
T 1y9q_A           11 QIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGES   49 (76)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             999999999998299999999998949999999976997


No 27 
>>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} (A:)
Probab=93.12  E-value=0.067  Score=31.79  Aligned_cols=39  Identities=13%  Similarity=0.082  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656565435
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      +..++++..+.|+||+++|+.+|.|+++|+++.+=-..|
T Consensus        13 g~~ir~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p   51 (73)
T 3fmy_A           13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXP   51 (73)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf             999999999869999999999798999999999499899


No 28 
>>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} (A:)
Probab=93.12  E-value=0.082  Score=31.22  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++.+....|+||.++|..+|.|+++|+++.+
T Consensus        16 g~~lk~~R~~~gltq~~lA~~~gis~~~is~~E~   49 (86)
T 3eus_A           16 CQRLRQARLDAGLTQADLAERLDKPQSFVAKVET   49 (86)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999998499999999997969999999988


No 29 
>>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* (B:)
Probab=93.06  E-value=0.14  Score=29.71  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=34.9

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04899999998521011104679999743378778656565435
Q gi|254780805|r  136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      ....-+..++.+....|+||.++|+.+|.|+++|+++.+=-..|
T Consensus         9 ~~~~i~~~lk~~R~~~g~sq~elA~~~gis~~~is~~e~G~~~p   52 (88)
T 2wiu_B            9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNT   52 (88)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGC
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCC
T ss_conf             99999999999999859999999786399899999998799999


No 30 
>>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=93.01  E-value=0.12  Score=30.13  Aligned_cols=40  Identities=20%  Similarity=0.131  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4899999998521011104679999743378778656565
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ...-+..++.+....|+||.++|+.+|.|+++|+++.+=-
T Consensus        11 ~~~ig~~ik~~R~~~~ltq~~lA~~~gis~~~is~~e~g~   50 (91)
T 1x57_A           11 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGR   50 (91)
T ss_dssp             CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             7999999999999818869999998099999999997699


No 31 
>>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} (A:)
Probab=92.94  E-value=0.086  Score=31.10  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565654
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      -+..++.+..+.|+||+++|+++|.|+++|+++..=-.
T Consensus        13 ~~~~l~~~R~~~glsq~~lA~~~gis~~~i~~~e~G~~   50 (80)
T 3kz3_A           13 LKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGIN   50 (80)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             99999999999599899999878804979999888999


No 32 
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=92.81  E-value=0.1  Score=30.65  Aligned_cols=39  Identities=10%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             048999999985210111046799997433787786565
Q gi|254780805|r  136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|.--+.-++..++.+|+|+.++|+.+|.|+++|+..+.
T Consensus        15 ~p~HPGeiL~e~Le~~gis~~~lA~~lgvs~~~is~Ii~   53 (56)
T 3cec_A           15 RPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVIN   53 (56)
T ss_dssp             CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             998833999999998799999999997827899999981


No 33 
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=92.67  E-value=0.11  Score=30.35  Aligned_cols=37  Identities=8%  Similarity=0.058  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4899999998521011104679999743378778656
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |.-=..-++..++.+|+|+.++|+++|.|+++|++.+
T Consensus         6 P~HPGe~L~E~Le~~gis~~~lA~~lgvs~~~is~ii   42 (46)
T 2ict_A            6 HPRPGDIIQESLDELNVSLREFARAXEIAPSTASRLL   42 (46)
T ss_dssp             CCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9887899999999979999999999977789999998


No 34 
>>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} (A:)
Probab=92.62  E-value=0.11  Score=30.44  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++.+..+.|+||+++|+++|.|+++|+++.+
T Consensus         9 ~~~i~~~r~~~~~tq~~la~~~gis~~~i~~~e~   42 (78)
T 3b7h_A            9 SEHLMELITQQNLTINRVATLAGLNQSTVNAMFE   42 (78)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999998599999999997989999999997


No 35 
>>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} (A:)
Probab=92.55  E-value=0.11  Score=30.29  Aligned_cols=38  Identities=18%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998521011104679999743378778656565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .-+..++.+....|+||+++|+++|.|+++|+++..=-
T Consensus        14 ~ig~~lk~~R~~~glt~~~la~~~gis~~~i~~~e~g~   51 (83)
T 3f6w_A           14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAE   51 (83)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf             99999999999829999999988538999999998799


No 36 
>>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} (A:)
Probab=92.48  E-value=0.084  Score=31.14  Aligned_cols=46  Identities=11%  Similarity=0.010  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565654358999987
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI  186 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l  186 (300)
                      +.-++.+..+.|+||.++|+.+|.|+++|+++.+=-..|.+....+
T Consensus         5 g~rlk~~r~~~g~sq~~lA~~~gis~~~is~~e~g~~~~~~~l~~i   50 (71)
T 1zug_A            5 SERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEI   50 (71)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             9999999998499999999997158999999987999999999999


No 37 
>>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:)
Probab=92.45  E-value=0.13  Score=29.96  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999852101110467999974337877865656
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      .-+..++.+....|+||.++|+++|.|+++|+++..=
T Consensus        11 ~~~~~lk~~r~~~glsq~~lA~~~gvs~~~i~~~e~G   47 (82)
T 3clc_A           11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERN   47 (82)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCC
T ss_conf             9999999999984999999961557479899999769


No 38 
>>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} (A:)
Probab=92.39  E-value=0.13  Score=29.93  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .-+..++.+....|+||.++|+.+|.|+++|+++.+
T Consensus        13 ~~~~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~   48 (74)
T 1y7y_A           13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER   48 (74)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             999999999998099999999898969999999987


No 39 
>>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} (A:1-96)
Probab=92.37  E-value=0.13  Score=29.94  Aligned_cols=33  Identities=9%  Similarity=0.198  Sum_probs=28.2

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101110467999974337877865656
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      -++.+....|+||.++|+++|.|+++|+++.+=
T Consensus        15 ~lk~~R~~~gltq~~lA~~~gis~~~is~~e~g   47 (96)
T 2eby_A           15 LLYEYLEPLDLKINELAELLHVHRNSVSALINN   47 (96)
T ss_dssp             HHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf             999987767999999999878899999999938


No 40 
>>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} (A:)
Probab=92.35  E-value=0.14  Score=29.69  Aligned_cols=34  Identities=24%  Similarity=0.202  Sum_probs=26.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ..|...+.|+||.++|+++|.|+++|+++.+=-.
T Consensus        41 ~~R~r~~~gltq~~lA~~~Gvs~~~is~~E~G~~   74 (107)
T 2jvl_A           41 QGRQKFEPTMTQAELGKEIGETAATVASYERGTA   74 (107)
T ss_dssp             HHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCS
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             9999988699999998764739999999986987


No 41 
>>1adr_A P22 C2 repressor; transcription regulation; NMR {Bacteriophage P22} (A:)
Probab=92.32  E-value=0.088  Score=31.03  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998521011104679999743378778656565435
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      -+.-++.+..+.|+|+.++|+++|.|+++++++..=-..|
T Consensus         6 ~~~rlk~~r~~~g~t~~ela~~~gis~~~i~~~e~g~~~p   45 (76)
T 1adr_A            6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEP   45 (76)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf             9999999999939999999999697998999998799899


No 42 
>>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} (A:)
Probab=92.23  E-value=0.14  Score=29.73  Aligned_cols=35  Identities=14%  Similarity=0.343  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+.-++.+..+.|+||.++|+.+|.++++|+++.+
T Consensus        11 i~~~l~~~r~~~gltq~~la~~~gis~~~i~~~e~   45 (77)
T 2b5a_A           11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER   45 (77)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             99999999998099999999896979999999985


No 43 
>>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} (A:)
Probab=92.12  E-value=0.11  Score=30.36  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.+....|+||+++|+.+|.|+++++++..=..
T Consensus         6 lk~~R~~~g~tq~~lA~~~gis~s~is~~e~g~~   39 (66)
T 1utx_A            6 LKLIREKKKISQSELAALLEVSRQTINGIEKNKY   39 (66)
T ss_dssp             HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             9999998599999999975969999999987997


No 44 
>>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* (A:72-133)
Probab=91.86  E-value=0.12  Score=30.11  Aligned_cols=39  Identities=13%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656565435
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      +.-++.+..+.|+||.++|+.+|.|+++|+++-+=-..|
T Consensus         2 g~~ik~~R~~~gltq~~lA~~~gis~~~is~~E~g~~~p   40 (62)
T 3gn5_A            2 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQP   40 (62)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCC
T ss_conf             999999999849999999988099999999998699889


No 45 
>>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} (A:1-68)
Probab=91.82  E-value=0.13  Score=30.04  Aligned_cols=31  Identities=6%  Similarity=-0.012  Sum_probs=27.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999852101110467999974337877865
Q gi|254780805|r  142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANI  172 (300)
Q Consensus       142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~  172 (300)
                      .-++.+....|+||.++|..+|.|+.+|++.
T Consensus        33 ~~ik~lR~~~gLSQ~~fA~~lGVs~~ti~~W   63 (68)
T 2ppx_A           33 PRIKIIRRALKLTQEEFSARYHIPLGTLRDW   63 (68)
T ss_dssp             CHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             9999999994999999999967659999999


No 46 
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=91.80  E-value=0.093  Score=30.88  Aligned_cols=38  Identities=18%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|=..+ ...+|.+. |.+..+||+.+|.|+++|.++|.
T Consensus         6 lt~eq~~-~a~~l~~~-G~s~~~iA~~~gVSr~TiYr~l~   43 (52)
T 1jko_C            6 INKHEQE-QISRLLEK-GHPRQQLAIIFGIGVSTLYRYFP   43 (52)
T ss_dssp             SCTTHHH-HHHHHHHT-TCCHHHHHHTTSCCHHHHHHHSC
T ss_pred             CCHHHHH-HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999999-99999987-99899999998979999999845


No 47 
>>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} (A:)
Probab=91.61  E-value=0.18  Score=29.11  Aligned_cols=39  Identities=8%  Similarity=-0.009  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf             9999999852101110467999974--33787786565654
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVG--KSRSHVANILRILK  177 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G--~s~s~V~~~LrLl~  177 (300)
                      .-+..++++..+.|+||+++|+.+|  .|+++|+++.+=-.
T Consensus         8 ~ig~~ik~~R~~~gltq~~lA~~~G~~vs~~~is~~E~g~~   48 (71)
T 2ewt_A            8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDR   48 (71)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf             99999999999862638999999778738999999997001


No 48 
>>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} (A:)
Probab=91.53  E-value=0.17  Score=29.26  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++++..+.|+||+++|+++|.|+++|+++-+
T Consensus         5 g~~lr~~R~~~glt~~elA~~~gis~~~is~~E~   38 (130)
T 3fym_A            5 GEALKGRRERLGMTLTELEQRTGIKREMLVHIEN   38 (130)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999999699999999882989999999985


No 49 
>>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} (A:)
Probab=91.37  E-value=0.16  Score=29.40  Aligned_cols=35  Identities=14%  Similarity=0.112  Sum_probs=29.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111046799997433787786565654
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .++++....|+||+++|+++|.|+++++++.+=..
T Consensus        14 ~ik~~R~~~gltq~~lA~~~gis~~~is~~e~g~~   48 (76)
T 3bs3_A           14 RIKVVLAEKQRTNRWLAEQXGKSENTISRWCSNKS   48 (76)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSS
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCH
T ss_conf             99999999599899997664622588888850210


No 50 
>>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} (A:)
Probab=90.84  E-value=0.051  Score=32.55  Aligned_cols=39  Identities=21%  Similarity=0.131  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656565435
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      +..++++....|+||+++|+++|.|+++|+++-+=..-|
T Consensus         3 g~~ik~~R~~~gltq~eLA~~~gis~~~is~~E~G~~~p   41 (158)
T 2p5t_A            3 GKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSV   41 (158)
T ss_dssp             ---------------------------------------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC
T ss_conf             899999999849999999999796999999998699899


No 51 
>>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=90.73  E-value=0.32  Score=27.39  Aligned_cols=39  Identities=10%  Similarity=-0.001  Sum_probs=28.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHH
Q ss_conf             101110467999974337877865656-5435-89999876
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILRI-LKLP-SSVREMIR  187 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~LrL-l~L~-~~i~~~l~  187 (300)
                      ...|+||+++|+++|.|+++|+++.+= ...| -+....+.
T Consensus        24 ~r~g~tq~~LA~~~gis~~~is~ie~G~~~~ps~~~l~~ia   64 (86)
T 2ofy_A           24 ARGDXSXVTVAFDAGISVETLRKIETGRIATPAFFTIAAVA   64 (86)
T ss_dssp             HHTTSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             99808999999997078999999982986668999999999


No 52 
>>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:)
Probab=90.51  E-value=0.37  Score=27.01  Aligned_cols=119  Identities=16%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH---H
Q ss_conf             899999998521011104679999743-378778656565435899998764210167777764010046899997---4
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGK-SRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVI---V  213 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~-s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~I---i  213 (300)
                      -|.+..+..++. .|.|..+||..+|. |++|+.+.+   +-.|+..+.+..+....           ...+++.+   +
T Consensus        18 ~e~~~~i~~~~~-~G~s~~~Ia~~~gips~~Tl~~W~---~~~~ef~e~~~~ak~~~-----------~~~v~~~l~~~A   82 (143)
T 3hef_A           18 PEVADDICSLLS-SGESLLKVCKRPGMPDKSTVFRWL---AKHEDFRDKYAKATEAR-----------ADSIFEEIFEIA   82 (143)
T ss_dssp             HHHHHHHHHHHH-TTCCHHHHHTSTTCCCHHHHHHHT---TTCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCCHHHHHHCCCCCCHHHHHHHH---HHCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_conf             999999999998-798799998727999689999999---81789999999999999-----------999999999999


Q ss_pred             HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCC-CEEEEEEECCHHHHH
Q ss_conf             22247789999997641022222234566556897899999999997398799971798-228999858989999
Q gi|254780805|r  214 SKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNN-KGQFCIKYETNEQLK  287 (300)
Q Consensus       214 ~~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~~~~~-kGkI~I~f~s~eeLe  287 (300)
                      .+..--..+.+.++                ......+--|.+...+..|.|+++.+.+. .|-|.+.-..+++|+
T Consensus        83 ~~~~~~~~~~~~~~----------------~~~~A~~f~L~~~~p~~y~dk~~~e~tg~~g~~i~~~~~~~~~l~  141 (143)
T 3hef_A           83 DNAIPDAAEVAKAR----------------LRVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMSTLF  141 (143)
T ss_dssp             HTCCSSHHHHHHHH----------------HHHHHHHHHHHHHSHHHHSCCEEEEEECGGGSCCCEEEC------
T ss_pred             HCCCCCHHHHHHHH----------------HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCEEEEECCCHHHC
T ss_conf             60113527887777----------------888899999972681313654320035789986588732405332


No 53 
>>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} (A:1-73)
Probab=89.52  E-value=1.1  Score=24.09  Aligned_cols=40  Identities=18%  Similarity=0.096  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|+|-+....+.+..  .|+|..+||+.+|.|.++|.+++.
T Consensus        21 ~~L~~~~r~v~~l~~~--~g~s~~eIA~~lgis~~~v~~~l~   60 (73)
T 1s7o_A           21 ALLTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIK   60 (73)
T ss_dssp             GGSCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             4399999999999999--731299999998979999999999


No 54 
>>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} (A:)
Probab=88.86  E-value=0.091  Score=30.93  Aligned_cols=23  Identities=4%  Similarity=0.050  Sum_probs=16.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+||.+||+++|.||++|+++|.
T Consensus        34 ~~tQ~eIA~~l~isr~~Vsr~l~   56 (345)
T 2o0m_A           34 PIGRRSLSETXGITERVLRTETD   56 (345)
T ss_dssp             -----------------------
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             96899999884997889999999


No 55 
>>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:)
Probab=88.76  E-value=0.41  Score=26.76  Aligned_cols=34  Identities=9%  Similarity=0.108  Sum_probs=27.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011104679999743378778656565
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .+...+..++.+..++|+.+|.||+++.++|+=.
T Consensus        55 ~i~~~L~~~~gn~~~aA~~LGisR~TL~rklkk~   88 (91)
T 1ntc_A           55 LLTTALRHTQGHKQEAARLLGWGAATLTAKLKEL   88 (91)
T ss_dssp             HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999949949999999798999999999987


No 56 
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:1-53)
Probab=88.54  E-value=0.61  Score=25.64  Aligned_cols=39  Identities=15%  Similarity=0.248  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+..|.|. +.-+.+ .|++..|||+++|+|+-.|+|+|.
T Consensus         6 ~Lt~~E~~~-I~~~~~-~g~s~~eIArki~RS~~vi~nylk   44 (53)
T 1u78_A            6 ALSDTERAQ-LDVMKL-LNVSLHEMSRKISRSRHCIRVYLK   44 (53)
T ss_dssp             CCCHHHHHH-HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHH-HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             799999999-999999-799999999998958999999999


No 57 
>>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:)
Probab=86.80  E-value=0.99  Score=24.27  Aligned_cols=42  Identities=19%  Similarity=0.162  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999852-1-0111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLI-S-EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~-~-~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-++..-..+.. . ..++|+.+||+.+|.|+++|++.+.
T Consensus        17 ~~L~~~~r~vl~lry~l~~~e~~s~~EIA~~lgis~~~V~~~~~   60 (87)
T 1tty_A           17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV   60 (87)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             64999999999997177899956699999996988999999999


No 58 
>>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} (A:1-67)
Probab=86.70  E-value=1  Score=24.23  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=38.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565654358999987642
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKE  189 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~  189 (300)
                      |..|+.-|.-..++++-+--.+++.+||+.+|.+++||+..++   =-+.+...+..+
T Consensus         5 r~~ltl~eK~~ii~~~e~g~~~s~~~iAr~~gi~~STis~IlK---~k~~i~~~~~~~   59 (67)
T 1hlv_A            5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK---NKRAILASERKY   59 (67)
T ss_dssp             SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH---THHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHHHH
T ss_conf             1301278774899998739751100677750898488999996---048887665454


No 59 
>>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} (A:117-194)
Probab=86.11  E-value=0.87  Score=24.65  Aligned_cols=40  Identities=13%  Similarity=0.001  Sum_probs=30.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             210489999999852101110467999974337877865656
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      .|+|-+....+....  .|+|..+||+.+|.|.++|.+++.-
T Consensus        24 ~L~~~~r~i~~l~~~--~~~s~~eIA~~lgis~~tv~~~l~r   63 (78)
T 1or7_A           24 SLPEDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIFR   63 (78)
T ss_dssp             HSCHHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             099999999999998--0979999999989499999999999


No 60 
>>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122)
Probab=86.08  E-value=0.73  Score=25.12  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=28.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111046799997433787786565654
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      -+..|.+..+.+..+|++.+|.|+++|+++|+.|.
T Consensus        20 Il~~L~~~~~~~v~eL~~~l~is~s~vs~HL~~L~   54 (95)
T 1u2w_A           20 ITYALCQDEELCVCDIANILGVTIANASHHLRTLY   54 (95)
T ss_dssp             HHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999887990699999888457007999999999


No 61 
>>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:)
Probab=85.92  E-value=0.92  Score=24.47  Aligned_cols=40  Identities=8%  Similarity=0.074  Sum_probs=29.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10489999999852101110467999974337877865656
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      +.-+|... +...++.+++...++|+.+|.|++|+.+.|+=
T Consensus        38 ~~~~E~~~-I~~aL~~~~gn~~~aA~~Lgisr~TL~rklkk   77 (81)
T 1umq_A           38 ADRVRWEH-IQRIYEMCDRNVSETARRLNMHRRTLQRILAK   77 (81)
T ss_dssp             HHHHHHHH-HHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999-99999999830999999969899999999997


No 62 
>>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122)
Probab=85.87  E-value=0.97  Score=24.32  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=25.9

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565654
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.+...+..+||+.+|.|+++|++.|+.|.
T Consensus        10 ~L~~~~~~~~ela~~l~~s~stvs~HL~~L~   40 (78)
T 1r1t_A           10 LLARSELCVGDLAQAIGVSESAVSHQLRSLR   40 (78)
T ss_dssp             HHTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9981995699999998919889999999999


No 63 
>>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} (A:173-236)
Probab=85.51  E-value=1.2  Score=23.69  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=30.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+.|+|-|.....  ++.+ |++..+||+.+|.|..+|.++++
T Consensus         1 ~~~LT~~E~~vl~--l~~~-G~~~~eIA~~l~iS~~tV~~~~~   40 (64)
T 2q0o_A            1 KQMLSPREMLCLV--WASK-GKTASVTANLTGINARTVQHYLD   40 (64)
T ss_dssp             GGSCCHHHHHHHH--HHHT-TCCHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             6779999999999--9875-99999999995999999999999


No 64 
>>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66)
Probab=85.25  E-value=1.4  Score=23.33  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=30.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999852101110467999974337877865656
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      ..|+.+|...- .-|.+....+..+||+.+|.|+++|.++++=
T Consensus        13 ~~ld~~D~~IL-~~L~~~~r~s~~ela~~lgls~~tv~~ri~~   54 (66)
T 2ia0_A           13 IHLDDLDRNIL-RLLKKDARLTISELSEQLKKPESTIHFRIKK   54 (66)
T ss_dssp             -CCCHHHHHHH-HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHH-HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             76389999999-9999848999999999989099999999999


No 65 
>>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} (A:)
Probab=85.18  E-value=0.83  Score=24.78  Aligned_cols=36  Identities=14%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_conf             1046799997433787786565----65435899998764
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILR----ILKLPSSVREMIRK  188 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~Lr----Ll~L~~~i~~~l~~  188 (300)
                      +|..++|+..|.|+++|++.|.    -...+++.++.|.+
T Consensus         1 vTi~dIA~~agvS~~TVSrvln~~~~~~~vs~~tr~rI~~   40 (65)
T 1uxc_A            1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMA   40 (65)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf             9899999998939999999977989878649999999999


No 66 
>>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} (A:1-76)
Probab=85.00  E-value=1.2  Score=23.64  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999852101110467999974337877865656
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      ..|+|-++..-+-+..  .|+|.++||+.+|.|.++|.++++-
T Consensus        24 ~~L~~~~r~il~l~~~--~g~s~~EIA~~l~is~~~v~~~~~r   64 (76)
T 1xsv_A           24 SLLTNKQRNYLELFYL--EDYSLSEIADTFNVSRQAVYDNIRR   64 (76)
T ss_dssp             GGSCHHHHHHHHHHHT--SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             6688999999999998--2865999999989699999999999


No 67 
>>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56)
Probab=84.81  E-value=1.3  Score=23.53  Aligned_cols=40  Identities=23%  Similarity=0.305  Sum_probs=29.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+++|... +..|......+..+||+.+|.|+++|.++++
T Consensus         4 ~lD~~D~~I-l~~Lq~~~r~~~~elA~~lg~S~~tv~~Ri~   43 (56)
T 2w25_A            4 ALDDIDRIL-VRELAADGRATLSELATRAGLSVSAVQSRVR   43 (56)
T ss_dssp             CCCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             572999999-9999984899999999998909999999999


No 68 
>>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} (A:90-239)
Probab=84.66  E-value=1.3  Score=23.55  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-+.-..+.+..  .|+|.++||+.+|.|.++|..++.
T Consensus        97 ~~L~~~~r~vi~l~~~--~g~s~~EIA~~lgis~~tV~~~l~  136 (150)
T 1rp3_A           97 SKLPEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA  136 (150)
T ss_dssp             TTSCHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             3799999999999926--999999999998959999999999


No 69 
>>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} (A:)
Probab=84.43  E-value=1.4  Score=23.22  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHHH-HHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985-210-111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQL-ISE-YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l-~~~-~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-|...-.-+. ++. .++|.+++|+.+|.|+++|++...
T Consensus         9 ~~L~erer~vi~lrygl~~~~~~t~~EIa~~lgiS~~~Vr~~~~   52 (73)
T 1ku3_A            9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN   52 (73)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             70999999999998188999987899999998979999999999


No 70 
>>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:)
Probab=84.32  E-value=0.93  Score=24.45  Aligned_cols=35  Identities=17%  Similarity=0.109  Sum_probs=28.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99852101110467999974337877865656543
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      +..|.+..+++..++|+.+|.|+++||..|+|.+.
T Consensus        33 L~~L~~~~~~~v~ela~~l~~s~stvS~HLkL~~a   67 (99)
T 2zkz_A           33 VNELYKHKALNVTQIIQILKLPQSTVSQHLCKXRG   67 (99)
T ss_dssp             HHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99997289946999999988698899999999982


No 71 
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=84.27  E-value=1.3  Score=23.52  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521-0111046799997433787786565654
Q gi|254780805|r  143 GYEQLIS-EYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       143 ~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+-+++. .-.+|.+++|+.+|.|+++|.+.+.-|.
T Consensus         9 ~Il~~L~~~~~is~~ela~~l~vS~~Ti~rdi~~L~   44 (64)
T 1bia_A            9 KLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR   44 (64)
T ss_dssp             HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999998569946899999997989999999999999


No 72 
>>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:)
Probab=84.25  E-value=1.6  Score=22.85  Aligned_cols=50  Identities=18%  Similarity=0.222  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             22104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      -+|++.+...-+.-+....++|+.+||+.+|.++++|++.+         +.+...|-|
T Consensus        17 ~~ls~~~~~vll~~l~~~~~~t~~eLa~~l~i~~~tvs~~l---------~~L~~~glI   66 (109)
T 2d1h_A           17 YKITDTDVAVLLKXVEIEKPITSEELADIFKLSKTTVENSL---------KKLIELGLV   66 (109)
T ss_dssp             HTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH---------HHHHHCCCC
T ss_conf             79599999999999984969899999999788723499999---------999987986


No 73 
>>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98)
Probab=84.13  E-value=1.2  Score=23.77  Aligned_cols=43  Identities=16%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10489999999852101110467999974337877865656543
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      +..+|... +.+.+..+++.+.+.|+.+|.||+++.+.|+-..+
T Consensus        10 ~~~~E~~~-I~~aL~~~~gn~s~aA~~Lgisr~tL~rklkk~~i   52 (53)
T 1eto_A           10 LAEVEQPL-LDMVMQYTLGNQTRAALMMGINRGTLRKKLKKYGM   52 (53)
T ss_dssp             HHHHHHHH-HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHH-HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             99999999-99999992998999999979899999999998585


No 74 
>>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} (B:)
Probab=84.10  E-value=1.8  Score=22.63  Aligned_cols=42  Identities=17%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             CCCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999852-1-0111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLI-S-EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~-~-~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-+.-.-.-+.. + ..|+|.++||+.+|.|+++|++.+.
T Consensus        17 ~~Lp~~~r~il~lry~~~~~~~~t~~eIa~~lgiS~~~V~~~~~   60 (81)
T 1tlh_B           17 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA   60 (81)
T ss_dssp             TTCCHHHHHHHHHHTCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             64999999999998178988756699999998978999999999


No 75 
>>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A (A:1-91)
Probab=83.88  E-value=1.6  Score=22.95  Aligned_cols=42  Identities=19%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      ++|++.+.|..++..+..++++|.--|+. +|+|+.+++..|+
T Consensus         2 e~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rsQGtlSdLL~   44 (91)
T 2d5v_A            2 EEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLR   44 (91)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHC
T ss_conf             6248999999999999876875999998700578517778863


No 76 
>>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:149-195)
Probab=83.87  E-value=1.5  Score=23.08  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|-|....  +++.. |+|..++|+.+|.|..+|.++++
T Consensus         2 LT~rE~~vl--~~l~~-G~s~~eIA~~L~iS~~TV~~~~~   38 (47)
T 3c3w_A            2 LTDQERTLL--GLLSE-GLTNKQIADRMFLAEKTVKNYVS   38 (47)
T ss_dssp             SCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             899999999--99995-79999999997887889999999


No 77 
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=83.66  E-value=1.4  Score=23.32  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=27.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111046799997433787786565654
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      -+..|.+..++|..+||+.+|.|+++|+..|+.|.
T Consensus        20 Il~~L~~~~~~~~~ela~~l~is~~tvs~HL~~L~   54 (90)
T 3cuo_A           20 ILCMLSGSPGTSAGELTRITGLSASATSQHLARMR   54 (90)
T ss_dssp             HHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999769994199999998929878999999999


No 78 
>>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183)
Probab=83.61  E-value=1.2  Score=23.76  Aligned_cols=31  Identities=16%  Similarity=0.287  Sum_probs=25.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111046799997433787786565
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -..+|.++ |+...+||+.+|.+|++|.+.|.
T Consensus         9 ~V~~L~~~-G~g~t~IAk~LgI~R~sVYriL~   39 (42)
T 1gdt_A            9 AVLNMWQQ-GLGASHISKTMNIARSTVYKVIN   39 (42)
T ss_dssp             HHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999987-99999999998929999999997


No 79 
>>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} (A:)
Probab=83.29  E-value=1.1  Score=24.06  Aligned_cols=48  Identities=15%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCC
Q ss_conf             998521011104679999743378778656565435899---9987642101
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSV---REMIRKEEIS  192 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i---~~~l~~~~is  192 (300)
                      +++.++.+| +|.++|+++|.|+++|++-+.=-.+|++.   .+.+-.|.++
T Consensus         4 l~~aI~~~G-~q~~lA~~~Gvs~~aV~~w~~g~~ip~~~~~~Ie~~T~G~Vt   54 (79)
T 3bd1_A            4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVI   54 (79)
T ss_dssp             HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTTTSSC
T ss_pred             HHHHHHHHC-CHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             999999958-999999991998999999880699998999999999578541


No 80 
>>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} (A:)
Probab=82.69  E-value=3.3  Score=20.89  Aligned_cols=39  Identities=23%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|++-|.-. + +++-+ |+|..+||..+|.|..+|.++++
T Consensus        20 ~~Lt~rE~~V-l-~ll~~-G~s~~~IA~~L~iS~~TV~~~~~   58 (82)
T 1je8_A           20 NQLTPRERDI-L-KLIAQ-GLPNKXIARRLDITESTVKVHVK   58 (82)
T ss_dssp             GGSCHHHHHH-H-HHHTT-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCCHHHHHH-H-HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             4089999999-9-99992-89999997684888999999999


No 81 
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53)
Probab=82.66  E-value=1.1  Score=23.92  Aligned_cols=30  Identities=10%  Similarity=0.222  Sum_probs=23.9

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             985210111046799997433787786565
Q gi|254780805|r  145 EQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .-|.+....+..++|+.+|.|+++|.++++
T Consensus        10 ~~L~~d~r~~~~elA~~lgvS~~tv~~ri~   39 (53)
T 2pn6_A           10 KILQYNAKYSLDEIAREIRIPKATLSYRIK   39 (53)
T ss_dssp             HHHTTCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999985999999999998919999999999


No 82 
>>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304)
Probab=82.47  E-value=1.3  Score=23.42  Aligned_cols=39  Identities=15%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.-+|.. .+.+.++.+++...+.|+.+|.|++++.+.|+
T Consensus        12 l~~~E~~-~I~~aL~~~~Gn~~~aA~~LGisr~TL~rklk   50 (51)
T 1ojl_A           12 LVDVEKE-VILAALEKTGGNKTEAARQLGITRKTLLAKLS   50 (51)
T ss_dssp             HHHHHHH-HHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred             HHHHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999-99999999299899999998889999999867


No 83 
>>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:1-105,A:403-429)
Probab=82.39  E-value=1.8  Score=22.54  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             999998521011104679999743378778656565435899998764210
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      ..-+.-+.+....|..+||+.+|.|+++|+++|+         +++..|-|
T Consensus        42 ~~IL~lL~~~g~~T~~eLA~~lgLS~~TVs~~L~---------~L~~~GlI   83 (132)
T 1z05_A           42 GRVYKLIDQKGPISRIDLSKESELAPASITKITR---------ELIDAHLI   83 (132)
T ss_dssp             HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSE
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCE
T ss_conf             9999999985991899999887969999999999---------99988968


No 84 
>>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} (A:199-258)
Probab=82.03  E-value=3.5  Score=20.73  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=22.8

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++-. |+|..+||+.+|.|.++|.++++
T Consensus        10 ~~~~-G~t~~eIA~~l~is~~TV~~~~~   36 (60)
T 3clo_A           10 CIRK-GLSSKEIAATLYISVNTVNRHRQ   36 (60)
T ss_dssp             HHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9985-99999999995999999999999


No 85 
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77)
Probab=81.93  E-value=2.3  Score=21.93  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+.+|... +..|......+..+||+.+|.|+++|.++++
T Consensus        24 ~ld~~D~~I-l~~Lq~d~r~s~~ela~~lgis~~tv~~ri~   63 (77)
T 2e1c_A           24 PLDEIDKKI-IKILQNDGKAPLREISKITGLAESTIHERIR   63 (77)
T ss_dssp             CCCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             847999999-9999983898999999998819899999999


No 86 
>>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:)
Probab=81.73  E-value=2.2  Score=22.06  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|.|-+...-+-+.  ..|+|.++||+.+|.|.++|..++.
T Consensus        15 ~L~~~~r~i~~l~~--~~~~s~~eIA~~l~is~~tV~~~l~   53 (70)
T 2o8x_A           15 DLTTDQREALLLTQ--LLGLSYADAAAVCGCPVGTIRSRVA   53 (70)
T ss_dssp             SSCHHHHHHHHHHH--TSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH--HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             79999999989999--9584799999997989999999999


No 87 
>>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:)
Probab=81.37  E-value=1.5  Score=23.18  Aligned_cols=43  Identities=19%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04899999998521011104679999743378778656565435
Q gi|254780805|r  136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      ..+|... +...+..+++.....|+.+|.|++++.+.|+=..+.
T Consensus        17 ~~~Er~~-i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk~gi~   59 (63)
T 3e7l_A           17 KEFEKIF-IEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIR   59 (63)
T ss_dssp             HHHHHHH-HHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHH-HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf             9999999-999999919989999999895999999999994899


No 88 
>>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ... (A:189-260)
Probab=81.00  E-value=2  Score=22.25  Aligned_cols=23  Identities=48%  Similarity=0.715  Sum_probs=20.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+||+++|..+|.||.+|++.|+
T Consensus        29 ~lt~~~lA~~lg~sr~tvsr~l~   51 (72)
T 3kcc_A           29 KITRQEIGQIVGCSRETVGRILK   51 (72)
T ss_dssp             ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             68999999997998999999999


No 89 
>>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:)
Probab=80.85  E-value=1.2  Score=23.71  Aligned_cols=40  Identities=18%  Similarity=0.178  Sum_probs=29.2

Q ss_pred             CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf             10489999999852101-1104679999743--378778656565
Q gi|254780805|r  135 LNPLEEALGYEQLISEY-GYTQNDIGSIVGK--SRSHVANILRIL  176 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~--s~s~V~~~LrLl  176 (300)
                      |+|.+.+  +-.++.+. ..|+.+||+.+|.  |+++|+.+|+-|
T Consensus        11 ~~ptd~~--ILe~L~~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L   53 (111)
T 3b73_A           11 XTIWDDR--ILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKL   53 (111)
T ss_dssp             CCHHHHH--HHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHH
T ss_pred             CCHHHHH--HHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             4544899--999998737888889886136683388999999999


No 90 
>>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82)
Probab=80.83  E-value=2  Score=22.35  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=26.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +++.+...+..++|+.+|.|+++|+.+|+.|.
T Consensus        32 ~~L~~~~~~~~ela~~l~is~~tvs~HL~~L~   63 (82)
T 2kko_A           32 DLLAQGERAVEAIATATGMNLTTASANLQALK   63 (82)
T ss_dssp             HHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99981997899999998909999999999999


No 91 
>>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79)
Probab=80.78  E-value=2.7  Score=21.51  Aligned_cols=43  Identities=9%  Similarity=0.074  Sum_probs=30.3

Q ss_pred             CCCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             210489999999852-1011-104679999743378778656565
Q gi|254780805|r  134 DLNPLEEALGYEQLI-SEYG-YTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       134 dl~p~e~A~~~~~l~-~~~~-~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .|+..+.-..+-+++ +.-+ +|.++||+.||.|++||.+.|.-|
T Consensus        16 ~m~~~~R~~~Il~~L~~~~~~vt~~eLa~~l~VS~~Ti~rdl~~L   60 (79)
T 1j5y_A           16 KTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYL   60 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             030999999999999986997769999999797999999999999


No 92 
>>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} (A:118-202)
Probab=80.63  E-value=2.1  Score=22.16  Aligned_cols=37  Identities=24%  Similarity=0.448  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             1104679999743378778656565435899998764210167777
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHAR  197 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar  197 (300)
                      .+||++||..+|.|+.+|++.|.         .+-.+|-|...+.+
T Consensus        29 ~lt~~~lA~~lg~sr~tvsr~L~---------~L~~~glI~~~~~~   65 (85)
T 2zcw_A           29 KATHDELAAAVGSVRETVTKVIG---------ELAREGYIRSGYGK   65 (85)
T ss_dssp             ECCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEEETTE
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCCE
T ss_conf             89899999887988999999999---------99988999965999


No 93 
>>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} (A:174-234)
Probab=80.61  E-value=2.3  Score=21.96  Aligned_cols=37  Identities=30%  Similarity=0.392  Sum_probs=26.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|.|....  +++-+ |+|..+||+.+|.|.++|.+++.
T Consensus         1 LT~rE~~vl--~l~~~-G~s~~eIA~~L~is~~TV~~~~~   37 (61)
T 1l3l_A            1 LDPKEATYL--RWIAV-GKTXEEIADVEGVKYNSVRVKLR   37 (61)
T ss_dssp             CCHHHHHHH--HHHTT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             998999999--99975-99999999996989999999999


No 94 
>>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64)
Probab=80.54  E-value=2.6  Score=21.60  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210--11104679999743378778656565
Q gi|254780805|r  135 LNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +..++.|..+-+.+.+  .++|..+||+.+|.+++++.++|.-|
T Consensus         4 ~~s~~r~l~iL~~l~~~~~~~t~~eia~~~glp~st~~Rll~tL   47 (64)
T 1mkm_A            4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL   47 (64)
T ss_dssp             CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             64999999999999728999899999998791999999999999


No 95 
>>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} (A:136-207)
Probab=80.06  E-value=2.3  Score=21.89  Aligned_cols=25  Identities=40%  Similarity=0.594  Sum_probs=21.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1110467999974337877865656
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      +.+|+++||..+|.|+.+|++.|.-
T Consensus        28 ~~~t~~elA~~lg~sr~tvsr~l~~   52 (72)
T 2oz6_A           28 IKITRQEIGRIVGCSREMVGRVLKS   52 (72)
T ss_dssp             EECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             0778999999979999999999999


No 96 
>>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77)
Probab=79.95  E-value=2.1  Score=22.13  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=25.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +++.+...+..++|+.+|.|+++|+..|+.|.
T Consensus        22 ~~L~~~~~~~~ela~~l~is~stvs~HL~~L~   53 (77)
T 2p4w_A           22 FLLTKRPYFVSELSRELGVGQKAVLEHLRILE   53 (77)
T ss_dssp             HHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99981998899999998909999999999999


No 97 
>>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55)
Probab=79.94  E-value=1.6  Score=22.97  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+.+|... +..|.+....+..+||+.+|.|+++|.++++
T Consensus         3 lD~~D~~I-L~~L~~~~r~s~~eia~~lgis~~tv~~ri~   41 (55)
T 2cfx_A            3 LDQIDLNI-IEELKKDSRLSMRELGRKIKLSPPSVTERVR   41 (55)
T ss_dssp             CCHHHHHH-HHHHHHCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             78899999-9999984899999999998858889999999


No 98 
>>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53)
Probab=79.94  E-value=1.8  Score=22.56  Aligned_cols=31  Identities=16%  Similarity=0.128  Sum_probs=24.4

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011104679999743378778656565
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .|.+....+..+||+.+|.|+++|.++++=+
T Consensus        11 ~L~~dar~s~~elA~~lgis~~~v~~Ri~~L   41 (53)
T 3i4p_A           11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKX   41 (53)
T ss_dssp             HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9998589999999999891999999999999


No 99 
>>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58)
Probab=79.81  E-value=1.5  Score=23.17  Aligned_cols=39  Identities=18%  Similarity=0.318  Sum_probs=27.7

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+..|... +..|.+..-.+..++|+.+|.|+++|.++++
T Consensus         7 ld~~D~~I-l~~L~~~~r~s~~ela~~lgis~~tv~~ri~   45 (58)
T 2dbb_A            7 LDRVDMQL-VKILSENSRLTYRELADILNTTRQRIARRID   45 (58)
T ss_dssp             CCHHHHHH-HHHHHHCTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             60999999-9999885999999999998969999999999


No 100
>>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646} (A:1-89)
Probab=79.78  E-value=0.75  Score=25.04  Aligned_cols=42  Identities=14%  Similarity=0.008  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0489999999852101110467999974337877865656543
Q gi|254780805|r  136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      +...-+..++.+....|+||.++|+ .|.|+++|+++.+=..-
T Consensus         2 ~~~~ig~~lk~~R~~~glsq~ela~-~gis~~~is~~E~g~~~   43 (89)
T 2qfc_A            2 QAEKLGSEIKKIRVLRGLTQKQLSE-NICHQSEVSRIESGAVY   43 (89)
T ss_dssp             -CHHHHHHHHHHHHHHTCCTTTTTT-TTSCHHHHHHHHTSSSC
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHH-HCCCHHHHHHHHCCCCC
T ss_conf             8799999999999985999999967-45899999999889999


No 101
>>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} (A:8-76)
Probab=79.67  E-value=1.7  Score=22.69  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=26.9

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             21011104679999743378778656-5654358999987
Q gi|254780805|r  148 ISEYGYTQNDIGSIVGKSRSHVANIL-RILKLPSSVREMI  186 (300)
Q Consensus       148 ~~~~~~t~~~lA~~~G~s~s~V~~~L-rLl~L~~~i~~~l  186 (300)
                      ..+-|+|-++||+.+|+|..||+..+ .-..+|++--+.|
T Consensus        15 K~~kgltw~~iA~~iG~s~v~~aaa~lGQ~~~~~~~A~~l   54 (69)
T 1dw9_A           15 KAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLV   54 (69)
T ss_dssp             HHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             9983999999999969999999999827777999999999


No 102
>>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:)
Probab=79.51  E-value=1.8  Score=22.65  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=25.5

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565654
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.+...+..+||+.+|.|+++|++.|+.|.
T Consensus        29 ~L~~~~~~v~eLa~~l~~s~stvS~HL~~L~   59 (118)
T 2jsc_A           29 ALLDGVCYPGQLAAHLGLTRSNVSNHLSCLR   59 (118)
T ss_dssp             HHHTTCCSTTTHHHHHSSCHHHHHHHHHHHT
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9981994799999998856656999999998


No 103
>>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} (A:)
Probab=79.39  E-value=4.3  Score=20.17  Aligned_cols=39  Identities=23%  Similarity=0.274  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-|.-..  +++-+ |+|..+||..+|.|..+|.++++
T Consensus        28 ~~LT~rE~~vl--~~l~~-G~t~~eIA~~L~is~~TV~~~~~   66 (91)
T 2rnj_A           28 EMLTEREMEIL--LLIAK-GYSNQEIASASHITIKTVKTHVS   66 (91)
T ss_dssp             GGCCSHHHHHH--HHHHT-TCCTTHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             41699999999--99993-89999999897979989999999


No 104
>>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57)
Probab=79.35  E-value=1.8  Score=22.54  Aligned_cols=40  Identities=18%  Similarity=0.312  Sum_probs=27.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+.+|... +..|.+..-.+..++|+.+|.|+++|.++++
T Consensus         4 ~ld~~D~~I-L~~L~~d~r~s~~elA~~lgvS~~tv~~ri~   43 (57)
T 2cyy_A            4 PLDEIDKKI-IKILQNDGKAPLREISKITGLAESTIHERIR   43 (57)
T ss_dssp             CCCHHHHHH-HHHHHHCTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             770999999-9999974899999999998929899999999


No 105
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=79.32  E-value=2.6  Score=21.56  Aligned_cols=44  Identities=16%  Similarity=0.181  Sum_probs=34.8

Q ss_pred             CCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210--11104679999743378778656565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .....++.+..+-+++.+  .+++..+||+.+|.+++++.++|.-|
T Consensus        15 ~~~~s~~r~l~IL~~l~~~~~~~tl~eia~~lg~~~st~~RlL~tL   60 (86)
T 2ia2_A           15 DYVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTL   60 (86)
T ss_dssp             -CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             7216999999999999737999699999999793999999999999


No 106
>>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:1-85)
Probab=79.29  E-value=1.7  Score=22.76  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=25.8

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011104679999743378778656565
Q gi|254780805|r  145 EQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .+++....+|..|||+.+|.|+++|++.|+-|
T Consensus        26 l~lL~~g~~t~~eLa~~~gls~~tv~~~l~~L   57 (85)
T 2hoe_A           26 LKRIXKSPVSRVELAEELGLTKTTVGEIAKIF   57 (85)
T ss_dssp             HHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99998199299999988795999999999999


No 107
>>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} (A:)
Probab=79.28  E-value=2.6  Score=21.57  Aligned_cols=43  Identities=14%  Similarity=0.291  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-74337877865656
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRI  175 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrL  175 (300)
                      ++|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+=
T Consensus        25 ~~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rsQGtlSdLL~~   68 (111)
T 1wh8_A           25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSR   68 (111)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf             52689999999999999858329999999980082789999838


No 108
>>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* (A:152-237)
Probab=78.95  E-value=2  Score=22.26  Aligned_cols=24  Identities=13%  Similarity=0.251  Sum_probs=21.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             111046799997433787786565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.+|+++||..+|.++.+|++.|+
T Consensus        26 ~~~s~~~lA~~lG~sr~tvsr~l~   49 (86)
T 3fx3_A           26 LPYDKXLIAGRLGXKPESLSRAFS   49 (86)
T ss_dssp             CCSCTHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             898999999897998999999999


No 109
>>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60)
Probab=78.79  E-value=1.8  Score=22.57  Aligned_cols=39  Identities=18%  Similarity=0.151  Sum_probs=28.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+++|... +..|.+....+..+||+.+|.|+++|.++++
T Consensus         8 lD~~D~~I-L~~Lq~n~r~s~~elA~~lgis~~tv~~ri~   46 (60)
T 2p5v_A            8 LDKTDIKI-LQVLQENGRLTNVELSERVALSPSPCLRRLK   46 (60)
T ss_dssp             CCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             08999999-9999983699999999998979889999999


No 110
>>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:129-215)
Probab=78.75  E-value=3.2  Score=21.00  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|.|....  +++.. |+|-.+||+.+|.|..+|.++++
T Consensus        25 ~~Lt~~E~~vl--~l~~~-G~s~~eIA~~L~iS~~TV~~~~~   63 (87)
T 1a04_A           25 NQLTPRERDIL--KLIAQ-GLPNKMIARRLDITESTVKVHVK   63 (87)
T ss_dssp             GGSCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHH--HHHHC-CCCCCEEHHHHCCCHHHHHHHHH
T ss_conf             64898999999--99984-99844018986875779999999


No 111
>>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} (A:179-227)
Probab=78.70  E-value=1.3  Score=23.43  Aligned_cols=22  Identities=5%  Similarity=0.119  Sum_probs=19.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1046799997433787786565
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +||+++|..+|.||.+|++.|.
T Consensus         1 ltq~elA~~lG~sr~tvsR~l~   22 (49)
T 3dkw_A            1 VAKQLVAGHLSIQPETFSRIMH   22 (49)
T ss_dssp             SCTHHHHHHTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8899998886998999999999


No 112
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=78.57  E-value=2.6  Score=21.60  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=25.7

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565654
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.....|..+||+.+|.|+++|++.|+.|.
T Consensus        19 ~L~~g~~tv~eLa~~lgis~~tvS~HL~~L~   49 (165)
T 2vxz_A           19 LLADGCKTTSLIQQRLGLSHGRAKALIYVLE   49 (165)
T ss_dssp             HHTTCCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             9975450899999982650899999999998


No 113
>>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* (A:155-225)
Probab=78.56  E-value=2.5  Score=21.70  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+|.|....+  ++-. |+|..++|+.+|.|..+|.++++
T Consensus         5 ~LT~~E~~vl~--~~~~-G~s~~eIA~~l~is~~TV~~~~~   42 (71)
T 3klo_A            5 KLTKREQQIIK--LLGS-GASNIEIADKLFVSENTVKTHLH   42 (71)
T ss_dssp             TSCHHHHHHHH--HHTT-TCCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             43178999999--9974-99799999997989999999999


No 114
>>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} (A:159-230)
Probab=78.48  E-value=1.4  Score=23.39  Aligned_cols=24  Identities=21%  Similarity=0.472  Sum_probs=20.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             111046799997433787786565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.+|+++||..+|.|+.+|++.|+
T Consensus        28 ~~~t~~~lA~~lG~sr~tvsr~l~   51 (72)
T 3iwz_A           28 LRVSRQELARLVGCSREMAGRVLK   51 (72)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             177999999897988999999999


No 115
>>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120)
Probab=78.36  E-value=3.5  Score=20.75  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+.-+.+.-+.|+.+||+.+|.++++|++.++
T Consensus         4 q~~iL~~l~~~~~~t~~eia~~l~~~~~~vs~~i~   38 (91)
T 3g3z_A            4 LFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK   38 (91)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999986994999999998978989999999


No 116
>>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94)
Probab=78.28  E-value=3.7  Score=20.61  Aligned_cols=35  Identities=11%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+..+.+.-+.|+.+||+.+|.|++++++.++
T Consensus         7 ~~~vL~~l~~~~~~t~~~la~~~~~s~~~~s~~i~   41 (66)
T 2a61_A            7 QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVK   41 (66)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf             99999999876998999999882989889999999


No 117
>>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:)
Probab=78.18  E-value=3.6  Score=20.64  Aligned_cols=42  Identities=24%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             CCHHHHH--HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999--9999852101-1104679999743378778656565
Q gi|254780805|r  135 LNPLEEA--LGYEQLISEY-GYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       135 l~p~e~A--~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      |+|.++.  ..+..+.++. ..++.+||+.+|.++++|++.++-|
T Consensus         2 Lt~~~e~yL~~I~~l~~~~~~v~~~diA~~l~Vs~~sV~~~i~~L   46 (142)
T 1on2_A            2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL   46 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             896099999999999963899769999999698878999999999


No 118
>>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} (C:148-250)
Probab=78.13  E-value=2.7  Score=21.48  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=26.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             1104679999743378778656565435899998764210167
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG  194 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g  194 (300)
                      -+|+++||..+|.|+.+|++.|         +++-.+|-|..+
T Consensus        30 ~lt~~~LA~~lG~sr~tvsr~l---------~~L~~~giI~~~   63 (103)
T 3e6c_C           30 PLSQKSIGEITGVHHVTVSRVL---------ASLKRENILDKK   63 (103)
T ss_dssp             CCCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEEEC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEEC
T ss_conf             8689999989799899999999---------999988989964


No 119
>>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* (A:148-227)
Probab=77.85  E-value=1.7  Score=22.69  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=26.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             111046799997433787786565654358999987642101677
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGH  195 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh  195 (300)
                      +.+|+++||..+|.|+.+|++.|+         .+-.+|-|....
T Consensus        29 ~~~t~~~la~~lg~sr~tvsr~L~---------~l~~~glI~~~~   64 (80)
T 3d0s_A           29 HDLTQEEIAQLVGASRETVNKALA---------DFAHRGWIRLEG   64 (80)
T ss_dssp             CCCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSEEEET
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECC
T ss_conf             478999999997999999999999---------999889899639


No 120
>>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99)
Probab=77.82  E-value=3.5  Score=20.76  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+...+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus         5 ~~~~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~i~   40 (65)
T 2nnn_A            5 TQWAALVRLGETGPCPQNQLGRLTAXDAATIKGVVE   40 (65)
T ss_dssp             HHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999999987993999999987878531428999


No 121
>>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83)
Probab=77.75  E-value=3  Score=21.22  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=26.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..| .+...+..+||+.+|.|+++|+..|+.|.
T Consensus        17 L~~L-~~~~~~~~eia~~l~is~~tvS~HL~~L~   49 (74)
T 1uly_A           17 LKLL-RNKEXTISQLSEILGKTPQTIYHHIEKLK   49 (74)
T ss_dssp             HHHH-TTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999-82996899999998909999999999998


No 122
>>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69)
Probab=77.58  E-value=3.1  Score=21.05  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=24.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011104679999743378778656565
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .+.++ |++..++|++||.|+++|.+.+..-
T Consensus        12 ~~~~~-G~s~~~aA~~f~VS~~tv~k~~~r~   41 (53)
T 1pdn_C           12 EMAAD-GIRPCVISRQLRVSHGCVSKILNRY   41 (53)
T ss_dssp             HHHHT-TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99986-9999999998896899999999998


No 123
>>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79)
Probab=77.55  E-value=2.4  Score=21.82  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=26.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..|.+ ...+..+||+.+|.|+++|+..|+.|.
T Consensus        27 l~~L~~-~~~~~~ela~~l~is~~tvS~HL~~L~   59 (79)
T 2oqg_A           27 LTELGR-ADQSASSLATRLPVSRQAIAKHLNALQ   59 (79)
T ss_dssp             HHHHHH-SCBCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             HHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999964-998744779886899889999998999


No 124
>>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106)
Probab=77.51  E-value=3.9  Score=20.48  Aligned_cols=35  Identities=9%  Similarity=0.054  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+.-+...-+.|+.+||+.+|.+++++++.++
T Consensus         5 q~~vL~~l~~~~~~t~~ela~~~~~~~~t~s~~i~   39 (64)
T 2nyx_A            5 QFRTLVILSNHGPINLATLATLLGVQPSATGRXVD   39 (64)
T ss_dssp             HHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999857997999999998887877799997


No 125
>>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:)
Probab=76.97  E-value=3.1  Score=21.07  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..|. +...+..+||+.+|.|+++|+..|+.|.
T Consensus        32 l~~L~-~~~~~~~ela~~l~is~stvs~HL~~L~   64 (106)
T 1r1u_A           32 MELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK   64 (106)
T ss_dssp             HHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99998-3994699999887658668999999999


No 126
>>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} (A:)
Probab=76.80  E-value=3.5  Score=20.77  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      +.++..|.|..++..+..++++|.--|+. +|+|+.+++.+|+
T Consensus        15 ~~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rSQGtlSdLL~   57 (101)
T 1wh6_A           15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS   57 (101)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf             1048999999999999994975999999998518278999984


No 127
>>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} (A:)
Probab=76.73  E-value=4.2  Score=20.24  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHCC-CCHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf             4899999998521011-10467999974-----33787786565654
Q gi|254780805|r  137 PLEEALGYEQLISEYG-YTQNDIGSIVG-----KSRSHVANILRILK  177 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~-~t~~~lA~~~G-----~s~s~V~~~LrLl~  177 (300)
                      .-+.-..+..++.+.+ .||++|++.+.     .|.+||++-|+-+.
T Consensus         3 k~~R~~~I~~li~~~~i~sq~eL~~~L~~~G~~vtqaTisRDL~eL~   49 (64)
T 2p5k_A            3 KGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH   49 (64)
T ss_dssp             HHHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC
T ss_conf             89999999999983898889999999998598663899987899919


No 128
>>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=76.65  E-value=3.5  Score=20.74  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      +.|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+
T Consensus        15 ~~ldT~~I~~~v~~eL~~~~I~Q~~Fa~~vL~rSQGtlSdLL~   57 (101)
T 1x2l_A           15 EQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA   57 (101)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf             5358999999999999994987999999998108178999983


No 129
>>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:66-117)
Probab=76.37  E-value=2.6  Score=21.62  Aligned_cols=32  Identities=28%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             HHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210-1110467999974337877865656
Q gi|254780805|r  144 YEQLISE-YGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       144 ~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      ++.++++ --.|..+||+.++.|.++|.++|+=
T Consensus        12 Lkalie~D~~~TtreiA~~Lnvs~~TI~~hLk~   44 (52)
T 3hot_A           12 LQALLDEDDAQTQKQLAEQLEVSQQAVSNRLRE   44 (52)
T ss_dssp             HHHHHHHCSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999664001899998856488899999997


No 130
>>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54)
Probab=76.34  E-value=2.7  Score=21.45  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|.+....+..+||+.+|.|+++|.++++
T Consensus        12 ~L~~n~r~s~~~la~~lgiS~~tv~~ri~   40 (54)
T 1i1g_A           12 ILEKDARTPFTEIAKKLGISETAVRKRVK   40 (54)
T ss_dssp             HHHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99985898999999998909999999999


No 131
>>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} (A:)
Probab=76.21  E-value=3.5  Score=20.76  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=29.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+|-|.-..  +++-+ |+|..+||+.+|.|..+|.++++
T Consensus        34 ~Lt~rE~evl--~ll~~-G~t~~eIA~~L~iS~~TV~~~~~   71 (99)
T 1p4w_A           34 RLSPKESEVL--RLFAE-GFLVTEIAKKLNRSIKTISSQKK   71 (99)
T ss_dssp             SCCHHHHHHH--HHHHH-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8799999999--99992-89999999897969999999999


No 132
>>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170)
Probab=76.18  E-value=2.6  Score=21.60  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=24.9

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011104679999743378778656
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|..-+...|+|+++.|+.+|.||..|+-|-
T Consensus         5 ~F~~W~~r~gLsl~~AAeALGisrRmi~YY~   35 (81)
T 2auw_A            5 XFGDWXHRNNLSLTTAAEALGISRRXVSYYR   35 (81)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999999859999999999499999999997


No 133
>>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125)
Probab=75.96  E-value=4.4  Score=20.12  Aligned_cols=43  Identities=12%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999998521011104679999743378778656565435899998764210
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      ++..+..+.+..+.|+.+||+.+|.++++|++.+         ..+...|-|
T Consensus         7 ~~~iL~~l~~~g~~t~~ela~~~~~~~~~vs~~i---------~~L~~~g~i   49 (78)
T 3cjn_A            7 KXRALAILSAKDGLPIGTLGIFAVVEQSTLSRAL---------DGLQADGLV   49 (78)
T ss_dssp             HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHH---------HHHHHHHHH
T ss_conf             9999999984799899999999788833245889---------999998854


No 134
>>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131)
Probab=75.67  E-value=2.5  Score=21.72  Aligned_cols=32  Identities=31%  Similarity=0.406  Sum_probs=25.7

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +++.+...+..+||+.+|.|+++|+..|+.|.
T Consensus        65 ~~L~~~~~~~~eLa~~l~is~~tvS~HL~~L~   96 (131)
T 3f6v_A           65 QLLTSGEQTVNNLAAHFPASRSAISQHLRVLT   96 (131)
T ss_dssp             HHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99982991799999998878778999875498


No 135
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=75.65  E-value=4.6  Score=20.01  Aligned_cols=45  Identities=22%  Similarity=0.263  Sum_probs=35.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02210489999999852101--1104679999743378778656565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEY--GYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~--~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +.....++.+..+-+.+.+.  ++|..+||+.+|.++++|.++|.-|
T Consensus         7 ~~~~~s~~r~l~iL~~l~~~~~~~t~~eia~~~glp~stv~Rll~tL   53 (75)
T 2g7u_A            7 RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTL   53 (75)
T ss_dssp             CCCCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             76136999999999999737999899999999791999999999999


No 136
>>1b4a_A Arginine repressor; helix turn helix; 2.50A {Bacillus stearothermophilus} (A:1-68)
Probab=75.57  E-value=3.4  Score=20.85  Aligned_cols=39  Identities=10%  Similarity=0.213  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHCC-CCHHHHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf             99999998521011-10467999974-----33787786565654
Q gi|254780805|r  139 EEALGYEQLISEYG-YTQNDIGSIVG-----KSRSHVANILRILK  177 (300)
Q Consensus       139 e~A~~~~~l~~~~~-~t~~~lA~~~G-----~s~s~V~~~LrLl~  177 (300)
                      +.-..+..++.+.+ .||++|++.+.     .|.+||++-|.-|.
T Consensus         5 ~R~~~I~~ll~~~~~~tq~eL~~~L~~~G~~vSqaTisRDL~eL~   49 (68)
T 1b4a_A            5 QRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQ   49 (68)
T ss_dssp             HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf             999999999985897789999999998597523899999999815


No 137
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:1-46)
Probab=75.51  E-value=2.6  Score=21.61  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             110467999974337877865656-543589999876
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR  187 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~  187 (300)
                      ..|..++|+..|.|.++|++.|.= -..+++..+.|.
T Consensus         2 k~ti~dIA~~agvS~~TVSr~ln~~~~vs~~tr~~I~   38 (46)
T 2hsg_A            2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVL   38 (46)
T ss_dssp             CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             8689999999896999999997895999999999999


No 138
>>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:336-423)
Probab=75.44  E-value=2.6  Score=21.63  Aligned_cols=54  Identities=15%  Similarity=0.162  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985-21-011104679999743378778656565435899998764
Q gi|254780805|r  133 KDLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRK  188 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~  188 (300)
                      ..|+|-+...-.-+. +. -.|+|.++||..+|.|.++|..++.  ..-..+++.+..
T Consensus        24 ~~L~~~~r~vi~lr~~~~~~e~~s~~eIA~~lgis~~tV~~~~~--ra~~~Lr~~l~~   79 (88)
T 2a6h_F           24 SKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIEN--KALRKLKYHESR   79 (88)
T ss_dssp             HSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHH--HHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH--HHHHHHHHCHHH
T ss_conf             45999999999970667899860399999998969999999999--999998877776


No 139
>>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* (A:137-220)
Probab=75.36  E-value=2.2  Score=22.01  Aligned_cols=26  Identities=23%  Similarity=0.485  Sum_probs=21.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11104679999743378778656565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +.+|+.++|..+|.|+.+|++.|.-+
T Consensus        30 ~~~t~~eLA~~lg~sr~tvsr~l~~l   55 (84)
T 2fmy_A           30 LGLNTEEIALMLGTTRQTVSVLLNDF   55 (84)
T ss_dssp             CSSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             23169999999799899999999999


No 140
>>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:)
Probab=75.36  E-value=2.9  Score=21.25  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565654
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +.-+|... +...++.+| ...+.|+.+|.|++++.+.|+=..
T Consensus        18 ~~~~Er~~-I~~aL~~~g-n~~~aA~~Lgisr~tL~rklkk~g   58 (61)
T 1g2h_A           18 IGFYEAQV-LKLFYAEYP-STRKLAQRLGVSHTAIANKLKQYG   58 (61)
T ss_dssp             CSHHHHHH-HHHHHHHSC-SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred             HHHHHHHH-HHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99999999-999840387-389999995861899998999846


No 141
>>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} (I:1-94)
Probab=75.35  E-value=3.7  Score=20.62  Aligned_cols=41  Identities=20%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             CCHHHH-HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHH
Q ss_conf             104899-999998521011104679999743------37877865656
Q gi|254780805|r  135 LNPLEE-ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILRI  175 (300)
Q Consensus       135 l~p~e~-A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~LrL  175 (300)
                      |.-+|+ |..|+.-.=..|+||.+++..+|.      |+++|++.-+|
T Consensus         3 l~ele~Fa~~fK~rRi~LG~TQ~dVG~ALg~l~G~~fSQTtIcRFEaL   50 (94)
T 3d1n_I            3 XEEIREFAKNFKIRRLSLGLTQTQVGQAXTATEGPAYSQSAISRFEKL   50 (94)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             899999999999999984676968999997337763563546559988


No 142
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91)
Probab=74.97  E-value=3  Score=21.21  Aligned_cols=40  Identities=10%  Similarity=0.047  Sum_probs=28.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++++. ++..+..+.+.-++|+.+||+.+|.++++|++.+.
T Consensus        10 ~l~~~-~~~iL~~i~~~~~~t~~ela~~l~i~~~~vs~~i~   49 (91)
T 3cta_A           10 YRAIK-KIKEAAEASNRAYLTSSKLADMLGISQQSASRIII   49 (91)
T ss_dssp             HHHHH-HHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999-99985640479983899999998878879999999


No 143
>>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102)
Probab=74.91  E-value=5  Score=19.78  Aligned_cols=35  Identities=14%  Similarity=0.105  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+..+.+.-++++.+||+.+|.++++|++.+.
T Consensus         4 q~~iL~~l~~~~~~~~~~la~~~~~~~stvs~~i~   38 (73)
T 3bdd_A            4 RYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLK   38 (73)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999986998999999998715758999999


No 144
>>3ere_D Arginine repressor; X-RAY crystallography, arginine repressor protein; 2.50A {Mycobacterium tuberculosis H37RV} PDB: 3fhz_A* (D:1-87)
Probab=74.79  E-value=3.6  Score=20.64  Aligned_cols=45  Identities=13%  Similarity=0.157  Sum_probs=34.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCC-CCHHHHHHHH-----HHHHHHHHHHHHHHH
Q ss_conf             22104899999998521011-1046799997-----433787786565654
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYG-YTQNDIGSIV-----GKSRSHVANILRILK  177 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~-----G~s~s~V~~~LrLl~  177 (300)
                      ..++..+.-..+..++...+ .|+++|++.+     +.|.+||++-|.-|.
T Consensus        14 ~~m~k~~R~~~I~~~l~~~~~~t~~eL~~~L~~~gf~VSq~TIrRDL~~L~   64 (87)
T 3ere_D           14 VAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELG   64 (87)
T ss_dssp             -CCCHHHHHHHHHHHHHTCCCCSHHHHHHHHHHTTCCCCHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             786899999999999985897899999999997497611788887999809


No 145
>>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:144-208)
Probab=74.55  E-value=3.8  Score=20.54  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=23.3

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+ |+|..+||+.+|.|..+|.++++
T Consensus         9 ~l~~~-G~t~~eIA~~l~iS~~TV~~~~~   36 (65)
T 1yio_A            9 QLTIR-GLMNKQIAGELGIAEVTVKVHRH   36 (65)
T ss_dssp             HHHTT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHC-CCCHHHHHHHCCCCHHHHHHHHH
T ss_conf             99981-66299999981886899999999


No 146
>>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:147-220)
Probab=74.21  E-value=3.9  Score=20.41  Aligned_cols=38  Identities=18%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             11104679999743378778656565435899998764210167777
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHAR  197 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar  197 (300)
                      +.+|++++|..+|.++.+|++.|         +++-.+|-|.....+
T Consensus        22 i~~t~~~lA~~lg~sr~tvsr~L---------~~l~~~g~I~~~~~~   59 (74)
T 3dv8_A           22 LKITHETIANHLGSHREVITRXL---------RYFQVEGLVKLSRGK   59 (74)
T ss_dssp             ECCCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEEEETTE
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEECCCE
T ss_conf             66449999999798999999999---------999988989962999


No 147
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138)
Probab=74.17  E-value=2.6  Score=21.63  Aligned_cols=29  Identities=17%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             HHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210-111046799997433787786565
Q gi|254780805|r  146 QLISE-YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++.. .+.|+.+||+.+|.|+++|++.+.
T Consensus        13 ~~~~~~~~~t~~~lA~~lgis~~tvt~~l~   42 (138)
T 3hrs_A           13 ELGTRHNKITNKEIAQLMQVSPPAVTEMMK   42 (138)
T ss_dssp             HTTSSCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             998349987599999997899289999999


No 148
>>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A (A:103-184)
Probab=74.07  E-value=0.7  Score=25.22  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-+......+..  .|+|..+||+.+|.|.++|.+++.
T Consensus        32 ~~L~~~~r~v~~l~~~--~g~s~~eIA~~lgis~~~v~~~l~   71 (82)
T 2q1z_A           32 ARLPEAQRALIERAFF--GDLTHRELAAETGLPLGTIKSRIR   71 (82)
T ss_dssp             HTSCHHHHHHHHHHHH--SCCSSCCSTTTCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8746899889999999--198999999998939999999999


No 149
>>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125)
Probab=74.02  E-value=4.8  Score=19.86  Aligned_cols=35  Identities=14%  Similarity=-0.056  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +...+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus         6 q~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~   40 (81)
T 2fxa_A            6 EHHILWIAYQLNGASISEIAKFGVXHVSTAFNFSK   40 (81)
T ss_dssp             HHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             99999999976995899999998457553779999


No 150
>>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus} (A:111-195)
Probab=74.02  E-value=1.8  Score=22.63  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=26.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             11104679999743378778656565435899998764210167
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG  194 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g  194 (300)
                      +.+|+++||..+|.|+.+|++.|+         .+-.+|-|...
T Consensus        28 ~~~t~~~lA~~~g~sr~tvsr~L~---------~l~~~giI~~~   62 (85)
T 2zdb_A           28 VTVSHEEIADATASIRESVSKVLA---------DLRREGLIATA   62 (85)
T ss_dssp             EECCHHHHHHTTTSCHHHHHHHHH---------HHHHHTSEEEE
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEE
T ss_conf             388899999887997999999999---------99988989970


No 151
>>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} (A:133-222)
Probab=73.81  E-value=2.4  Score=21.81  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=25.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             111046799997433787786565654358999987642101
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS  192 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is  192 (300)
                      +.+|+++||..+|.|+.+|++.|.         ++-.+|-|.
T Consensus        30 ~~lt~~~lA~~lg~sr~tvsr~l~---------~l~~~g~I~   62 (90)
T 1ft9_A           30 VDFTVEEIANLIGSSRQTTSTALN---------SLIKEGYIS   62 (90)
T ss_dssp             ECCCHHHHHHHHCSCHHHHHHHHH---------HHHHTTSSE
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE
T ss_conf             428899999984998999999999---------999889899


No 152
>>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A (A:)
Probab=73.26  E-value=6.2  Score=19.17  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             897899999999997398799971798228999858989999999983756
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      .+..+.+++.+....||-...+...++  .+.|...+.+||++-++.|..+
T Consensus        22 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAiellDrs   70 (94)
T 2jrh_A           22 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS   70 (94)
T ss_dssp             SSCCHHHHHHHHHHHHCSSEEEEEECS--SCEEECCSHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf             984399999999998598454677567--1788525677889999987169


No 153
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:1-60)
Probab=73.07  E-value=3.7  Score=20.62  Aligned_cols=36  Identities=28%  Similarity=0.271  Sum_probs=26.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             110467999974337877865656-543589999876
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR  187 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~  187 (300)
                      ..|..+||+..|.|.++||+.|.= -.++++..+.|.
T Consensus         9 ~~tl~diA~~aGvS~sTVSr~ln~~~~vs~~tr~rV~   45 (60)
T 3h5t_A            9 YGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRIL   45 (60)
T ss_dssp             TTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             7629999999884999999985898999999999999


No 154
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=73.02  E-value=4.5  Score=20.07  Aligned_cols=46  Identities=4%  Similarity=0.090  Sum_probs=35.7

Q ss_pred             HCCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210--11104679999743378778656565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .+.-...++.+..+-+++.+  .+++..+||+.+|.++++|.++|.-|
T Consensus        15 ~~~~~~s~~r~l~iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~tL   62 (95)
T 2o0y_A           15 ADAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATX   62 (95)
T ss_dssp             ---CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             787751999999999999747999899999999792989999999999


No 155
>>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} (A:)
Probab=72.62  E-value=3.2  Score=20.96  Aligned_cols=42  Identities=14%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      +.|+..|.|..++..+..++++|.--|+. +|+|+.+++.+|+
T Consensus        19 ~~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rSQGtlSdLL~   61 (141)
T 1yse_A           19 NTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILR   61 (141)
T ss_dssp             CCSCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             7320799999999999984877999999998208588999996


No 156
>>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} (B:)
Probab=72.58  E-value=6.5  Score=19.01  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             897899999999997398799971798228999858989999999983756
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      .+..+.+++.+....||....+...++  .+.|...+.+||++-++.|..+
T Consensus        38 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAiellDrs   86 (100)
T 2npt_B           38 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS   86 (100)
T ss_dssp             SSCCHHHHHHHHHHHHTSCEEEEEEET--TEEEECCCHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf             874399999999998598354677467--3788625677789999987059


No 157
>>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109)
Probab=72.56  E-value=5.5  Score=19.49  Aligned_cols=36  Identities=8%  Similarity=0.006  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++..+..+.+.-++|+.+||+.+|.++++|++.+.
T Consensus         3 ~q~~iL~~l~~~~~~t~~~l~~~~~~~~~~vs~~i~   38 (75)
T 2fbi_A            3 QQWRVIRILRQQGEMESYQLANQACILRPSMTGVLA   38 (75)
T ss_dssp             HHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999999986998999999998867888999999


No 158
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=72.56  E-value=6.5  Score=19.01  Aligned_cols=47  Identities=26%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65431022104899999998521011-1046799997433787786565
Q gi|254780805|r  127 VENVQRKDLNPLEEALGYEQLISEYG-YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       127 ~EN~~R~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+.+...++++.+-.. +..+...-| .|+.+||+.+|.++++|++.+.
T Consensus        16 ~~~l~~~gls~~q~~v-L~~l~~~~g~~t~~~La~~~~~~~~~vs~~i~   63 (88)
T 1ku9_A           16 SELAKIHGLNKSVGAV-YAILYLSDKPLTISDIXEELKISKGNVSXSLK   63 (88)
T ss_dssp             HHHHHHTTCCHHHHHH-HHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHH-HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999981979999999-99999769896999999784866514999999


No 159
>>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:)
Probab=71.97  E-value=2.4  Score=21.81  Aligned_cols=32  Identities=9%  Similarity=0.058  Sum_probs=25.8

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .++.+...+..+||+.+|.|+++|+++|+.|.
T Consensus        25 ~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~   56 (118)
T 3f6o_A           25 GRLSRGPATVSELAKPFDMALPSFMKHIHFLE   56 (118)
T ss_dssp             HHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99980997777779886969999999998899


No 160
>>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} (A:)
Probab=71.56  E-value=6.9  Score=18.86  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             897899999999997398799971798228999858989999999983756
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      ....+.+++.+....||-...+...++  .+.|...+.+||++-++.|..+
T Consensus        26 RPvk~~dl~~Kv~~afGq~ldl~y~nn--EL~IPl~~Q~DLDkAielLDrS   74 (103)
T 2cu1_A           26 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS   74 (103)
T ss_dssp             SSCCHHHHHHHHHHHHSSCEEEEECSS--SSCEECCSHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf             874399999999998588253566467--2788625677889999987059


No 161
>>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} (A:)
Probab=71.50  E-value=6.9  Score=18.86  Aligned_cols=39  Identities=23%  Similarity=0.125  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-|.....  ++-. |+|..++|..+|.|..+|.++++
T Consensus        10 ~~LT~rE~~vl~--~~~~-G~s~~eIA~~l~is~~TV~~~~~   48 (74)
T 1fse_A           10 PLLTKREREVFE--LLVQ-DKTTKEIASELFISEKTVRNHIS   48 (74)
T ss_dssp             CCCCHHHHHHHH--HHTT-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             987999999999--9992-79999999996898779999999


No 162
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:1-45)
Probab=71.41  E-value=2.6  Score=21.57  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             0467999974337877865656-543589999876
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR  187 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~  187 (300)
                      |-.++|+..|.|+++|++.|.= -..+++.++.|.
T Consensus         2 Ti~diA~~agvS~~TVSr~ln~~~~Vs~~tr~rV~   36 (45)
T 1qpz_A            2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVW   36 (45)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             68999999895999999996897999999999999


No 163
>>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} (A:)
Probab=71.39  E-value=5.7  Score=19.37  Aligned_cols=49  Identities=18%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             897899999999997398799971798228999858989999999983756
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      .+..+.+++.+....||-...+...++  .+.|...+.+||++-++.|..+
T Consensus        49 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAiellDrs   97 (111)
T 2c60_A           49 RPVKYEDVEHKVTTVFGQPLDLHYXNN--ELSILLKNQDDLDKAIDILDRS   97 (111)
T ss_dssp             SSCCHHHHHHHHHHHHSSCCEEEEECS--SCEEECCSHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf             884399999999998598454677567--1788525677889999987069


No 164
>>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125)
Probab=71.12  E-value=6.3  Score=19.09  Aligned_cols=45  Identities=22%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3102210489999999852101110467999974337877865656
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      ....+|++.+-. .+..+...-+.|+.+||+.+|.++++|++.+.-
T Consensus        33 ~~~~~lt~~q~~-iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~   77 (125)
T 3bj6_A           33 TLREGVTVGQRA-ILEGLSLTPGATAPQLGAALQXKRQYISRILQE   77 (125)
T ss_dssp             HHHTTCCHHHHH-HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             867698999999-999999869989999999988657589999999


No 165
>>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} (A:120-231)
Probab=71.03  E-value=4.9  Score=19.82  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=26.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             1104679999743378778656565435899998764210167777
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHAR  197 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar  197 (300)
                      .+|++++|..+|.++.+|++.|+         ++-.+|.|+..+.+
T Consensus        56 ~lt~~~lA~~~g~sr~tvsr~l~---------~L~~~G~I~~~~~~   92 (112)
T 3e97_A           56 PLGTQDIXARTSSSRETVSRVLK---------RLEAHNILEVSPRS   92 (112)
T ss_dssp             CCCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEECSSC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCCE
T ss_conf             55799999996999999999999---------99978989972999


No 166
>>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} (B:)
Probab=70.99  E-value=5.6  Score=19.41  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985-21-011104679999743378778656
Q gi|254780805|r  133 KDLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..|+|-|...-..+. ++ .-.+|++++|+.+|.|+..|++.-
T Consensus         4 ~~L~erEr~Ii~lrfGl~~~~~~tl~eia~~lgiS~erVrqie   46 (68)
T 2p7v_B            4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE   46 (68)
T ss_dssp             CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             0399999999999838889997889999999897899999999


No 167
>>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} (A:152-232)
Probab=70.77  E-value=3  Score=21.14  Aligned_cols=36  Identities=8%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             111046799997433787786565654358999987642101677
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGH  195 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh  195 (300)
                      +.+|+++||..+|.++.+|++.|         +++-.+|-|...+
T Consensus        28 ~~lt~~~lA~~lG~sr~tvsr~L---------~~l~~~g~I~~~~   63 (81)
T 2gau_A           28 IYLSREELATLSNMTVSNAIRTL---------STFVSERMLALDG   63 (81)
T ss_dssp             CCCCHHHHHHHTTSCHHHHHHHH---------HHHHHTTSEEEET
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEECC
T ss_conf             28789999989799999999999---------9999889699709


No 168
>>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A (A:)
Probab=70.37  E-value=6.5  Score=19.02  Aligned_cols=39  Identities=28%  Similarity=0.306  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|++-|.-..  +++-. |+|..+||+.+|.|..+|.++++
T Consensus        26 ~~LT~rE~~vl--~ll~~-G~s~~eIA~~L~iS~~TV~~~~~   64 (95)
T 3c57_A           26 SGLTDQERTLL--GLLSE-GLTNKQIADRMFLAEKTVKNYVS   64 (95)
T ss_dssp             -CCCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             40599999999--99991-79879984885668889999999


No 169
>>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:)
Probab=70.36  E-value=3.9  Score=20.42  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|..++|+.+|.|..+|.++++
T Consensus        13 G~s~~eIA~~l~iS~~TV~~~~~   35 (61)
T 2jpc_A           13 GYTNHGISEKLHISIKTVETHRM   35 (61)
T ss_dssp             SCCSHHHHHHTCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             79999999896988999999999


No 170
>>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=70.35  E-value=3.9  Score=20.41  Aligned_cols=44  Identities=9%  Similarity=0.040  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-743378778656565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRIL  176 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl  176 (300)
                      +.|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+=-
T Consensus        15 ~~ldT~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~~P   59 (101)
T 1wiz_A           15 SVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKE   59 (101)
T ss_dssp             SCCCCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             023289999999999999498799999999753808899998589


No 171
>>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (F:504-613)
Probab=70.25  E-value=1.6  Score=23.00  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210--111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|+|-++.....++...  -|+|..+||..+|.|+++|++++.
T Consensus        46 ~~L~~~~r~ii~l~~~~~~~e~~t~~eIA~~lgis~~~V~~~~~   89 (110)
T 3iyd_F           46 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA   89 (110)
T ss_dssp             TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             48999999999998189999982499999997959999999999


No 172
>>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} (A:)
Probab=70.21  E-value=5.4  Score=19.55  Aligned_cols=38  Identities=16%  Similarity=0.061  Sum_probs=27.9

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|++-|.-...  ++-+ |+|..+||+.+|.|..+|.++++
T Consensus        16 ~Lt~~E~~vl~--~~~~-G~s~~eIA~~L~is~~TV~~~~~   53 (79)
T 1x3u_A           16 TLSERERQVLS--AVVA-GLPNKSIAYDLDISPRTVEVHRA   53 (79)
T ss_dssp             HHCHHHHHHHH--HHTT-TCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHH--HHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             39999999999--9993-69999998898978999999999


No 173
>>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} (A:1-46)
Probab=70.18  E-value=0.53  Score=26.04  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.9

Q ss_pred             HCCCCHHHHHHHHHHHHHHHH
Q ss_conf             011104679999743378778
Q gi|254780805|r  150 EYGYTQNDIGSIVGKSRSHVA  170 (300)
Q Consensus       150 ~~~~t~~~lA~~~G~s~s~V~  170 (300)
                      +.|+||++||+.+|-||+.|+
T Consensus         3 ~~GltQ~eIA~~LgTSRANis   23 (46)
T 1nr3_A            3 ERGWSQKKIARELKTTRQNVS   23 (46)
T ss_dssp             CCSCSSCSTHHHHHHCCSSSC
T ss_pred             CCCCCHHHHHHHHCCCHHHHH
T ss_conf             256779999999776588999


No 174
>>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A (A:24-107)
Probab=69.90  E-value=6.9  Score=18.86  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=24.8

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +++.+ |.|+.+|++.+|.|-+||++-=+-|+
T Consensus        30 ~~L~~-g~syreI~~~tGaS~ATIsRvsr~L~   60 (84)
T 3frw_A           30 KXLTD-KRTYLDISEKTGASTATISRVNRSLN   60 (84)
T ss_dssp             HHHHT-TCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99886-99999999996987575899999987


No 175
>>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146)
Probab=69.82  E-value=5.2  Score=19.63  Aligned_cols=33  Identities=12%  Similarity=0.059  Sum_probs=24.3

Q ss_pred             HHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521-011104679999743378778656565
Q gi|254780805|r  144 YEQLIS-EYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       144 ~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +..+.. ....+..+||+++|.|+++|++.++-|
T Consensus        15 i~~l~~~~~~v~~~elA~~l~vs~~svt~~i~rL   48 (146)
T 2qq9_A           15 IYELEEEGVTPLRARIAERLEQSGPTVSQTVARM   48 (146)
T ss_dssp             HHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999865997619999999789927999999999


No 176
>>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122)
Probab=69.72  E-value=7  Score=18.83  Aligned_cols=51  Identities=14%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1022104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      ...+|++.+-. .+..+....+.|+.+||+.+|.+++++++.+         ..++..|-+
T Consensus        31 ~~~~ls~~q~~-iL~~i~~~~~~t~~ela~~~~i~~~~vsr~v---------~~L~~~g~v   81 (122)
T 1s3j_A           31 EKQGVTPAQLF-VLASLKKHGSLKVSEIAERXEVKPSAVTLXA---------DRLEQKNLI   81 (122)
T ss_dssp             HHTTCCHHHHH-HHHHHHHHSEEEHHHHHHHHTSCHHHHHHHH---------HHHHHTTSE
T ss_pred             HHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHHHHH
T ss_conf             78598999999-9999998699799999999896998999999---------999862425


No 177
>>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:1-82,A:382-406)
Probab=69.26  E-value=6.6  Score=18.97  Aligned_cols=38  Identities=8%  Similarity=0.102  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             48999999985210111046799997433787786565
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..-+...++-+......|..+||+.+|.|+++|++.+.
T Consensus        15 ~~N~~~IL~lL~~~g~~Sr~eLA~~lgLS~~TVs~iv~   52 (107)
T 1z6r_A           15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH   52 (107)
T ss_dssp             HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999999985991899999887959999999999


No 178
>>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:)
Probab=69.24  E-value=5.7  Score=19.41  Aligned_cols=42  Identities=26%  Similarity=0.278  Sum_probs=27.8

Q ss_pred             CCCCHHHHH--HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999--9999852101-11046799997433787786565
Q gi|254780805|r  133 KDLNPLEEA--LGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A--~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++..+.  ..+..+.++. ..++.+||+.+|.|+++|++.++
T Consensus        32 ~~lt~~~~~~L~~I~~l~~~~~~v~~~dlA~~l~vs~~tv~~~l~   76 (155)
T 2h09_A           32 AHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLK   76 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             316457999999999998227977399999885988578999999


No 179
>>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} (A:1-55)
Probab=69.23  E-value=2.3  Score=21.89  Aligned_cols=31  Identities=10%  Similarity=0.132  Sum_probs=24.1

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011104679999743378778656565
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      .|.+....|..+||+.+|.|+++|.++++=|
T Consensus        13 ~L~~~~r~s~~ela~~lgis~~tv~~ri~~L   43 (55)
T 2cg4_A           13 ALMGNARTAYAELAKQFGVSPETIHVRVEKM   43 (55)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999998589999999999887758999999


No 180
>>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141)
Probab=69.09  E-value=5.3  Score=19.60  Aligned_cols=41  Identities=15%  Similarity=0.083  Sum_probs=27.4

Q ss_pred             CCCHHHHHH--HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             210489999--9998521-0111046799997433787786565
Q gi|254780805|r  134 DLNPLEEAL--GYEQLIS-EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~--~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +|++-+.-.  .+..+.+ ..+.++.+||+++|.|+++|++.+.
T Consensus         3 ~Lt~~q~~~L~~I~~l~~~~~~v~~~eLA~~l~vs~~tvt~~l~   46 (141)
T 1fx7_A            3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVS   46 (141)
T ss_dssp             TTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             56778999999999998449975199999997899168999999


No 181
>>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} (C:)
Probab=69.03  E-value=1.1  Score=23.86  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=14.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ++|++|||+.+|.|+++|++.+
T Consensus       214 ~ls~~EIA~~LgiS~~~V~q~~  235 (243)
T 1l0o_C          214 DQTQSEVASRLGISQVQMSRLE  235 (243)
T ss_dssp             ----------------------
T ss_pred             CCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9889999999895999999999


No 182
>>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131)
Probab=68.81  E-value=7.6  Score=18.58  Aligned_cols=75  Identities=12%  Similarity=0.046  Sum_probs=42.4

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHH-HHHCC
Q ss_conf             10221048999999985210111046799997433787786565654358999987642101------677777-64010
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS------LGHART-LVSTS  203 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is------~ghar~-Ll~~~  203 (300)
                      ...+|++-+ +..+..+.+.-+.|+.+||+.+|.++++|++.+.         .++..|-|.      ...-|. ++.+.
T Consensus        35 ~~~~lt~~q-~~iL~~i~~~~~~t~~~la~~l~~~~s~vs~~i~---------~L~~~glV~r~~~~d~~D~R~~~i~LT  104 (131)
T 2qww_A           35 ASLGLTIQQ-LAXINVIYSTPGISVADLTKRLIITGSSAAANVD---------GLISLGLVVKLNKTIPNDSXDLTLKLS  104 (131)
T ss_dssp             HHHTCCHHH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEESCC--CTTCTTCEEEEC
T ss_pred             HHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH---------HHHHHHHHHHHHCCCCCCCCEEEECCC
T ss_conf             874998899-9999999987998999999997864466626657---------999877865232023566652242567


Q ss_pred             -HHHHHHHHHHHC
Q ss_conf             -046899997422
Q gi|254780805|r  204 -DPLSLAQVIVSK  215 (300)
Q Consensus       204 -~~~~la~~Ii~~  215 (300)
                       ...++.+.+...
T Consensus       105 ~~G~~~~~~~~~~  117 (131)
T 2qww_A          105 KKGEDLSKRSTAN  117 (131)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHH
T ss_conf             7899999999999


No 183
>>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:)
Probab=68.75  E-value=6.4  Score=19.07  Aligned_cols=33  Identities=9%  Similarity=0.111  Sum_probs=25.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101110467999974337877865656
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      .+..+...-+.|+.+||+.+|.+++++++.++-
T Consensus        21 il~~l~~~~~~t~~eLa~~~~i~~~~~s~~l~~   53 (100)
T 1ub9_A           21 IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRV   53 (100)
T ss_dssp             HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf             999972678961999999885268744199998


No 184
>>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A (A:1-76)
Probab=68.61  E-value=1.1  Score=24.00  Aligned_cols=32  Identities=22%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +++...+++..+||+.+|.|+++|+..|+.|.
T Consensus        19 ~~L~~~~~~v~eLa~~~~is~stiS~HL~~L~   50 (76)
T 2qlz_A           19 SHLTCXECYFSLLSSKVSVSSTAVAKHLKIXE   50 (76)
T ss_dssp             HHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99981999699999998919889999999998


No 185
>>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101)
Probab=68.53  E-value=7.7  Score=18.55  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=24.4

Q ss_pred             HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999985210-111046799997433787786565
Q gi|254780805|r  142 LGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       142 ~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+..+... -+.|+.+||+.++.++++|++.++
T Consensus         7 ~vL~~l~~~~~~~t~~~la~~~~~~~~tvs~~i~   40 (67)
T 2fbh_A            7 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD   40 (67)
T ss_dssp             HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999998759996599999998978988999999


No 186
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318)
Probab=68.14  E-value=1.2  Score=23.67  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=18.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1046799997433787786565
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|..++|+++|.|++||++.|.
T Consensus         4 ~T~~dIA~~agVS~~TVSRaLn   25 (185)
T 3dbi_A            4 TTXLEVAKRAGVSKATVSRVLS   25 (185)
T ss_dssp             ----------------------
T ss_pred             CCHHHHHHHHCCCHHHHHHHHC
T ss_conf             8899999998988999999968


No 187
>>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122)
Probab=68.11  E-value=7.9  Score=18.49  Aligned_cols=50  Identities=8%  Similarity=0.084  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             221048999999985210111046799997433787786565654358999987642101
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS  192 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is  192 (300)
                      .++++. +...+..+...-+.|+.+||+.+|.++++|++.+         ..++..|-|.
T Consensus        30 ~~lt~~-~~~iL~~l~~~~~~t~~~la~~l~i~~~~vs~~i---------~~L~~~g~i~   79 (122)
T 1jgs_A           30 LDITAA-QFKVLCSIRCAACITPVELKKVLSVDLGALTRML---------DRLVCKGWVE   79 (122)
T ss_dssp             TTSCHH-HHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEE
T ss_pred             CCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEE
T ss_conf             597999-9999999987799899999999897886899999---------9998689879


No 188
>>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114)
Probab=67.97  E-value=7.4  Score=18.65  Aligned_cols=35  Identities=17%  Similarity=0.277  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus         4 q~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~   38 (87)
T 1lj9_A            4 QYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIK   38 (87)
T ss_dssp             HHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999838997999999998978858999999


No 189
>>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122)
Probab=67.85  E-value=7.5  Score=18.64  Aligned_cols=40  Identities=13%  Similarity=-0.004  Sum_probs=28.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+|++.+-. .+..+ ...+.|+.+||+++|.++++|++.++
T Consensus        33 ~~lt~~~~~-iL~~i-~~~~~t~~ela~~~~~~~~~vs~~i~   72 (122)
T 3f3x_A           33 MNLSYLDFS-ILKAT-SEEPRSMVYLANRYFVTQSAITAAVD   72 (122)
T ss_dssp             HSCCHHHHH-HHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHH-HHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             599999999-99999-92991999999997978868999999


No 190
>>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123)
Probab=67.82  E-value=7.6  Score=18.57  Aligned_cols=47  Identities=17%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1048999999985210-11104679999743378778656565435899998764210
Q gi|254780805|r  135 LNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      +++.+ ...+..+.+. ...|+.+||+.+|.++++|++.+         ..+...|-|
T Consensus         4 lt~~~-~~vL~~l~~~~~~~t~~~La~~~~~~~~~vs~~i---------~~L~~~GlI   51 (94)
T 2hr3_A            4 VQFSQ-LVVLGAIDRLGGDVTPSELAAAERXRSSNLAALL---------RELERGGLI   51 (94)
T ss_dssp             HHHHH-HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH---------HHHHHTTSE
T ss_pred             CCHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE
T ss_conf             89999-9999999976999899999999797988999999---------999866976


No 191
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:1-161,A:294-339)
Probab=67.61  E-value=1.3  Score=23.56  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=21.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             110467999974337877865656-54358999987
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMI  186 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l  186 (300)
                      ..|..+||++.|.|++|||+.|.= -...++..+.|
T Consensus         4 kvTikdIA~~aGVS~sTVSrvLng~~~Vs~eTr~rV   39 (207)
T 3h5o_A            4 GVTXHDVAKAAGVSAITVSRVLNQPQQVSEQLREKV   39 (207)
T ss_dssp             ------------------------------------
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             445999999989599999999589899999999999


No 192
>>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122)
Probab=67.48  E-value=7.1  Score=18.78  Aligned_cols=50  Identities=16%  Similarity=0.304  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             221048999999985210111046799997433787786565654358999987642101
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS  192 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is  192 (300)
                      -++++-+- ..+..+...-+.|+.+||+.+|.++++|++.+.         .++..|-|.
T Consensus        33 ~~lt~~~~-~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~---------~L~~~G~I~   82 (122)
T 3ech_A           33 LDLTPPDV-HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIR---------ELEGRNLVR   82 (122)
T ss_dssp             CCCCHHHH-HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHH---------HHHHTTSEE
T ss_pred             CCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHHHCEE
T ss_conf             89899999-999999987998999999997935726999999---------999961320


No 193
>>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130)
Probab=67.35  E-value=8.2  Score=18.36  Aligned_cols=50  Identities=12%  Similarity=0.174  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             022104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      +.++++.+-. .+..+....+.|+.+||+.+|.++++|++.++         .++..|-|
T Consensus        39 ~~~lt~~~~~-iL~~l~~~~~~t~~eLa~~~~i~~~~vs~~i~---------~L~~~glv   88 (130)
T 2eth_A           39 ISDXKTTELY-AFLYVALFGPKKXKEIAEFLSTTKSNVTNVVD---------SLEKRGLV   88 (130)
T ss_dssp             HHHSBHHHHH-HHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH---------HHHHTTSE
T ss_pred             HCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCE
T ss_conf             4699999999-99999985995999999998969989999999---------99878884


No 194
>>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=67.25  E-value=6.2  Score=19.13  Aligned_cols=48  Identities=17%  Similarity=0.074  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565654358
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLPS  180 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~~  180 (300)
                      +.++..+.|..++..+..++++|.--|+. +|+|+.+++..||.-+=|.
T Consensus        15 ~~ldT~~I~~~i~~eLk~~~IsQ~~Fa~~vl~rsQGtls~LLr~~~~Pk   63 (101)
T 2csf_A           15 NINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPS   63 (101)
T ss_dssp             CCCCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCC
T ss_conf             2233999999999999984864999999998027106999985447999


No 195
>>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} (H:376-438)
Probab=67.03  E-value=6  Score=19.23  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+|.++||+.+|.|+.+|++.-
T Consensus        20 ~~Tl~eIa~~lgiSrerVRqi~   41 (63)
T 1l9z_H           20 EHTLEEVGAYFGVTRERIRQIE   41 (63)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHH
T ss_conf             5129999999896999999999


No 196
>>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5} (A:)
Probab=66.95  E-value=5.2  Score=19.62  Aligned_cols=30  Identities=23%  Similarity=0.481  Sum_probs=24.2

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9852101110467999974337877865656
Q gi|254780805|r  145 EQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      .....++| +|...|+.||..++.|+..||-
T Consensus         7 ~dyv~~~G-~Q~kaA~~lGV~Q~AIsKAlra   36 (67)
T 2pij_A            7 SKYLEEHG-TQSALAAALGVNQSAISQXVRA   36 (67)
T ss_dssp             HHHHHHTC-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHC-CHHHHHHHCCCCHHHHHHHHHC
T ss_conf             99999946-2888999819778899999964


No 197
>>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111)
Probab=66.66  E-value=6.9  Score=18.87  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=28.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +|++.+ +..+..+.+.-+.|+.+||+.+|.+++++++.+.
T Consensus         4 glt~~~-~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~   43 (78)
T 1z91_A            4 NITYPQ-YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK   43 (78)
T ss_dssp             CCCHHH-HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCCHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             989999-9999998858999999999997968766889999


No 198
>>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119)
Probab=66.30  E-value=8.8  Score=18.17  Aligned_cols=55  Identities=25%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             HHHHCCCCCHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             543102210489999999-8521011104679999743378778656565435899998764210
Q gi|254780805|r  128 ENVQRKDLNPLEEALGYE-QLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       128 EN~~R~dl~p~e~A~~~~-~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      +.+...++++.+-..-+. ......++|+.+||+.+|.++++|++.+.         .+...|-|
T Consensus        22 ~~~~~~~l~~~~~~vL~~l~~~~~~~~t~~ela~~~~~~~~~vs~~v~---------~L~~~gli   77 (119)
T 3eco_A           22 QKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLR---------NLERKKLI   77 (119)
T ss_dssp             HHHGGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHH---------HHHHTTSE
T ss_pred             HHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCE
T ss_conf             999885979999999999995599997999999998968889999999---------99988896


No 199
>>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133)
Probab=66.00  E-value=8  Score=18.45  Aligned_cols=44  Identities=11%  Similarity=0.116  Sum_probs=31.5

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310221048999999985210111046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +...+|++.+-. .+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus         6 ~~~~~l~~~~~~-iL~~i~~~~~~t~~~la~~~~~~~~~vsr~i~   49 (103)
T 3cdh_A            6 IRAQGLRVPEWR-VLACLVDNDAXXITRLAKLSLXEQSRXTRIVD   49 (103)
T ss_dssp             HHHTTCCHHHHH-HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf             988397999999-99999818895999999996888643655699


No 200
>>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72)
Probab=65.97  E-value=8.2  Score=18.37  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=23.3

Q ss_pred             HHHHHHHCC--CCHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             998521011--104679999743-378778656565
Q gi|254780805|r  144 YEQLISEYG--YTQNDIGSIVGK-SRSHVANILRIL  176 (300)
Q Consensus       144 ~~~l~~~~~--~t~~~lA~~~G~-s~s~V~~~LrLl  176 (300)
                      +.+...+.|  .|..+|++.+|. |.++|.++|.-|
T Consensus        15 I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~L   50 (72)
T 1jhf_A           15 IRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL   50 (72)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             999999829897699999982999737899987513


No 201
>>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108)
Probab=65.37  E-value=6.7  Score=18.95  Aligned_cols=36  Identities=14%  Similarity=0.112  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++..+..+.+.-+.|+.+||+.++.+++++++.+.
T Consensus         6 ~~~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~   41 (76)
T 2bv6_A            6 PQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLK   41 (76)
T ss_dssp             HHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999999807994999999997988737999999


No 202
>>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Probab=65.35  E-value=9.2  Score=18.05  Aligned_cols=44  Identities=11%  Similarity=-0.011  Sum_probs=30.6

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4310221048999999985210111046799997433787786565
Q gi|254780805|r  129 NVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       129 N~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .....++++.+-. .+.. +.+.+.|+.+||+.+|.++++|++.+.
T Consensus        29 ~~~~~~lt~~q~~-vL~~-l~~~~~t~~~la~~~~~~~~~vs~~i~   72 (121)
T 2gxg_A           29 RLGELNLSYLDFL-VLRA-TSDGPKTMAYLANRYFVTQSAITASVD   72 (121)
T ss_dssp             HHHTTTCCHHHHH-HHHH-HTTSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHCCCCHHHHH-HHHH-HHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8877697999999-9999-985997999999998979879999999


No 203
>>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} (A:)
Probab=65.18  E-value=4.3  Score=20.15  Aligned_cols=27  Identities=26%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011104679999743378778656
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.++.|| ++..+|+.+|.+++.|++-=
T Consensus         5 ~ai~~~G-~~~~lA~~lgvs~~aVs~W~   31 (61)
T 1rzs_A            5 DVIDHFG-TQRAVAKALGISDAAVSQWK   31 (61)
T ss_dssp             HHHHHHS-SHHHHHHHHTCCHHHHHHCC
T ss_pred             HHHHHHC-CHHHHHHHHCCCHHHHHHCC
T ss_conf             9999968-89999999299999998726


No 204
>>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139)
Probab=64.79  E-value=9.4  Score=17.98  Aligned_cols=76  Identities=11%  Similarity=0.128  Sum_probs=42.5

Q ss_pred             HHHCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHC
Q ss_conf             4310221048999999985210-11104679999743378778656565435899998764210----1677777-6401
Q gi|254780805|r  129 NVQRKDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHART-LVST  202 (300)
Q Consensus       129 N~~R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar~-Ll~~  202 (300)
                      .....+|++-+-. .+..+... -+.|+.+||+.+|.++++|++.+         +.++..|-|    +....|. .+.+
T Consensus        45 ~~~~~gl~~~~~~-iL~~l~~~~~~~t~~~La~~~~i~~~~vs~~i---------~~L~~~gli~r~~~~~D~R~~~i~L  114 (139)
T 3deu_A           45 RLKPLELTQTHWV-TLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTL---------DQLEDKGLISRQTCASDRRAKRIKL  114 (139)
T ss_dssp             HTTTTTCCHHHHH-HHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHH---------HHHHHTTSEEEC--------CEEEE
T ss_pred             HHHHCCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEEEEECCCCCEEEEEE
T ss_conf             9887697999999-99999976989999999999896998999999---------9999698879862068987578898


Q ss_pred             CH-HHHHHHHHHH
Q ss_conf             00-4689999742
Q gi|254780805|r  203 SD-PLSLAQVIVS  214 (300)
Q Consensus       203 ~~-~~~la~~Ii~  214 (300)
                      .+ ..++.+++..
T Consensus       115 T~~G~~~~~~~~~  127 (139)
T 3deu_A          115 TEKAEPLIAEMEE  127 (139)
T ss_dssp             CGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9889999999999


No 205
>>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77)
Probab=64.55  E-value=8.3  Score=18.35  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..+||+.+|.|+.+|...|+.|.
T Consensus        38 ser~La~~~~VSr~tvr~Al~~L~   61 (77)
T 3f8m_A           38 AEREIAEQFEVARETVRQALRELL   61 (77)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             699999997969999999999999


No 206
>>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} (A:1-62)
Probab=64.30  E-value=7.5  Score=18.60  Aligned_cols=30  Identities=10%  Similarity=0.153  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.-+++|..   .+|..+|+.+|.+.|+|++.-
T Consensus        16 s~iL~rLa~---~gq~~vAe~iGvd~StiSR~K   45 (62)
T 1zs4_A           16 SALLNKIAM---LGTEKTAEAVGVDKSQISRWK   45 (62)
T ss_dssp             HHHHHHHHH---HCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHH---HCCHHHHHHHCCCHHHHHHHH
T ss_conf             999999999---720468998399899998998


No 207
>>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} (A:107-238)
Probab=64.11  E-value=4.9  Score=19.81  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             11046799997433-78778656565435899998764210167
Q gi|254780805|r  152 GYTQNDIGSIVGKS-RSHVANILRILKLPSSVREMIRKEEISLG  194 (300)
Q Consensus       152 ~~t~~~lA~~~G~s-~s~V~~~LrLl~L~~~i~~~l~~~~is~g  194 (300)
                      .+|+++||..+|.| |.+|++.|+         ++-.+|.|...
T Consensus        63 ~lt~~elA~~~G~s~retvsr~l~---------~l~~~G~I~~~   97 (132)
T 2bgc_A           63 NLTMQELGYSSGIAHSSAVSRIIS---------KLKQEKVIVYK   97 (132)
T ss_dssp             CCCHHHHHHHTTCCCHHHHHHHHH---------HHHHTTSEEEE
T ss_pred             CCCHHHHHHHHCCCCHHHHHHHHH---------HHHHCCCEEEC
T ss_conf             767999999958982779999999---------99988989963


No 208
>>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=64.00  E-value=8.8  Score=18.19  Aligned_cols=26  Identities=19%  Similarity=0.442  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565654
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +.+..+||+.+|.++++|+..|+.|.
T Consensus        43 ~~~~~eLa~~~~i~~stvs~HL~~L~   68 (96)
T 1y0u_A           43 GRSEEEIXQTLSLSKKQLDYHLKVLE   68 (96)
T ss_dssp             TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             41788999998939889999999998


No 209
>>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91)
Probab=63.94  E-value=9.8  Score=17.88  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=21.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565654
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .++..+||+.+|.|+++|...|..|.
T Consensus        49 ~l~e~~La~~~gvSr~tvr~Al~~L~   74 (91)
T 3c7j_A           49 ALRQQELATLFGVSRXPVREALRQLE   74 (91)
T ss_dssp             BCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             63899999998869549999999999


No 210
>>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135)
Probab=63.86  E-value=7.7  Score=18.54  Aligned_cols=57  Identities=21%  Similarity=0.108  Sum_probs=35.8

Q ss_pred             HHHHHCCCCCHHHHHHHHH--HHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             6543102210489999999--852101--11046799997433787786565654358999987642101
Q gi|254780805|r  127 VENVQRKDLNPLEEALGYE--QLISEY--GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS  192 (300)
Q Consensus       127 ~EN~~R~dl~p~e~A~~~~--~l~~~~--~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is  192 (300)
                      ..+-..-+|++-|.+.-..  ...++.  -.|.++||+.+|+|+++|.+.|+         .++..|-|+
T Consensus         7 ~~~~~~l~Ls~~~~~vl~~l~~~~~~g~~~pS~~~iA~~~g~s~~tV~~~l~---------~L~~~Gli~   67 (120)
T 2v79_A            7 LTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLR---------MFIQKGFLF   67 (120)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHH---------HHHHHTSCE
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE
T ss_conf             9878885999999999999999987699998999999996989999999999---------999889979


No 211
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=63.75  E-value=9.8  Score=17.86  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..++|+.+|.|+++|.+.|+.|.
T Consensus        35 se~~La~~~~vSr~tvr~al~~L~   58 (76)
T 3edp_A           35 NETALQEIYSSSRTTIRRAVDLLV   58 (76)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             899999997949999999999999


No 212
>>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96)
Probab=63.56  E-value=7.1  Score=18.78  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.+||+.+|.|+++|...|++|.
T Consensus        55 s~~~La~~~gvsr~tvr~Al~~L~   78 (96)
T 3eet_A           55 SQARIREEYGVSDTVALEARKVLX   78 (96)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             799999998959999999999999


No 213
>>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:69-133)
Probab=62.74  E-value=7.8  Score=18.50  Aligned_cols=28  Identities=21%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.+...+|.+++|+.+|.|+++.++..+
T Consensus        20 i~~~~~itl~~lA~~~~~S~~~l~r~Fk   47 (65)
T 1u8b_A           20 LEQETPVTLEALADQVAXSPFHLHRLFK   47 (65)
T ss_dssp             TCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf             7236999999995471999899999999


No 214
>>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} (A:1-105)
Probab=62.03  E-value=11  Score=17.66  Aligned_cols=52  Identities=13%  Similarity=0.054  Sum_probs=31.8

Q ss_pred             CCHHHHH--HHHHHHHHHCC--CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             1048999--99998521011--10467999974--33787786565654358999987642101677
Q gi|254780805|r  135 LNPLEEA--LGYEQLISEYG--YTQNDIGSIVG--KSRSHVANILRILKLPSSVREMIRKEEISLGH  195 (300)
Q Consensus       135 l~p~e~A--~~~~~l~~~~~--~t~~~lA~~~G--~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh  195 (300)
                      |++-.+.  ..+.....+.|  .|..+||+.+|  .|.++|.+.|.         .+-..|.|.-.|
T Consensus        15 lt~Rq~~IL~~I~~~~~~~g~~vtv~el~~~~~l~vS~~TvrrdL~---------~Le~~G~l~r~h   72 (105)
T 1stz_A           15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK---------KLEYLGYIYQPH   72 (105)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH---------HHHHTTSEECCS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHH---------HHHHCCCCCCCC
T ss_conf             0899999999999999742995678999987289988699999999---------998787715899


No 215
>>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} (A:96-123,A:177-281)
Probab=61.97  E-value=8.4  Score=18.31  Aligned_cols=30  Identities=33%  Similarity=0.458  Sum_probs=26.4

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||.||- ..++++.+.++++-.+++|++
T Consensus        37 ~i~nP~NPTG~~~s~~~l~~i~~~a~~~~v~   67 (133)
T 3g7q_A           37 CVSRPTNPTGNVITDEELXKLDRLANQHNIP   67 (133)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf             0123323323333322201343210333343


No 216
>>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127)
Probab=61.91  E-value=8.8  Score=18.18  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=30.4

Q ss_pred             HHCCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310221048999999985-210111046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQL-ISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l-~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.+.++++.+-..-+.-. ..+.++|+.+||+.+|.++++|++.++
T Consensus         8 l~~~glt~~~~~vL~~l~~~~~~~~t~~~La~~~~~~~~~vs~~i~   53 (101)
T 3jw4_A            8 LAELGLNSQQGRXIGYIYENQESGIIQKDLAQFFGRRGASITSXLQ   53 (101)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8776979999999999980899997999999998978858999999


No 217
>>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74)
Probab=61.53  E-value=11  Score=17.61  Aligned_cols=47  Identities=13%  Similarity=0.095  Sum_probs=33.2

Q ss_pred             HCCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1022104899999998521---0111046799997433787786565654
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLIS---EYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~---~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ...+|++.|...+-.-+-.   -..+|..++|+..|.|.++|.+..+=+.
T Consensus        11 ~~~~lt~~e~~ia~yil~~~~~~~~~si~eiA~~~~vS~stv~Rf~kklG   60 (74)
T 3iwf_A           11 QYPYFTKNEKKIAQFILNYPHKVVNXTSQEIANQLETSSTSIIRLSKKVT   60 (74)
T ss_dssp             HGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred             HHHHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             88544899999999999199999776399999997999989999999958


No 218
>>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:)
Probab=61.44  E-value=11  Score=17.60  Aligned_cols=42  Identities=12%  Similarity=0.067  Sum_probs=28.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             02210489999999852101--11046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEY--GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~--~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++..+ +..+..+....  .+|+.+||+.+|.++++|++.+.
T Consensus        32 ~~gl~~~~-~~iL~~l~~~~~~~~t~~ela~~l~i~~~~vs~~v~   75 (127)
T 2frh_A           32 EFSISFEE-FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVK   75 (127)
T ss_dssp             TTCCCHHH-HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred             HCCCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             74989999-999999984689991899999997989868999999


No 219
>>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124)
Probab=61.25  E-value=11  Score=17.58  Aligned_cols=44  Identities=11%  Similarity=0.132  Sum_probs=30.3

Q ss_pred             HHCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310221048999999985210-111046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+.+|++.+-. .+..|... -++|+.+||+.+|.++++|++.+.
T Consensus        32 ~~~~~lt~~q~~-iL~~l~~~~~~~t~~ela~~~~~~~~~vs~~i~   76 (124)
T 3fm5_A           32 LVPTGLRVRSYS-VLVLACEQAEGVNQRGVAATXGLDPSQIVGLVD   76 (124)
T ss_dssp             HGGGTCCHHHHH-HHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHCCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             988498999999-999999859898999999997887777889999


No 220
>>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119)
Probab=60.69  E-value=11  Score=17.57  Aligned_cols=52  Identities=12%  Similarity=0.165  Sum_probs=34.6

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             31022104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      ....++++.+ +..+..+.+.-+.|+.+||+.++.++++|++.+         ..++..|-|
T Consensus        29 ~~~~~lt~~q-~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i---------~~L~~~gli   80 (119)
T 3hsr_A           29 LKEYDLTYTG-YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLL---------KKLEKKDYV   80 (119)
T ss_dssp             HGGGTCCHHH-HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE
T ss_pred             HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE
T ss_conf             9885989999-999999987799899999999896886899999---------999817956


No 221
>>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487)
Probab=60.53  E-value=7.8  Score=18.50  Aligned_cols=26  Identities=8%  Similarity=0.055  Sum_probs=21.7

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10111046799997433787786565
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...++|+.+||+.+|.++++|++.+.
T Consensus        17 ~~~~~t~~~l~~~l~~~~~~vs~~i~   42 (87)
T 1hsj_A           17 ESNEISSKEIAKCSEFKPYYLTKALQ   42 (87)
T ss_dssp             SCSEEEHHHHHHSSCCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCCCCCCHHHHHH
T ss_conf             15786499998641678112048898


No 222
>>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:)
Probab=60.35  E-value=11  Score=17.48  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=41.1

Q ss_pred             HHHHHHHH--CCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf             56665431--02210489999999852---1011104679999743378778656565435--8999987642
Q gi|254780805|r  124 IAIVENVQ--RKDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMIRKE  189 (300)
Q Consensus       124 ~~l~EN~~--R~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l~~~  189 (300)
                      +.+.+.+.  -..|+|.|.-.+=.-+-   .-...|..++|+..|.|.++|.|..+-+-..  ++++..+...
T Consensus         6 m~i~~~i~~~~~~Lt~~e~~ia~yil~n~~~~~~~si~eiA~~~~vS~sTI~Rf~kkLGy~gf~elk~~l~~~   78 (111)
T 2o3f_A            6 TGGLAIIQSXXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXXRVAGD   78 (111)
T ss_dssp             CCHHHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             1099999987262799999999999959247655579999999798999999999996679899999999999


No 223
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=59.82  E-value=12  Score=17.42  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1046799997433787786565654
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++..+||+.+|.|+++|...|+.|.
T Consensus        52 l~e~~La~~~~vSr~tvR~al~~L~   76 (94)
T 2hs5_A           52 LSEPDICAALDVSRNTVREAFQILI   76 (94)
T ss_dssp             ECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             6999999997959999999999999


No 224
>>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} (A:)
Probab=59.82  E-value=7.9  Score=18.47  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH
Q ss_conf             104899999998521011104679999-74337877865656543589999876421016777776401004
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDP  205 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~  205 (300)
                      ++..+.|.-++..+..++++|.--|+. +|+|+.+++.+|+=-+=|   -..+..|.-++-.-+--+.+++.
T Consensus         7 ~dt~~i~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~~PK~p---w~~~~~gre~~~rM~~wL~~p~~   75 (93)
T 2o4a_A            7 EVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDP---KTASQSLLVNLRAMQNFLQLPEA   75 (93)
T ss_dssp             CCCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCT---TSCCHHHHHHHHHHHHHHTSCHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             5409999999999999498799999999721827799998089993---14307777999999999829098


No 225
>>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} (A:1-62)
Probab=59.77  E-value=7.1  Score=18.76  Aligned_cols=30  Identities=10%  Similarity=0.153  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +..+++|..   .+|..+|+.+|.+.|+|++.-
T Consensus        15 s~iL~~la~---~gq~~vAe~iGv~eStISR~k   44 (62)
T 1xwr_A           15 SALLNKIAM---LGTEKTAEAVGVDKSQISRWK   44 (62)
T ss_dssp             HHHHHHHHH---HCHHHHHHHHTCCTTTHHHHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHCCCHHHHHHHH
T ss_conf             999999999---833548998298798851443


No 226
>>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114)
Probab=59.55  E-value=12  Score=17.39  Aligned_cols=35  Identities=14%  Similarity=0.120  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+..+...-+.|+.+||+.+|.+++++++.++
T Consensus         6 ~~~iL~~i~~~~~~t~~~la~~~~i~~~~~s~~i~   40 (71)
T 2pex_A            6 QYLVMLVLWETDERSVSEIGERLYLDSATLTPLLK   40 (71)
T ss_dssp             HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999847998999999997968878999999


No 227
>>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} (C:1-91)
Probab=59.47  E-value=12  Score=17.38  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHH
Q ss_conf             999998521011104679999743------37877865656
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILRI  175 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~LrL  175 (300)
                      |..|+.-.=..|+||.+++..+|.      |+++|++.-+|
T Consensus        13 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~fSQTtIcRFE~L   53 (91)
T 1e3o_C           13 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL   53 (91)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             99999850354775989999999534675213364178873


No 228
>>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114)
Probab=59.24  E-value=12  Score=17.35  Aligned_cols=54  Identities=15%  Similarity=0.233  Sum_probs=36.7

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5431022104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r  128 ENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       128 EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      +.....++++.+ +..+..+.+..++|+.+||+.+|.++++|++.+         ..++..|-|
T Consensus        20 ~~~~~~~lt~~q-~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i---------~~L~~~gli   73 (114)
T 3bpv_A           20 RELGHLNLTDAQ-VACLLRIHREPGIKQDELATFFHVDKGTIARTL---------RRLEESGFI   73 (114)
T ss_dssp             HHSGGGTCCHHH-HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE
T ss_pred             HHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE
T ss_conf             997427979999-999999985899899999999896988999999---------999968986


No 229
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333)
Probab=59.16  E-value=2.3  Score=21.96  Aligned_cols=23  Identities=9%  Similarity=0.232  Sum_probs=16.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|..+||++.|.|.+|||+.|.
T Consensus         6 k~Ti~dIA~~aGVS~aTVSRvLN   28 (205)
T 3jvd_A            6 KSSLKEVAELAGVGYATASRALS   28 (205)
T ss_dssp             -----------------------
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             98899999998969999999977


No 230
>>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75)
Probab=58.98  E-value=9.9  Score=17.85  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=23.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101110467999974337877865656
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      .+.++ |.+..++|++||.|.++|++.+..
T Consensus        36 ~~~~~-G~s~r~iArrf~VS~stv~kwl~R   64 (75)
T 2k27_A           36 DLAHQ-GVRPCDISRQLRVSHGCVSKILGR   64 (75)
T ss_dssp             HHHHH-TCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred             HHHHC-CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99975-998999998877659899999999


No 231
>>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:1-46)
Probab=58.63  E-value=12  Score=17.29  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=24.8

Q ss_pred             HHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999985-210111046799997433787786565
Q gi|254780805|r  138 LEEALGYEQL-ISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       138 ~e~A~~~~~l-~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++++..|=.- ..+-.+|.+++|+.+|.|+++.++..+
T Consensus         5 i~~~~~yI~~h~~~~~lsl~~lA~~~~~S~~yl~r~Fk   42 (46)
T 2k9s_A            5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR   42 (46)
T ss_dssp             HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999975689997999999998929999999999


No 232
>>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82)
Probab=58.54  E-value=12  Score=17.28  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=20.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..+||+.+|.|+++|...|+.|.
T Consensus        36 s~~~La~~~~vSr~tvr~Al~~L~   59 (82)
T 2wv0_A           36 SEREYAEQFGISRMTVRQALSNLV   59 (82)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             699999997969999999999999


No 233
>>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134)
Probab=58.46  E-value=12  Score=17.27  Aligned_cols=40  Identities=10%  Similarity=0.012  Sum_probs=28.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++++.+-. .+..+.+..+.|+.+||+.+|.++++|++.++
T Consensus        46 ~~t~~~~~-iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~   85 (134)
T 2fa5_A           46 GXAIPEWR-VITILALYPGSSASEVSDRTAXDKVAVSRAVA   85 (134)
T ss_dssp             CCCHHHHH-HHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999-99999858997999999998848889999999


No 234
>>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78)
Probab=58.35  E-value=12  Score=17.26  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      |..++|+.+|.|+++|.+.|..|.
T Consensus        30 se~~La~~~~vSr~tvr~al~~L~   53 (78)
T 2di3_A           30 SERALSETLGVSRSSLREALRVLE   53 (78)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             099999998959999999999988


No 235
>>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:259-314)
Probab=58.16  E-value=10  Score=17.75  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=26.0

Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHH--HHHHHHHHHHHHHH
Q ss_conf             9998521011--1046799997433--78778656565435
Q gi|254780805|r  143 GYEQLISEYG--YTQNDIGSIVGKS--RSHVANILRILKLP  179 (300)
Q Consensus       143 ~~~~l~~~~~--~t~~~lA~~~G~s--~s~V~~~LrLl~L~  179 (300)
                      +.++|..++|  -|.++||+.+|.|  ..-|...+++..-|
T Consensus        16 ~~~~l~q~~grept~eEiA~~l~~p~~~ekV~~~l~~~~~P   56 (56)
T 2a6h_F           16 TARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEP   56 (56)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf             99999998489984789998843541299999999972887


No 236
>>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56)
Probab=57.98  E-value=12  Score=17.22  Aligned_cols=43  Identities=12%  Similarity=0.021  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565654
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      -++=-++.+++..++.-|.|..++|+.+|.+.+++.+-++...
T Consensus         6 ys~EFK~~aV~l~~~~~g~sv~~vA~~~gi~~~tl~~Wvk~~~   48 (56)
T 2jn6_A            6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG   48 (56)
T ss_dssp             CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             9999999999999983898399999996998213039999972


No 237
>>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100)
Probab=57.61  E-value=8.3  Score=18.34  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1046799997433787786565
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +|+.+||+++|.+++++++.+.
T Consensus         2 it~~~la~~l~~~~~t~s~~i~   23 (51)
T 3bro_A            2 VLQRDLESEFSIKSSTATVLLQ   23 (51)
T ss_dssp             CBHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHH
T ss_conf             8999999887778236999999


No 238
>>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3} (A:130-257)
Probab=57.58  E-value=12  Score=17.24  Aligned_cols=86  Identities=16%  Similarity=0.076  Sum_probs=47.6

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             4533357567777764210013543334-641123455666543102210-48999999985210111046799997433
Q gi|254780805|r   88 LYKIIAGERRFRAAKMASLSEVPVIIRN-VDNKSSLEIAIVENVQRKDLN-PLEEALGYEQLISEYGYTQNDIGSIVGKS  165 (300)
Q Consensus        88 ~y~ii~G~rR~rAa~~~g~~~ip~iv~~-~~d~~~~~~~l~EN~~R~dl~-p~e~A~~~~~l~~~~~~t~~~lA~~~G~s  165 (300)
                      .|-.|++=-....-.++.+..||-.|.+ .+-.+...-+-.|    ++|. |+++-..|-...-+.+++.++++..+|.+
T Consensus        20 d~~pi~~L~Kt~V~~La~~l~vp~~ii~k~PSa~L~~~q~DE----~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~   95 (128)
T 2e18_A           20 DYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWEGQTDE----DELGISYNLLDEILWRMIDLKIGKEEIAKDLGIP   95 (128)
T ss_dssp             SBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSSTTCCHH----HHHTSCHHHHHHHHHHHHTSCCCHHHHHHTTTCC
T ss_pred             CHHHHCCHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCH----HCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf             213321447899999999609743210246785302368853----1048648889999999998499999999883979


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             787786565654
Q gi|254780805|r  166 RSHVANILRILK  177 (300)
Q Consensus       166 ~s~V~~~LrLl~  177 (300)
                      ...|.+..++..
T Consensus        96 ~~~v~~v~~~~~  107 (128)
T 2e18_A           96 LSLVERVEELIK  107 (128)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 239
>>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127)
Probab=57.21  E-value=13  Score=17.14  Aligned_cols=44  Identities=11%  Similarity=0.140  Sum_probs=31.5

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310221048999999985210111046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ....+|++.+-.. +..+...-+.|+.+||+.+|.++++|++.+.
T Consensus        35 ~~~~~lt~~~~~i-L~~i~~~~~~t~~~la~~~~i~~~~vs~~i~   78 (127)
T 2rdp_A           35 LTNYPITPPQFVA-LQWLLEEGDLTVGELSNKXYLACSTTTDLVD   78 (127)
T ss_dssp             HTTSSSCHHHHHH-HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHCCCCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             8777979999999-9999977994999999987845244889999


No 240
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:1-155,A:286-330)
Probab=56.60  E-value=2.7  Score=21.51  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=20.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             04679999743378778656565-4358999987
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI  186 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l  186 (300)
                      |..++|++.|.|++|||+.|.=. ...++..+.|
T Consensus         4 Ti~dIA~~aGVS~sTVSRaLn~~~~Vs~eTr~rV   37 (200)
T 3ctp_A            4 NIREIAKRAGISIATVSRHLNNTGYVSEDAREKI   37 (200)
T ss_dssp             ----------------------------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             8999999989399999999779799999999999


No 241
>>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118)
Probab=56.36  E-value=9.9  Score=17.84  Aligned_cols=43  Identities=9%  Similarity=0.036  Sum_probs=30.7

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210111046799997433787786565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...+|++.+- ..+..+.+.-+.|+.+||+.+|.++++|++.++
T Consensus        27 ~~~~lt~~~~-~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~   69 (118)
T 3bja_A           27 EQYDISYVQF-GVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQ   69 (118)
T ss_dssp             GGGTCCHHHH-HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHH
T ss_pred             HHCCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             7869799999-999999986998999999986857461879999


No 242
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349)
Probab=55.54  E-value=2.8  Score=21.33  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=22.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             104679999743378778656565-435899998764
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMIRK  188 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l~~  188 (300)
                      .|..+||++.|.|.+||++.|.=- ..+++..+.|.+
T Consensus         4 vTikDIA~~aGVS~aTVSraLN~~~~Vs~~TrerV~~   40 (219)
T 1jye_A            4 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEA   40 (219)
T ss_dssp             -------------------------------------
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             7899999998859999999967959999999999999


No 243
>>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72)
Probab=55.47  E-value=14  Score=16.96  Aligned_cols=30  Identities=13%  Similarity=0.172  Sum_probs=22.9

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.++|   .|-++||+..|.|+++|.++.+
T Consensus        40 ~~lf~~~G~~~~si~~Ia~~agvs~~~iY~~Fk   72 (72)
T 3bru_A           40 LEHLTEKGYSSVGVDEILKAARVPKGSFYHYFR   72 (72)
T ss_dssp             HHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf             999998491506799999986889632332578


No 244
>>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:)
Probab=55.32  E-value=3.7  Score=20.59  Aligned_cols=29  Identities=14%  Similarity=0.083  Sum_probs=24.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565654358
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILKLPS  180 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~  180 (300)
                      =++..++|+.+|.|+++|.+..+=-++|.
T Consensus        10 ~l~~~eva~~lgis~~ti~~~~~~G~~P~   38 (66)
T 1z4h_A           10 LVDLKFIMADTGFGKTFIYDRIKSGDLPK   38 (66)
T ss_dssp             EECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred             EECHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf             16499999997978999866731896148


No 245
>>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131)
Probab=55.02  E-value=14  Score=16.91  Aligned_cols=44  Identities=7%  Similarity=0.046  Sum_probs=31.0

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310221048999999985210111046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ....+|++.+ +..+..+.+.-+.|+.+||+.++.++++|++.+.
T Consensus        39 ~~~~glt~~q-~~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~   82 (131)
T 3k0l_A           39 LSALEISLPQ-FTALSVLAAKPNLSNAKLAERSFIKPQSANKILQ   82 (131)
T ss_dssp             HHTTTCCHHH-HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHH
T ss_pred             HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             8675989999-9999999967997999999985889464899999


No 246
>>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} (A:)
Probab=54.81  E-value=3  Score=21.21  Aligned_cols=11  Identities=9%  Similarity=0.302  Sum_probs=3.6

Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999886310
Q gi|254780805|r   64 EDLCQSIKSHG   74 (300)
Q Consensus        64 ~eLa~SI~~~G   74 (300)
                      ..+.......|
T Consensus        86 ~~~~~~~~~~~   96 (348)
T 3bil_A           86 TEIQSTASKAG   96 (348)
T ss_dssp             HHHHHHHHHTT
T ss_pred             CCCCCHHHHHH
T ss_conf             22110123321


No 247
>>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2jk3_A 2fx0_A (A:1-70)
Probab=54.29  E-value=12  Score=17.39  Aligned_cols=31  Identities=10%  Similarity=0.095  Sum_probs=23.2

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|   .|..+||+..|.|++++.++..
T Consensus        16 a~~l~~~~G~~~~ti~~Ia~~agis~~~~Y~~F~   49 (70)
T 2jj7_A           16 AKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN   49 (70)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCC
T ss_conf             9999998591407799999881988400104799


No 248
>>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138)
Probab=53.99  E-value=14  Score=16.80  Aligned_cols=41  Identities=10%  Similarity=0.014  Sum_probs=28.6

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+|++.+ +..+..+....+.|+.+||+.+|.++++|++.+.
T Consensus        49 ~glt~~q-~~iL~~l~~~~~~t~~ela~~~~~~~~~~s~~v~   89 (138)
T 3e6m_A           49 EKLPTPK-LRLLSSLSAYGELTVGQLATLGVXEQSTTSRTVD   89 (138)
T ss_dssp             HTCCHHH-HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             5979999-9999999856996999999997747988829999


No 249
>>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133)
Probab=53.87  E-value=8.5  Score=18.29  Aligned_cols=71  Identities=14%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHCCH-HH
Q ss_conf             210489999999852101-1104679999743378778656565435899998764210----1677777-640100-46
Q gi|254780805|r  134 DLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHART-LVSTSD-PL  206 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar~-Ll~~~~-~~  206 (300)
                      +|++.+-. .+..+.+.. ++|+.+||+.+|.++++|++.+.-         +...|-|    +....|. ++.+.+ ..
T Consensus        44 ~lt~~~~~-il~~l~~~~~~~t~~~la~~l~i~~~~vs~~i~~---------Le~~GlI~r~~~~~DrR~~~i~lT~~G~  113 (133)
T 3boq_A           44 GLSLAKFD-AXAQLARNPDGLSXGKLSGALKVTNGNVSGLVNR---------LIKDGXVVKAXSADDRRSFSAKLTDAGL  113 (133)
T ss_dssp             SCCHHHHH-HHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHH---------HHHHTSEEEC--------CEEEECHHHH
T ss_pred             CCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH---------HHHCCCEEEECCCCCCCEEEEEECHHHH
T ss_conf             93999999-9999985899988999998877789899999999---------9868886761066767514777898999


Q ss_pred             HHHHHHHH
Q ss_conf             89999742
Q gi|254780805|r  207 SLAQVIVS  214 (300)
Q Consensus       207 ~la~~Ii~  214 (300)
                      ++.+.+..
T Consensus       114 ~~~~~~~~  121 (133)
T 3boq_A          114 TTFKQASE  121 (133)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999999


No 250
>>3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} (A:104-159,A:203-307)
Probab=53.77  E-value=14  Score=16.88  Aligned_cols=31  Identities=26%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             HCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             8235789998-768988999999988631001
Q gi|254780805|r   46 SIVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        46 ~i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      -+.+||.||- ..++.+.+.+|++=.+++|++
T Consensus        64 iil~nP~NPTG~v~s~e~l~~La~~~~~~~i~   95 (161)
T 3if2_A           64 ICCSRPTNPTGNVLTDEEXAHLAEIAKRYDIP   95 (161)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             99899969968027899999998775404216


No 251
>>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A (A:205-295)
Probab=53.72  E-value=15  Score=16.78  Aligned_cols=54  Identities=15%  Similarity=0.249  Sum_probs=37.3

Q ss_pred             HHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23455666-54310221048999999985210111046799997433787786565
Q gi|254780805|r  120 SSLEIAIV-ENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       120 ~~~~~~l~-EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +...+-++ ++..-+.|++-..-.+.-|+-.. ..|-.+||+.+..|+|.|..+++
T Consensus        24 qi~~I~~i~~~~~~~~l~~~l~~~a~lRl~nP-e~SL~EL~~l~~iSKSgvnhrlr   78 (91)
T 3hyi_A           24 QIRAIELIKENMGLENLPEDLRRVALVRLRNK-ELSLRELGKKLNLTKSQIYSKLK   78 (91)
T ss_dssp             HHHHHHHHHHHTCGGGSCHHHHHHHHHHHHCT-TSCHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC-CCCHHHHHHCCCCCHHHHHHHHH
T ss_conf             99999999983695439999999999998687-77899994464878999989999


No 252
>>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:)
Probab=53.19  E-value=15  Score=16.72  Aligned_cols=45  Identities=11%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210111046799997433787786565654
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .|...++=..+.+++.+ +. |.+..++|+.+|.+.+++.+-++-..
T Consensus        19 ~rr~yt~efK~~av~~~-~~-G~sv~eva~~~gIs~stl~~W~k~~~   63 (87)
T 2elh_A           19 PLRSLTPRDKIHAIQRI-HD-GESKASVARDIGVPESTLRGWCKNED   63 (87)
T ss_dssp             CCSSCCHHHHHHHHHHH-HH-TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH-HC-CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             88708999999999998-72-69999999997969999999999999


No 253
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:1-163,A:294-332)
Probab=52.97  E-value=3.3  Score=20.91  Aligned_cols=36  Identities=17%  Similarity=0.244  Sum_probs=25.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             110467999974337877865656-543589999876
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR  187 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~  187 (300)
                      ..|-.+||++.|.|.+|||+.|.= -..+++..+.|.
T Consensus         5 ~~Tl~dIA~~agVS~sTVSRvLn~~~~Vs~~TrerV~   41 (202)
T 2o20_A            5 TTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVL   41 (202)
T ss_dssp             -------------------------------------
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             8769999999796999999997896999999999999


No 254
>>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* (A:)
Probab=52.85  E-value=11  Score=17.65  Aligned_cols=21  Identities=10%  Similarity=0.142  Sum_probs=11.0

Q ss_pred             HHCCCCCCCCCCCCCHHHHHH
Q ss_conf             982357899987689889999
Q gi|254780805|r   45 HSIVPNPHNPRNYFESEGLED   65 (300)
Q Consensus        45 ~~i~~~p~~pR~~~~~~~l~e   65 (300)
                      +.|.-+-+.|-....+..|.+
T Consensus        31 ~~I~~G~l~pG~~Lpe~~La~   51 (226)
T 3dbw_A           31 EXILNHELKLGEKLNVRELSE   51 (226)
T ss_dssp             HHHHTTSSCTTCBCCHHHHHH
T ss_pred             HHHHCCCCCCCCCCCHHHHHH
T ss_conf             999849999809779999999


No 255
>>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} (A:37-101)
Probab=52.84  E-value=15  Score=16.69  Aligned_cols=33  Identities=12%  Similarity=0.111  Sum_probs=25.2

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101110467999974337877865656543
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      +++.+...|+.+|++.+|.|-++|++-=+-|+-
T Consensus        16 ~~L~~g~~syreI~~~tGaS~aTIsRvsr~L~~   48 (65)
T 1jhg_A           16 EELLRGEMSQRELKNELGAGIATITRGSNSLKA   48 (65)
T ss_dssp             HHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999839967999999969865667898999885


No 256
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355)
Probab=52.35  E-value=3.4  Score=20.80  Aligned_cols=16  Identities=31%  Similarity=0.451  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             4679999743378778
Q gi|254780805|r  155 QNDIGSIVGKSRSHVA  170 (300)
Q Consensus       155 ~~~lA~~~G~s~s~V~  170 (300)
                      ..+||+.+|.|.+||+
T Consensus        15 l~dIA~~aGVS~~TVS   30 (221)
T 3e3m_A           15 MRDVAKAAGVSRMTVS   30 (221)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHCCCHHHHH
T ss_conf             9999999885999999


No 257
>>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82)
Probab=51.05  E-value=10  Score=17.68  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..++|+.+|.|+.+|...+..|.
T Consensus        31 s~~~la~~~~vSr~tvr~Al~~L~   54 (82)
T 3bwg_A           31 VLETLXAQFEVSKSTITKSLELLE   54 (82)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             699999998939999999999999


No 258
>>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A (A:1-101)
Probab=50.16  E-value=11  Score=17.54  Aligned_cols=34  Identities=12%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             0467999974337877865656543589999876421016777
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA  196 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha  196 (300)
                      |..++|+.+|.|+.+|.+.|+.|         ...|-|...+.
T Consensus        30 se~~La~~~~VSr~tvr~Al~~L---------~~~Gli~~~~g   63 (101)
T 2ek5_A           30 STNELAAFHRINPATARNGLTLL---------VEAGILYKKRG   63 (101)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHH---------HTTTSEEEETT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHH---------HHCCCEEEECC
T ss_conf             79999999789958999999999---------97892799889


No 259
>>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106)
Probab=49.71  E-value=13  Score=17.19  Aligned_cols=33  Identities=12%  Similarity=-0.012  Sum_probs=24.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             046799997433787786565654358999987642101677
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGH  195 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh  195 (300)
                      +..++|+.+|.|+.+|...+..|         ..+|-|..-+
T Consensus        37 s~~~La~~~~vSr~tvr~Al~~L---------~~~G~i~~~~   69 (106)
T 3by6_A           37 SVRETALQEKINPNTVAKAYKEL---------EAQKVIRTIP   69 (106)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHH---------HHTTSEEEET
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHH---------HHCCEEEEEC
T ss_conf             49999999698989999999999---------9789079972


No 260
>>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77)
Probab=48.71  E-value=13  Score=17.14  Aligned_cols=23  Identities=17%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656565
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +..++|+.+|.|+.+|...+..|
T Consensus        33 s~~~La~~~~vSr~tvr~al~~L   55 (77)
T 1hw1_A           33 AERELSELIGVTRTTLREVLQRL   55 (77)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             69999999792999999999999


No 261
>>1aoy_A Arginine repressor; DNA-binding protein, expression regulation, DNA organization, winged helix; NMR {Escherichia coli} (A:)
Probab=48.18  E-value=18  Score=16.22  Aligned_cols=38  Identities=21%  Similarity=0.334  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHCC-CCHHHHHHHH---H---HHHHHHHHHHHHHHH
Q ss_conf             999998521011-1046799997---4---337877865656543
Q gi|254780805|r  141 ALGYEQLISEYG-YTQNDIGSIV---G---KSRSHVANILRILKL  178 (300)
Q Consensus       141 A~~~~~l~~~~~-~t~~~lA~~~---G---~s~s~V~~~LrLl~L  178 (300)
                      -..+++|+..+. .||++|...|   |   .+++|||+-|+-+.+
T Consensus        11 ~~~I~~lI~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eL~~   55 (78)
T 1aoy_A           11 VKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGA   55 (78)
T ss_dssp             HHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             999999998089789999999999839851109889999999398


No 262
>>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} (A:1-85)
Probab=48.09  E-value=18  Score=16.23  Aligned_cols=32  Identities=16%  Similarity=0.239  Sum_probs=24.2

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---1046799997433787786565
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..+++.+.|   .|..+||+..|.|++++.++..
T Consensus        31 aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~   65 (85)
T 2zb9_A           31 AVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWP   65 (85)
T ss_dssp             HHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHC
T ss_conf             99999998592406899999985636484127209


No 263
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=47.03  E-value=18  Score=16.11  Aligned_cols=40  Identities=15%  Similarity=0.074  Sum_probs=28.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +-++-+...|+..+.. .++|....|..+|..++|+.+++.
T Consensus        13 ~yt~e~l~~Ai~aV~~-g~mS~~~As~~y~IP~sTL~~ri~   52 (70)
T 2cob_A           13 QYNSEILEEAISVVMS-GKMSVSKAQSIYGIPHSTLEYKVK   52 (70)
T ss_dssp             CCCHHHHHHHHHHHHT-TSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH-CCEEEHHCCCCCCCCCCHHHHHHH
T ss_conf             3688899999999983-541222037530576501112277


No 264
>>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} (A:1-88)
Probab=46.86  E-value=18  Score=16.24  Aligned_cols=36  Identities=6%  Similarity=0.122  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565654
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .-..|..+.+ +| +-...|+.+|.|+++|++.++-++
T Consensus         8 ~l~~f~~v~~-~g-s~s~AA~~L~isq~avs~~i~~LE   43 (88)
T 3fzv_A            8 QLKYFVTTVE-CG-SVAEASRKLYIAQPSISTAVKGLE   43 (88)
T ss_dssp             HHHHHHHHHH-SS-SHHHHHHHHTCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHH-CC-CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999999998-09-999999998878889999999999


No 265
>>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, alternative splicing, mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 2vgz_A* (A:102-293)
Probab=46.85  E-value=19  Score=16.09  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=26.1

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||+||- ..++.+.++++++-.+++|+.
T Consensus        95 i~~~p~NPtG~~~s~~~l~~i~~~~~~~~~~  125 (192)
T 2r2n_A           95 TVPNGNNPTGNSLTSERKKEIYELARKYDFL  125 (192)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             9799999756566627789999987523664


No 266
>>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} (A:)
Probab=46.16  E-value=19  Score=16.02  Aligned_cols=30  Identities=23%  Similarity=0.435  Sum_probs=20.7

Q ss_pred             HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111--04679999743378778656
Q gi|254780805|r  144 YEQLISEYGY--TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~~--t~~~lA~~~G~s~s~V~~~L  173 (300)
                      -.+++.+.|+  |-.+||++.|.|++++.++.
T Consensus        21 A~~lf~~~G~~~T~~~IA~~aGvs~~tiY~~F   52 (224)
T 1t33_A           21 ALAQFGEYGLHATTRDIAALAGQNIAAITYYF   52 (224)
T ss_dssp             HHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             99999987907569999998389924215788


No 267
>>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90)
Probab=45.91  E-value=19  Score=16.00  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=27.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101110467999974337877865656543
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      .|..+ .+...|.++||.++|.+...+.+.||.+..
T Consensus        30 if~~l-~~~~~t~~eLa~~~g~~~~~l~rllr~l~~   64 (90)
T 3i53_A           30 VADHI-AAGHRTAAEIASAAGAHADSLDRLLRHLVA   64 (90)
T ss_dssp             HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             78897-279999999998869298999999999998


No 268
>>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} (A:1-72)
Probab=45.79  E-value=19  Score=15.99  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|..+||+..|.|++++.++..
T Consensus        18 ~~~~~~~G~~~~t~~~ia~~~gvs~~~~Y~~F~   50 (72)
T 3dew_A           18 TELFAQKGFYGVSIRELAQAAGASISXISYHFG   50 (72)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998592417799999996939999966658


No 269
>>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} (A:)
Probab=45.43  E-value=19  Score=15.97  Aligned_cols=30  Identities=13%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             HHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210--11104679999743378778656
Q gi|254780805|r  144 YEQLISE--YGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+  ++.|-.+||+..|.|+++|.++.
T Consensus        22 a~~l~~~~G~~~t~~~Ia~~agvs~~tiY~~F   53 (196)
T 2qwt_A           22 AYDTFAAEGLGVPMDEIARRAGVGAGTVYRHF   53 (196)
T ss_dssp             HHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             99999987967879999999596999999880


No 270
>>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} (A:1-50)
Probab=44.93  E-value=20  Score=15.95  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=22.9

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---104679999743378778656
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +-.+++.+.|   .|-++||+..|.|++++.++.
T Consensus        16 aA~~l~~~~G~~~~t~~~Ia~~agisk~~~y~~F   49 (50)
T 2g7s_A           16 CARTLIIRGGYNSFSYADISQVVGIRNASIHHHF   49 (50)
T ss_dssp             HHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             9999999739252889999998690999995761


No 271
>>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:)
Probab=44.82  E-value=8  Score=18.43  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      |..++|+.+|.|+++|.+.|+.|.
T Consensus        37 s~~~La~~~~vSr~tvr~Al~~L~   60 (102)
T 1v4r_A           37 SVADIRAQFGVAAKTVSRALAVLK   60 (102)
T ss_dssp             CHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             899999997979999999999999


No 272
>>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:1-75)
Probab=44.59  E-value=16  Score=16.59  Aligned_cols=32  Identities=9%  Similarity=0.030  Sum_probs=24.0

Q ss_pred             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101---11046799997433787786565
Q gi|254780805|r  143 GYEQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..+++.+.   +.|-.+||+..|.|++++.++..
T Consensus        15 aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~   49 (75)
T 2fd5_A           15 AATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ   49 (75)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             99999997194516899999873899426979819


No 273
>>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} (A:1-89)
Probab=44.05  E-value=20  Score=15.82  Aligned_cols=29  Identities=14%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10111046799997433787786565654
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+...|.++||+++|.+...+.+.||.+.
T Consensus        38 ~~g~~t~~eLa~~~g~~~~~l~rllr~l~   66 (89)
T 2ip2_A           38 ESGIDSDETLAAAVGSDAERIHRLMRLLV   66 (89)
T ss_dssp             HTTCCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             56999999999885949899999999998


No 274
>>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* (A:)
Probab=43.97  E-value=21  Score=15.81  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             HHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111---046799997433787786565
Q gi|254780805|r  143 GYEQLISEYGY---TQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~~---t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..+++.+.|+   |-.+||++.|.|++++.++..
T Consensus        12 aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F~   46 (185)
T 2yve_A           12 TAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP   46 (185)
T ss_dssp             HHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHCCCCCCC
T ss_conf             99999998592517899999986837402258799


No 275
>>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583)
Probab=43.94  E-value=5.6  Score=19.45  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999852101-11046799997433787786565
Q gi|254780805|r  139 EEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +....+..++.++ .+|..++++.+|.|+++|++.|+
T Consensus       107 ~~~~~i~~~l~~~~~it~~ei~~~~gis~~ti~r~L~  143 (174)
T 3lmm_A          107 ELTNAAXLWLSEVGDLATSDLXAXCGVSRGTAKACVD  143 (174)
T ss_dssp             -------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             7999999999977993999999997949999999999


No 276
>>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} (A:1-85)
Probab=43.75  E-value=21  Score=15.79  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=22.2

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---104679999743378778656
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+.|   .|.++||++.|.+++++.++.
T Consensus        53 ~~lf~~~G~~~~si~~IA~~agvs~~~~Y~yF   84 (85)
T 3bni_A           53 ADLLDEVGYDALSTRAVALRADVPIGSVYRFF   84 (85)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf             99999849330779999998288965201208


No 277
>>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} (A:)
Probab=43.75  E-value=21  Score=15.79  Aligned_cols=21  Identities=5%  Similarity=0.066  Sum_probs=12.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|..+||++.|.|++++.++.
T Consensus        23 ~t~~~IA~~aGvs~~tlY~~F   43 (209)
T 3bqy_A           23 LTXRRLAQAXDVQAGALYRYF   43 (209)
T ss_dssp             CCHHHHHHHHTSCHHHHHHHC
T ss_pred             CCHHHHHHHHCCCHHHHHHHC
T ss_conf             539999998790997999987


No 278
>>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} (A:1-75)
Probab=43.60  E-value=15  Score=16.62  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             110467999974337877865656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      =+|..++|+++|.+.+.|.++++=
T Consensus        31 ~LtlpevAe~Lgv~vtrV~~Lird   54 (75)
T 2kfs_A           31 TYDLPRVAELLGVPVSKVAQQLRE   54 (75)
T ss_dssp             EEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf             348999999969888999999987


No 279
>>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:1-88)
Probab=43.59  E-value=21  Score=15.77  Aligned_cols=37  Identities=8%  Similarity=0.116  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999998521011104679999743378778656565
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ++.-..|..+.+. | +-...|+.+|.++++|++.++-+
T Consensus         3 l~~l~~f~~v~~~-g-s~t~AA~~L~it~~avs~~i~~L   39 (88)
T 1ixc_A            3 FRQLKYFIAVAEA-G-NXAAAAKRLHVSQPPITRQXQAL   39 (88)
T ss_dssp             HHHHHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             7999999999980-9-99999999888889999999999


No 280
>>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:1-82)
Probab=43.52  E-value=20  Score=15.92  Aligned_cols=30  Identities=23%  Similarity=0.223  Sum_probs=23.1

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||++.|.|++++.++..
T Consensus        22 ~~l~~~~G~~~~ti~~ia~~agvs~~t~Y~~F~   54 (82)
T 1rkt_A           22 KTVFKRKGFELTTXKDVVEESGFSRGGVYLYFS   54 (82)
T ss_dssp             HHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCC
T ss_conf             999998192408899999985899652101689


No 281
>>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82)
Probab=43.50  E-value=21  Score=15.76  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565654
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .++..+||+.+|.|+++|...|+.|.
T Consensus        39 ~l~e~~La~~~~vSr~~vr~Al~~L~   64 (82)
T 3ihu_A           39 RLVETDLVAHFGVGRNSVREALQRLA   64 (82)
T ss_dssp             EECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             66999999998988899999999999


No 282
>>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA); HET: DNA; 2.30A {Rattus norvegicus} (A:1-82)
Probab=43.16  E-value=21  Score=15.73  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf             999998521011104679999743------3787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr  174 (300)
                      |..|+.-.=..|+||.+++..+|.      |+++|++.=+
T Consensus         9 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQTtIcRFE~   48 (82)
T 1au7_A            9 ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN   48 (82)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             9998886502798864677776641588655446676201


No 283
>>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82)
Probab=42.82  E-value=21  Score=15.70  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      -+-|.-|++..+++..+||+.+|.|...|...+
T Consensus         5 irIY~LLlek~~m~i~eI~keLglSeR~VRe~v   37 (64)
T 1sfx_A            5 VRIYSLLLERGGXRVSEIARELDLSARFVRDRL   37 (64)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf             999999980488879999999756701899999


No 284
>>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:)
Probab=42.57  E-value=21  Score=15.73  Aligned_cols=30  Identities=23%  Similarity=0.230  Sum_probs=19.9

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|-.+||+..|.|++++.++.
T Consensus        21 a~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F   53 (200)
T 2hyj_A           21 AAEIASEEGLDGITIGRLAEELEMSKSGVHKHF   53 (200)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             999999739441679999998783801276565


No 285
>>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} (A:1-90)
Probab=42.54  E-value=22  Score=15.67  Aligned_cols=40  Identities=10%  Similarity=0.064  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1104679999743378778656565435899998764210
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      .-||+++|..+|.+|++.-.--.=..---+-..+|.+..+
T Consensus        48 KkTqeelA~ElGi~R~~L~~WrTqn~~Fi~y~n~lAd~~L   87 (90)
T 2ao9_A           48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL   87 (90)
T ss_dssp             CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             7579999999574699999886044669999999999999


No 286
>>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:1-91)
Probab=42.48  E-value=22  Score=15.66  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999998521011104679999743378778656565
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ++.-..|..+.+. | +-...|+.+|.|+++|+..|+=+
T Consensus         4 ~~~l~~f~~i~~~-~-s~s~AA~~L~isq~avS~~i~~L   40 (91)
T 3fxq_A            4 LQTLQALICIEEV-G-SLRAAAQLLHLSQPALSAAIQQL   40 (91)
T ss_dssp             HHHHHHHHHHHHH-S-CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8999999999982-9-99999999898889999999999


No 287
>>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} (A:66-285)
Probab=42.39  E-value=22  Score=15.66  Aligned_cols=29  Identities=24%  Similarity=0.125  Sum_probs=22.6

Q ss_pred             CCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             35789998-768988999999988631001
Q gi|254780805|r   48 VPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        48 ~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      .+||.||- ..++.+.++++++-.+++|+.
T Consensus       113 ~~np~NPtG~~~~~~~~~~l~~~~~~~~~~  142 (220)
T 2q7w_A          113 HGCCHNPTGIDPTLEQWQTLAQLSVEKGWL  142 (220)
T ss_dssp             ECSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf             458889988406889998999986166416


No 288
>>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} (A:)
Probab=42.27  E-value=20  Score=15.88  Aligned_cols=27  Identities=19%  Similarity=0.186  Sum_probs=9.4

Q ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7642100135433346411234556665
Q gi|254780805|r  101 AKMASLSEVPVIIRNVDNKSSLEIAIVE  128 (300)
Q Consensus       101 a~~~g~~~ip~iv~~~~d~~~~~~~l~E  128 (300)
                      |+.+|... ..+-.-.++.+.+..++++
T Consensus        40 a~~agvs~-~tiY~~F~~K~~L~~~~~~   66 (195)
T 2iu5_A           40 MQTAKIRR-QTFYNYFQNQEELLSWIFE   66 (195)
T ss_dssp             HHHHTSCG-GGGGGTCSSHHHHHHHHHH
T ss_pred             HHHHCCCH-HHHHCCCCCHHHHHHHHHH
T ss_conf             99859684-3330127999999999999


No 289
>>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250)
Probab=42.06  E-value=22  Score=15.62  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=20.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             111046799997433787786565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...|+.+||+.+|.+++++++.+.
T Consensus        18 ~~~t~~~la~~l~~~~~~~s~~i~   41 (95)
T 1p4x_A           18 NIVLLKDLIETIHHKYPQTVRALN   41 (95)
T ss_dssp             CCEEHHHHHHHSSSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             967699999997888515999999


No 290
>>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... (B:1-71)
Probab=41.82  E-value=22  Score=15.64  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..++.+.|   .|..+||+..|.|++++.++..
T Consensus        12 ~~l~~~~G~~~~t~~~Ia~~agis~~t~y~~F~   44 (71)
T 3bqz_B           12 KELFIKNGYNATTTGEIVKLSESSKGNLYYHFK   44 (71)
T ss_dssp             HHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999997591517799999987909888814388


No 291
>>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} (A:)
Probab=41.72  E-value=22  Score=15.61  Aligned_cols=31  Identities=16%  Similarity=0.126  Sum_probs=21.8

Q ss_pred             HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011--1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG--YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|  .|-++||++.|.|++++.++..
T Consensus        24 a~~l~~~~G~~~ti~~Ia~~agvs~~tiY~~F~   56 (194)
T 2q24_A           24 AVRVFSEEGLDAHLERIAREAGVGSGTLYRNFP   56 (194)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             999999869567799999983878011998779


No 292
>>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} (A:)
Probab=41.03  E-value=23  Score=15.52  Aligned_cols=31  Identities=13%  Similarity=0.201  Sum_probs=19.7

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---104679999743378778656
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +..+++.+.|   .|..+||++.|.|++++.++.
T Consensus        16 aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F   49 (183)
T 1zk8_A           16 TAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV   49 (183)
T ss_dssp             HHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTC
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCC
T ss_conf             9999999709440579999998588943033228


No 293
>>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:181-225,A:375-471)
Probab=41.00  E-value=23  Score=15.52  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             HHHHHCCCC-HHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf             852101110-467999974337877865-----------65-65435899998764210167777764010046899997
Q gi|254780805|r  146 QLISEYGYT-QNDIGSIVGKSRSHVANI-----------LR-ILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVI  212 (300)
Q Consensus       146 ~l~~~~~~t-~~~lA~~~G~s~s~V~~~-----------Lr-Ll~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~I  212 (300)
                      .++.+.-|| ++++|+++|.|-+.|..-           -- |..=-+++-....+|.+|...+|+.+.    .++++.-
T Consensus        10 eilrenpwtphdeiarrlglsvsevegekdpessgiesiagilatdleeier~yeegrlseeayraave----iqlaelt   85 (142)
T 2csb_A           10 EILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIESIAGILATDLEEIERXYEEGRLSEEAYRAAVE----IQLAELT   85 (142)
T ss_dssp             HHHHHCTTCCHHHHHHHHTCCHHHHHCCSSSSSCSHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHH----HHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHH
T ss_conf             999608999728999984885334137779420118988889860499999998715644899988898----7799776


Q ss_pred             HHCCCCHHHHHHHHHHHHCC
Q ss_conf             42224778999999764102
Q gi|254780805|r  213 VSKKMSVRDTEELVQEQDNK  232 (300)
Q Consensus       213 i~~~LSVRe~E~lVk~~~~~  232 (300)
                      -+++..-..+|.+.+.+-++
T Consensus        86 kkegvgrktaerllrafgnp  105 (142)
T 2csb_A           86 KKEGVGRKTAERLLRAFGNP  105 (142)
T ss_dssp             TSTTCCHHHHHHHHHHHSSH
T ss_pred             HHCCCCHHHHHHHHHHHCCH
T ss_conf             54064565799999970998


No 294
>>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} (A:)
Probab=40.96  E-value=23  Score=15.52  Aligned_cols=31  Identities=19%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|   .|.++||++.|.|++++.++..
T Consensus        19 a~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~   52 (194)
T 2nx4_A           19 AWRLIAARGIEAANMRDIATEAGYTNGALSHYFA   52 (194)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCC
T ss_conf             9999997592506599999997909988853079


No 295
>>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} (A:)
Probab=40.81  E-value=23  Score=15.50  Aligned_cols=30  Identities=10%  Similarity=0.093  Sum_probs=19.5

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|-.+||+..|.|++++.++.
T Consensus        44 a~~l~~~~G~~~~ti~~IA~~agvs~~tiY~yF   76 (221)
T 3g7r_A           44 ATRIFYAEGIHSVGIDRITAEAQVTRATLYRHF   76 (221)
T ss_dssp             HHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf             999999849150749999998789968411068


No 296
>>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} (A:)
Probab=40.50  E-value=23  Score=15.47  Aligned_cols=31  Identities=16%  Similarity=0.127  Sum_probs=22.5

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|   .|-.+||++.|.|++++.++..
T Consensus        11 a~~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F~   44 (179)
T 2eh3_A           11 SKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFK   44 (179)
T ss_dssp             HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCC
T ss_conf             9999987393507599999986819340114289


No 297
>>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans} (A:1-74)
Probab=40.28  E-value=13  Score=17.01  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=37.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             1046799997433787786565654358999987642101677777640100468999974222477899999976
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQE  228 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk~  228 (300)
                      +|-.++|+.+|.|..++.-+-+.--++|....--.....+..|..       ...........++|+.++.+++..
T Consensus         2 ~tI~e~a~~~gvs~~tLR~ye~~gLi~p~~r~~~g~R~Y~~~~i~-------~l~~I~~l~~~G~~l~~i~~~l~~   70 (74)
T 2vz4_A            2 YSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLD-------RLQQILFYRELGFPLDEVAALLDD   70 (74)
T ss_dssp             BCHHHHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHH-------HHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHH-------HHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             518999999894999999987537868865699993100077889-------999999999969999999999957


No 298
>>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} (A:)
Probab=40.19  E-value=23  Score=15.44  Aligned_cols=21  Identities=29%  Similarity=0.224  Sum_probs=12.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|-.+||++.|.|++++.++.
T Consensus        32 ~t~~~IA~~agvs~~t~Y~yF   52 (219)
T 2w53_A           32 TTLEMIGARAGYTRGAVYWHF   52 (219)
T ss_dssp             CCHHHHHHHHTSCHHHHHTTC
T ss_pred             CCHHHHHHHHCCCCCHHHHHC
T ss_conf             879999998688844087638


No 299
>>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} (A:)
Probab=39.98  E-value=24  Score=15.42  Aligned_cols=29  Identities=21%  Similarity=0.261  Sum_probs=18.6

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---104679999743378778656
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+.|   .|-.+||++.|.|++++.++.
T Consensus        19 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F   50 (193)
T 2dg8_A           19 LDLIAEEGIARVSHRRIAQRAGVPLGSMTYHF   50 (193)
T ss_dssp             HHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999729040679999999890999997663


No 300
>>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} (A:)
Probab=39.86  E-value=24  Score=15.43  Aligned_cols=22  Identities=18%  Similarity=0.170  Sum_probs=15.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.|.++||+..|.|++++.++.
T Consensus        34 ~~si~~Ia~~agvs~~t~Y~yF   55 (215)
T 3e7q_A           34 GASVRKICAEAGVSVGLINHHY   55 (215)
T ss_dssp             HCCHHHHHHHHTCCHHHHHHHC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHC
T ss_conf             0779999999794888898885


No 301
>>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus} (A:1-72)
Probab=39.72  E-value=24  Score=15.39  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHH--HHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999--85210111---046799997433787786565654
Q gi|254780805|r  133 KDLNPLEEALGYE--QLISEYGY---TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       133 ~dl~p~e~A~~~~--~l~~~~~~---t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      -.+++.++..+..  .-+++.||   +.+++|..+|.|...|.+.+.++.
T Consensus        15 ~~~~~~~~~ia~~lI~~LD~~GyL~~~~~eia~~l~~~~~~ve~~l~~iq   64 (72)
T 2k9m_A           15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL   64 (72)
T ss_dssp             HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             89998999999999970898982567889999884788878999999997


No 302
>>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} (A:)
Probab=39.63  E-value=24  Score=15.38  Aligned_cols=30  Identities=3%  Similarity=0.102  Sum_probs=17.9

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|-.+||++.|.|++++.++.
T Consensus        19 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F   51 (201)
T 3iuv_A           19 AIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHF   51 (201)
T ss_dssp             HHHHHHTTCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             999999849030679999999785861798883


No 303
>>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} (A:1-82)
Probab=39.62  E-value=24  Score=15.38  Aligned_cols=30  Identities=7%  Similarity=0.101  Sum_probs=23.1

Q ss_pred             HHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             985210--111046799997433787786565
Q gi|254780805|r  145 EQLISE--YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+  |+.|..+||+..|.|++++.++..
T Consensus        26 ~~l~~~~G~~~t~~~ia~~agvs~~~~Y~~F~   57 (82)
T 2rek_A           26 AAEVARHGADASLEEIARRAGVGSATLHRHFP   57 (82)
T ss_dssp             HHHHHHHGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999879788799999996949989998859


No 304
>>1d5y_A ROB transcription factor; protein-DNA complex, ROB transcription factor; HET: DNA; 2.70A {Escherichia coli} (A:1-104)
Probab=39.44  E-value=20  Score=15.85  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+|.+++|+.+|.|++++++.++
T Consensus        19 ~~~~~~la~~~~~S~~~l~r~f~   41 (104)
T 1d5y_A           19 PLSLDNVAAKAGYSKWHLQRMFK   41 (104)
T ss_dssp             SCCCHHHHTTTSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999998939999999999


No 305
>>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} (A:)
Probab=39.24  E-value=24  Score=15.35  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=19.4

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+|+.+.|   .|-.+||++.|.|++++.++.
T Consensus        17 A~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~yF   49 (206)
T 1vi0_A           17 AVEVIAENGYHQSQVSKIAKQAGVADGTIYLYF   49 (206)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCC
T ss_conf             999999839340779999999598875798608


No 306
>>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} (A:)
Probab=38.54  E-value=25  Score=15.28  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |-.+||+..|.|++++.++.
T Consensus        25 s~~~Ia~~agvs~~t~Y~~F   44 (208)
T 2g3b_A           25 RVNDVAEVAGVSPGLLYYHF   44 (208)
T ss_dssp             CHHHHHHHHTSCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHCC
T ss_conf             29999999890999994018


No 307
>>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} (C:)
Probab=38.44  E-value=23  Score=15.53  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+--|+|..  ..+...|+|..++|+.+.+||-.|.+||.
T Consensus         6 L~~~e~aql--DVm~~L~~slhemaR~i~rSR~~ir~Yl~   43 (51)
T 1tc3_C            6 LSDTERAQL--DVMKLLNVSLHEMSRKISRSRHCIRVYLK   43 (51)
T ss_dssp             CCHHHHHHH--HHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             307899988--99999487699999999885999999956


No 308
>>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A (A:)
Probab=38.01  E-value=25  Score=15.22  Aligned_cols=29  Identities=21%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---104679999743378778656
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+.|   .|-.+||++.|.|++++.++.
T Consensus        24 ~~l~~~~G~~~~ti~~Ia~~aGvs~~tiY~~F   55 (220)
T 3lhq_A           24 LRLFSQQGVSATSLAEIANAAGVTRGAIYWHF   55 (220)
T ss_dssp             HHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf             99999849140779999998588933477618


No 309
>>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} (A:1-136)
Probab=37.66  E-value=26  Score=15.19  Aligned_cols=24  Identities=13%  Similarity=0.249  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             110467999974337877865656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      -++-++||+.+|.|+++|.+.|.-
T Consensus        28 ~~~s~~IA~~~~i~~~~l~kil~~   51 (136)
T 3k69_A           28 KVASRELAQSLHLNPVXIRNILSV   51 (136)
T ss_dssp             CBCHHHHHHHHTSCGGGTHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             736999999889099999999999


No 310
>>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} (A:)
Probab=37.59  E-value=26  Score=15.18  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             HHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             985210--11104679999743378778656
Q gi|254780805|r  145 EQLISE--YGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~--~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+  |+.|-.+||++.|.|++++.++.
T Consensus        30 ~~l~~~~G~~~si~~IA~~agvs~~tiY~~F   60 (215)
T 2hku_A           30 TELFLEHGEGVPITQICAAAGAHPNQVTYYY   60 (215)
T ss_dssp             HHHHHHHCTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf             9999985867859999998652214111143


No 311
>>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} (A:30-109)
Probab=37.57  E-value=26  Score=15.18  Aligned_cols=33  Identities=9%  Similarity=0.118  Sum_probs=25.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      |..| .+...|.++||+.+|.+...+.+.||.+.
T Consensus        16 f~~L-~~~p~t~~eLA~~~g~~~~~l~rllr~l~   48 (80)
T 1tw3_A           16 VDHI-LAGARTVKALAARTDTRPEALLRLIRHLV   48 (80)
T ss_dssp             HHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             7897-46998999999887909999999999998


No 312
>>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:)
Probab=37.24  E-value=26  Score=15.15  Aligned_cols=39  Identities=15%  Similarity=0.223  Sum_probs=27.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|.++-+.   ...| ..-|+|...|++..|.|.++++|.|.
T Consensus         6 ~~dWh~adI---~AaL-~krG~sLa~lsr~~gls~stl~nal~   44 (74)
T 1neq_A            6 ARDWHRADV---IAGL-KKRKLSLSALSRQFGYAPTTLANALE   44 (74)
T ss_dssp             SSSCCHHHH---HHHH-HTTSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred             CCCCCHHHH---HHHH-HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             688899999---9999-99688799999990998789999883


No 313
>>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} (A:)
Probab=37.15  E-value=26  Score=15.14  Aligned_cols=29  Identities=14%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             HHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210--111046799997433787786565
Q gi|254780805|r  146 QLISE--YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+  |+.|-.+||+..|.|++++.++..
T Consensus        20 ~l~~~~G~~~t~~~IA~~agvs~~tiY~~F~   50 (190)
T 3jsj_A           20 ALTYRDGVGIGVEALCKAAGVSKRSXYQLFE   50 (190)
T ss_dssp             HHHHHHCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf             9999869678599999997898230012189


No 314
>>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} (A:)
Probab=37.04  E-value=26  Score=15.13  Aligned_cols=53  Identities=15%  Similarity=0.092  Sum_probs=33.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0489999999852101110467999974337877865656543589999876421
Q gi|254780805|r  136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEE  190 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~  190 (300)
                      .-++.+..|-.-.-...+|.+++|+.+|.|++++++.++-...++  .+.+..-.
T Consensus       169 ~~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~s~--~~~i~~~R  221 (276)
T 3gbg_A          169 DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKF--RELINSIR  221 (276)
T ss_dssp             CHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCH--HHHHHHHH
T ss_conf             999999999985738999999999997979999999999949989--99999999


No 315
>>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:)
Probab=36.99  E-value=26  Score=15.12  Aligned_cols=30  Identities=23%  Similarity=0.124  Sum_probs=19.8

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|-.+||+..|.|++++.++.
T Consensus        16 a~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~yF   48 (197)
T 2gen_A           16 ALACFSEHGVDATTIEXIRDRSGASIGSLYHHF   48 (197)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHC
T ss_conf             999999869351779999998484964134518


No 316
>>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} (A:31-230)
Probab=36.88  E-value=25  Score=15.26  Aligned_cols=28  Identities=21%  Similarity=0.343  Sum_probs=18.5

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---104679999743378778656
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.|   .|..+||++.|.|++++.++.
T Consensus        11 ~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F   41 (200)
T 2iai_A           11 QVFIERGYDGTSXEHLSKAAGISKSSIYHHV   41 (200)
T ss_dssp             HHHHHHCTTTCCHHHHHHHHTSCHHHHTTTC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHCC
T ss_conf             9999859362609999998693876676607


No 317
>>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:)
Probab=36.83  E-value=26  Score=15.11  Aligned_cols=19  Identities=21%  Similarity=0.050  Sum_probs=8.9

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             0467999974337877865
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANI  172 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~  172 (300)
                      |-.+||+..|.|++++.++
T Consensus        29 si~~IA~~agvs~~tlY~~   47 (235)
T 2fbq_A           29 SLRLITSKAGVNLAAVNYH   47 (235)
T ss_dssp             CHHHHHHHHTSCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHH
T ss_conf             7999999979398899998


No 318
>>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69)
Probab=36.76  E-value=27  Score=15.10  Aligned_cols=32  Identities=13%  Similarity=0.040  Sum_probs=23.8

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---1046799997433787786565
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +...++.+.|   .|..+||+..|.|++++.++..
T Consensus        12 aa~~~~~~~G~~~~t~~~Ia~~~gis~~t~Y~~F~   46 (69)
T 3egq_A           12 AALRLYXKKPPHEVSIEEIAREAKVSKSLIFYHFE   46 (69)
T ss_dssp             HHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf             99999987292306799999986839420765089


No 319
>>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} (A:)
Probab=36.68  E-value=27  Score=15.09  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=13.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|-.+||+..|.|++++.++.
T Consensus        38 ~t~~~IA~~agvs~~tiY~yF   58 (208)
T 3cwr_A           38 XTXEGVASEAGIAKKTLYRFA   58 (208)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHC
T ss_pred             CCHHHHHHHCCCCCCCCCCCC
T ss_conf             479999987599877655789


No 320
>>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:)
Probab=36.59  E-value=16  Score=16.48  Aligned_cols=32  Identities=9%  Similarity=0.096  Sum_probs=24.2

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10111046799997433787786565654358
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILRILKLPS  180 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~  180 (300)
                      +..-+|.+|.|+.+|.|++++.++.+=..+|+
T Consensus        13 ek~~ltv~Eaa~ylgis~~~ly~l~~~~~ip~   44 (70)
T 1y6u_A           13 ERYTLTIEEASKYFRIGENKLRRLAEENKNAN   44 (70)
T ss_dssp             TSSEEEHHHHHHHTCSCHHHHHHHHHHCTTCS
T ss_pred             HHHEECHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf             74405799999995504999999998588998


No 321
>>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} (A:)
Probab=36.52  E-value=27  Score=15.07  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=21.3

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|.++||+..|.|++++.++.
T Consensus        21 a~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F   53 (198)
T 3cjd_A           21 AEAQIEAEGLASLRARELARQADCAVGAIYTHF   53 (198)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             999999749352579999999787545899984


No 322
>>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} (A:1-58)
Probab=36.50  E-value=26  Score=15.11  Aligned_cols=27  Identities=22%  Similarity=0.269  Sum_probs=20.7

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---10467999974337877865
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANI  172 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~  172 (300)
                      +|+.+.|   .|-.+||+..|.|++++.++
T Consensus        27 ~lf~~~G~~~~ti~~Ia~~agvs~~~lY~h   56 (58)
T 2oi8_A           27 EQIATAGASALSLNAIAKRXGXSGPALYRY   56 (58)
T ss_dssp             HHHHHHCTTSCCHHHHHHHTTCCHHHHHTT
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf             999982945388999999968872048675


No 323
>>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} (A:1-74)
Probab=36.43  E-value=27  Score=15.07  Aligned_cols=30  Identities=7%  Similarity=0.025  Sum_probs=22.7

Q ss_pred             HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9852101---11046799997433787786565
Q gi|254780805|r  145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.   +.|-.+||+..|.|++++.++..
T Consensus        18 ~~l~~~~G~~~~ti~~Ia~~~gvs~~t~Y~yF~   50 (74)
T 2d6y_A           18 VAEFARHGIAGARIDRIAAEARANKQLIYAYYG   50 (74)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999997491407799999985919889967877


No 324
>>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} (A:)
Probab=36.42  E-value=27  Score=15.06  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=17.4

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---104679999743378778656
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.|   .|-.+||++.|.|++++.++.
T Consensus        22 ~l~~~~G~~~~ti~~IA~~agvs~~tiY~yF   52 (196)
T 3he0_A           22 QLIAESGFQGLSXQKLANEAGVAAGTIYRYF   52 (196)
T ss_dssp             HHHHHHCTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred             HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             9999739130679999998099978651118


No 325
>>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} (A:26-108)
Probab=36.38  E-value=27  Score=15.06  Aligned_cols=30  Identities=10%  Similarity=0.107  Sum_probs=24.7

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             210111046799997433787786565654
Q gi|254780805|r  148 ISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +.+...|.+++|+++|.+...+.+.||.+.
T Consensus        20 L~~gp~t~~eLA~~~~~~~~~l~rlLr~L~   49 (83)
T 1qzz_A           20 LLAGADTLAGLADRTDTHPQALSRLVRHLT   49 (83)
T ss_dssp             HHTTCCSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             607998999999885919899999999998


No 326
>>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81)
Probab=36.31  E-value=27  Score=15.05  Aligned_cols=31  Identities=10%  Similarity=0.086  Sum_probs=23.7

Q ss_pred             HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99852101---11046799997433787786565
Q gi|254780805|r  144 YEQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.   +.|..+||+..|.|+++|.++..
T Consensus        25 a~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~   58 (81)
T 2qtq_A           25 ASNIXREGDVVDISLSELSLRSGLNSALVKYYFG   58 (81)
T ss_dssp             HHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999997196637899999997909889977756


No 327
>>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} (A:)
Probab=36.28  E-value=27  Score=15.05  Aligned_cols=22  Identities=9%  Similarity=0.140  Sum_probs=12.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.|..+||++.|.|++++.++.
T Consensus        29 ~~s~~~IA~~agvs~~t~Y~~F   50 (213)
T 2g7g_A           29 DFRXPDLARHLNVQVSSIYHHA   50 (213)
T ss_dssp             SCCHHHHHHHTTSCHHHHHTTS
T ss_pred             CCCHHHHHHHHCCCHHHHHHHC
T ss_conf             9609999999692854442566


No 328
>>2uxu_A HTH-type transcriptional regulator TTGR; repressor protein, transcription regulation, multidrug binding protein; HET: NAR; 2.3A {Pseudomonas putida} PDB: 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* (A:)
Probab=36.24  E-value=27  Score=15.05  Aligned_cols=31  Identities=23%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|   .|-.+||++.|.|++++.++..
T Consensus        20 A~~l~~~~G~~~~si~~IA~~agvs~~tiY~~F~   53 (210)
T 2uxu_A           20 AERAFYKRGVARTTLADIAELAGVTRGAIYWHFN   53 (210)
T ss_dssp             HHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCC
T ss_conf             9999998593528899999986889543764189


No 329
>>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} (A:15-79)
Probab=36.18  E-value=27  Score=15.04  Aligned_cols=50  Identities=14%  Similarity=0.119  Sum_probs=34.7

Q ss_pred             HHHHHHHCCCCCHHHHHHHHH--HHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             666543102210489999999--8521011--1046799997433787786565
Q gi|254780805|r  125 AIVENVQRKDLNPLEEALGYE--QLISEYG--YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       125 ~l~EN~~R~dl~p~e~A~~~~--~l~~~~~--~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|..|-++=.|++.|-..-++  +..++..  -|.+++|++.|.|..+|.+.+.
T Consensus         6 ~LL~~Y~~LGLt~~El~lllql~~~~~~g~~fPs~~~La~~m~~s~~~i~~~l~   59 (65)
T 2vn2_A            6 LLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVR   59 (65)
T ss_dssp             HHHTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999983998789999999999987699999999999896979999999999


No 330
>>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} (A:)
Probab=36.10  E-value=27  Score=15.03  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=18.6

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---104679999743378778656
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.|   .|..+||++.|.|++++.++.
T Consensus        21 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F   51 (196)
T 3col_A           21 AIILAEGPAGVSTTKVAKRVGIAQSNVYLYF   51 (196)
T ss_dssp             HHHHHHCGGGCCHHHHHHHHTSCHHHHHTTC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             9999719552889999998689967031058


No 331
>>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} (A:)
Probab=36.04  E-value=27  Score=15.03  Aligned_cols=37  Identities=14%  Similarity=0.175  Sum_probs=25.3

Q ss_pred             HHHHHHHHHH--HHHCCCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             8999999985--2101110467999974-33787786565
Q gi|254780805|r  138 LEEALGYEQL--ISEYGYTQNDIGSIVG-KSRSHVANILR  174 (300)
Q Consensus       138 ~e~A~~~~~l--~~~~~~t~~~lA~~~G-~s~s~V~~~Lr  174 (300)
                      +=.|+.+..+  .+..+++-.+||+.|| ++.++|....+
T Consensus        30 ~~~aR~iamyL~r~~~~~sl~~Ig~~fg~rdhSTV~~a~~   69 (94)
T 1j1v_A           30 VARPRQXAXALAKELTNHSLPEIGDAFGGRDHTTVLHACR   69 (94)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             8899999999999882899999999968998409999999


No 332
>>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} (A:)
Probab=35.82  E-value=27  Score=15.00  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=19.2

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        27 ~~l~~~~G~~~~si~~IA~~aGvs~~tlY~yF~   59 (218)
T 3gzi_A           27 RNLFIERPYAQVSIREIASLAGTDPGLIRYYFG   59 (218)
T ss_dssp             HHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCC
T ss_conf             999998392305799999986889640441599


No 333
>>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} (A:70-129)
Probab=35.75  E-value=27  Score=15.00  Aligned_cols=29  Identities=14%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             HHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101-11046799997433787786565
Q gi|254780805|r  146 QLISEY-GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..+| |....+||.+.|.|..||.+.++
T Consensus        16 ~I~~eFnG~N~~eLArkY~lS~~~I~~Ii~   45 (60)
T 1rr7_A           16 RIWNDFNGRNVSELTTRYGVTFNTVYKAIR   45 (60)
T ss_dssp             HHHHHCCSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999990899899999998977999999999


No 334
>>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} (A:)
Probab=35.53  E-value=28  Score=14.97  Aligned_cols=20  Identities=10%  Similarity=0.152  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |-.+||++.|.|++++.++.
T Consensus        37 si~~IA~~agvs~~tiY~~F   56 (221)
T 3c2b_A           37 TTSGLARAANCSKESLYKWF   56 (221)
T ss_dssp             CHHHHHHHHTCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCCCCHHHHC
T ss_conf             89999998589802052663


No 335
>>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} (A:)
Probab=35.45  E-value=28  Score=14.97  Aligned_cols=21  Identities=14%  Similarity=0.298  Sum_probs=12.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|-.+||++.|.|++++.++.
T Consensus        39 ~ti~~IA~~agvs~~tiY~~F   59 (212)
T 1pb6_A           39 TRLEQIAELAGVSKTNLLYYF   59 (212)
T ss_dssp             CCHHHHHHHTTSCHHHHHHHS
T ss_pred             CCHHHHHHHHCCCHHHHHHHC
T ss_conf             889999999794988897877


No 336
>>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} (A:1-95)
Probab=35.41  E-value=28  Score=14.96  Aligned_cols=30  Identities=23%  Similarity=0.130  Sum_probs=22.9

Q ss_pred             HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9852101---11046799997433787786565
Q gi|254780805|r  145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.   +.|.++||+..|.+++.|.++..
T Consensus        58 ~~l~~~~G~~~~ti~~Ia~~agvs~~slY~~F~   90 (95)
T 2of7_A           58 YGLIRQQGYEATTVEQIAERAEVSPSTVLRYFP   90 (95)
T ss_dssp             HHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998095527899999997939989999869


No 337
>>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} (A:)
Probab=35.17  E-value=28  Score=14.94  Aligned_cols=30  Identities=17%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|..+||++.|.|++++.++.
T Consensus        48 A~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F   80 (214)
T 2guh_A           48 AGRAFATRPYREITLKDIAEDAGVSAPLIIKYF   80 (214)
T ss_dssp             HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             999999839030679999999398988998886


No 338
>>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} (A:30-78)
Probab=34.95  E-value=5.2  Score=19.64  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=19.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.++|+.+|.|+++|.+.++.|.
T Consensus         8 s~r~la~~~~vsr~Tv~~a~~~L~   31 (49)
T 3ic7_A            8 SVREYASIVEVNANTVXRSYEYLQ   31 (49)
T ss_dssp             CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             899999875939999999999999


No 339
>>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} (A:)
Probab=34.92  E-value=28  Score=14.91  Aligned_cols=28  Identities=21%  Similarity=0.266  Sum_probs=17.2

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---104679999743378778656
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.|   .|-.+||+..|.|++++.++.
T Consensus        20 ~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F   50 (209)
T 2gfn_A           20 ALIAREGISAVTTRAVAEESGWSTGVLNHYF   50 (209)
T ss_dssp             HHHHHHCGGGCCHHHHHHHHSSCHHHHHHHT
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             9999839230779999999691999995425


No 340
>>2pbx_A Hemagglutinin/protease regulatory protein; quorum sensing, transcription factor, TETR family, DNA-binding, transcription regulation; 2.20A {Vibrio cholerae 2740-80} (A:)
Probab=34.91  E-value=28  Score=14.91  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=19.0

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---104679999743378778656
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.|   .|-.+||++.|.|++++.++.
T Consensus        28 ~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F   58 (203)
T 2pbx_A           28 EVFAKRGIGRGGHADIAEIAQVSVATVFNYF   58 (203)
T ss_dssp             HHHHHHCTTCCCHHHHHHHHTSCHHHHHHHS
T ss_pred             HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC
T ss_conf             9998719240779999988399854223268


No 341
>>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} (A:1-74)
Probab=34.83  E-value=25  Score=15.25  Aligned_cols=70  Identities=14%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             10467999974337877865656543589999876421016777776401004689999742224778999999764
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQ  229 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk~~  229 (300)
                      +|-.++|+.+|.|.+++..+-+.--|+|.....-.-...+.-|..       ...........++|..++..+....
T Consensus         1 lti~e~a~~~gvs~~tLR~ye~~gll~p~~r~~~g~R~Y~~~di~-------~l~~I~~lr~~G~~l~~i~~~l~~~   70 (74)
T 1q06_A            1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLN-------ELTLLRQARQVGFNLEESGELVNLF   70 (74)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHH-------HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHH-------HHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             978999999891999999999878989876699984431075899-------9999999998399999999998513


No 342
>>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=34.77  E-value=28  Score=14.90  Aligned_cols=29  Identities=17%  Similarity=0.219  Sum_probs=19.7

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---104679999743378778656
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+.|   .|-.+||++.|.|++++.++.
T Consensus        19 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~yF   50 (215)
T 1ui5_A           19 ADLFDRRGYESTTLSEIVAHAGVTKGALYFHF   50 (215)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC
T ss_conf             99999849452889999998688945086519


No 343
>>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} (C:151-209)
Probab=34.76  E-value=29  Score=14.90  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=24.0

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011104679999743378778656565435
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      .++.. |.+..+||+..|.||.+|.+.-+=+.|.
T Consensus        20 ~mL~~-G~~is~IAk~~gisRqTVYRIK~dl~l~   52 (59)
T 2r0q_C           20 EMLEE-GQAISKIAKEVNITRQTVYRIKHDNGLS   52 (59)
T ss_dssp             HHHHT-TCCHHHHHHHHTCCHHHHHHHHTTCC--
T ss_pred             HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf             99987-7999999999896999999999977998


No 344
>>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=34.75  E-value=24  Score=15.33  Aligned_cols=30  Identities=7%  Similarity=0.132  Sum_probs=20.3

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|-.+||++.|.|++++.++.
T Consensus        20 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~yF   52 (204)
T 3eup_A           20 TAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNF   52 (204)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             999999739462889999999790999997764


No 345
>>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} (A:231-343)
Probab=34.68  E-value=29  Score=14.89  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             CCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf             9822899985898999999998375
Q gi|254780805|r  271 NNKGQFCIKYETNEQLKIICSLLGE  295 (300)
Q Consensus       271 ~~kGkI~I~f~s~eeLe~Il~kL~~  295 (300)
                      +..|.+.|.|.+.++|++|-..||-
T Consensus        47 ~~~~~vRI~Y~~~~~fk~~Ak~lGi   71 (113)
T 1fo8_A           47 KELGEVRVQYTGRDSFKAFAKALGV   71 (113)
T ss_dssp             TTCSEEEEECCSHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHCC
T ss_conf             7887289997367789999987276


No 346
>>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} (A:42-232)
Probab=34.23  E-value=29  Score=14.84  Aligned_cols=23  Identities=13%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..++.++|..+|.++.+|++.|.
T Consensus       145 ~~~~~~la~~l~~sr~~v~r~l~  167 (191)
T 1zyb_A          145 KVKXDDLARCLDDTRLNISKTLN  167 (191)
T ss_dssp             ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             76999999897989999999999


No 347
>>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} (A:)
Probab=34.10  E-value=29  Score=14.83  Aligned_cols=22  Identities=14%  Similarity=0.178  Sum_probs=15.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.|..+||++.|.|++++.++.
T Consensus        60 ~~ti~~Ia~~agvs~~tiY~~F   81 (225)
T 2id3_A           60 ALDLGEIARRAGVGKTTVYRRW   81 (225)
T ss_dssp             GCCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCCCCCCCC
T ss_conf             0779999998189966413578


No 348
>>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51)
Probab=34.07  E-value=29  Score=14.83  Aligned_cols=29  Identities=17%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---104679999743378778656
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+.|   .|-++||++.|.+.+.|.++.
T Consensus        19 ~~lf~~~G~~~~s~~~Ia~~aGvs~g~iY~~F   50 (51)
T 3cdl_A           19 IAEFGDRGFEITSXDRIAARAEVSKRTVYNHF   50 (51)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHC
T ss_conf             99999749251889999998688966145308


No 349
>>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} (A:)
Probab=33.88  E-value=29  Score=14.81  Aligned_cols=19  Identities=32%  Similarity=0.419  Sum_probs=7.5

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             0467999974337877865
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANI  172 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~  172 (300)
                      |-.+||++.|.|++++.++
T Consensus        45 si~~IA~~agvs~~t~Y~~   63 (231)
T 2zcx_A           45 TLTDIAATVGMHKSALLRY   63 (231)
T ss_dssp             CHHHHHHHHTSCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHH
T ss_conf             7999999969598999788


No 350
>>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} (A:1-74)
Probab=33.78  E-value=23  Score=15.47  Aligned_cols=69  Identities=10%  Similarity=0.009  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             1104679999743378778656565435899998764210167777764010046899997422247789999997
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQ  227 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk  227 (300)
                      -+|-.++|+.+|.+.+++..+-+.--++|+....=.-...+..|..       ...........+++..++.+++.
T Consensus         4 ~yti~eva~~~gvs~~tlR~ye~~gll~~~~r~~~g~R~Y~~~di~-------~l~~I~~l~~~G~~l~~i~~~l~   72 (74)
T 3hh0_A            4 AWLISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLY-------VLQQIQSFKHLGFSLGEIQNIIL   72 (74)
T ss_dssp             CBCHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTSCEEBCHHHHH-------HHHHHHHHHHTTCCHHHHHHHHT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHH-------HHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             7749999999894989999999878989762089995441076899-------99999999987989999999987


No 351
>>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} (A:)
Probab=33.77  E-value=30  Score=14.79  Aligned_cols=11  Identities=9%  Similarity=0.205  Sum_probs=4.8

Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999886310
Q gi|254780805|r   64 EDLCQSIKSHG   74 (300)
Q Consensus        64 ~eLa~SI~~~G   74 (300)
                      +....-+.++|
T Consensus        23 ~aa~~l~~~~G   33 (237)
T 2hxo_A           23 GAAVELLDTVG   33 (237)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHC
T ss_conf             99999999719


No 352
>>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} (A:)
Probab=33.77  E-value=30  Score=14.79  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=19.2

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---104679999743378778656
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.|   .|-.+||++.|.|++++.++.
T Consensus        25 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF   55 (204)
T 2ibd_A           25 TLFAERGLRATTVRDIADAAGILSGSLYHHF   55 (204)
T ss_dssp             HHHHHHCSTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf             9999849341779999998688830688876


No 353
>>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A (A:)
Probab=33.60  E-value=30  Score=14.78  Aligned_cols=32  Identities=19%  Similarity=0.336  Sum_probs=23.0

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---1046799997433787786565
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..+++.+.|   .|..+||++.|.|++++.++..
T Consensus        16 aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F~   50 (195)
T 3frq_A           16 AATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFT   50 (195)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             99999998492307799999987899404887493


No 354
>>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:)
Probab=33.38  E-value=30  Score=14.75  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=13.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|-++||++.|.|++++.++.
T Consensus        27 ~si~~Ia~~agvs~~tiY~yF   47 (191)
T 1sgm_A           27 TGLNQIVKESGAPKGSLYHFF   47 (191)
T ss_dssp             CCHHHHHHHHCCCSCHHHHST
T ss_pred             CCHHHHHHHHCCCHHHHHHHC
T ss_conf             669999998790988998885


No 355
>>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} (A:1-213)
Probab=33.33  E-value=30  Score=14.75  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=10.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |..+||+..|.|++++.++.
T Consensus        35 ti~~Ia~~agvs~~tiY~~F   54 (213)
T 2qib_A           35 SIDEIASAAGISRPLVYHYF   54 (213)
T ss_dssp             CHHHHHHHHTSCHHHHHHHC
T ss_pred             CHHHHHHHHCCCHHHHHHHC
T ss_conf             79999999794987999882


No 356
>>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} (A:)
Probab=33.33  E-value=28  Score=14.94  Aligned_cols=23  Identities=9%  Similarity=0.192  Sum_probs=9.4

Q ss_pred             CCCCCCCHHHHHH-HHHHHHHCCC
Q ss_conf             9987689889999-9998863100
Q gi|254780805|r   53 NPRNYFESEGLED-LCQSIKSHGI   75 (300)
Q Consensus        53 ~pR~~~~~~~l~e-La~SI~~~G~   75 (300)
                      +++.....+.|-+ -..-+.++|.
T Consensus        14 ~~~~~~~r~~Il~aA~~l~~~~G~   37 (243)
T 2g7l_A           14 PAKPALSRRWIVDTAVALXRAEGL   37 (243)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             988465999999999999997295


No 357
>>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} (A:1-73)
Probab=33.26  E-value=30  Score=14.74  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998521011104679999743378778656
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +...-+.+.+=.-|-.|.++|..+|.|+..|+...
T Consensus        21 ~~ti~iAR~VLV~G~~~~evA~~~Glsrq~V~~~V   55 (73)
T 2w7n_A           21 QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAV   55 (73)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf             89999999999688209999999673098999999


No 358
>>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:215-324)
Probab=33.13  E-value=30  Score=14.73  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=20.3

Q ss_pred             HHCCCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             101110467999974-33787786565
Q gi|254780805|r  149 SEYGYTQNDIGSIVG-KSRSHVANILR  174 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G-~s~s~V~~~Lr  174 (300)
                      +..++|-.+||+.|| ++.++|....+
T Consensus        56 ~~~~~sl~~Ig~~fg~rdhsTV~~a~~   82 (110)
T 1l8q_A           56 KVCSASLIEIARAFKRKDHTTVIHAIR   82 (110)
T ss_dssp             HHHCCCHHHHHHHSSCCCSTHHHHHHH
T ss_pred             HHHCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf             885789999999948997369999999


No 359
>>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} (A:)
Probab=33.05  E-value=22  Score=15.56  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656565435
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      +++.++|+.||.|..||.+..+. -||
T Consensus         3 vNk~qlA~~fgVS~~Ti~~W~~~-GlP   28 (68)
T 1j9i_A            3 VNKKQLADIFGASIRTIQNWQEQ-GMP   28 (68)
T ss_dssp             EEHHHHHHHTTCCHHHHHHHTTT-TCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHC-CCC
T ss_conf             57999999979888999999987-998


No 360
>>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* (A:145-203)
Probab=32.77  E-value=31  Score=14.69  Aligned_cols=35  Identities=26%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEE
Q ss_conf             68978999999999973987999717982289998
Q gi|254780805|r  245 EKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIK  279 (300)
Q Consensus       245 ~k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~  279 (300)
                      -...++.-|.+-|..+|+.+++|...+++-+|-|+
T Consensus        23 Ft~~Ev~~L~~~L~~kf~L~~si~~~~~qy~IyI~   57 (59)
T 3c0w_A           23 FTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYID   57 (59)
T ss_dssp             SCHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEEE
T ss_conf             99999999999999871947999965966899993


No 361
>>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* (A:)
Probab=32.45  E-value=31  Score=14.66  Aligned_cols=16  Identities=25%  Similarity=0.289  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             4679999743378778
Q gi|254780805|r  155 QNDIGSIVGKSRSHVA  170 (300)
Q Consensus       155 ~~~lA~~~G~s~s~V~  170 (300)
                      ..+||+..|.|+++|.
T Consensus        67 i~~IA~~agvs~~tiY   82 (256)
T 3g1l_A           67 VDDLAKGAGISRPTFY   82 (256)
T ss_dssp             HHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHCCCHHHHH
T ss_conf             9999999790998883


No 362
>>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} (A:)
Probab=32.05  E-value=26  Score=15.15  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.|   .|-.+||++.|.|++++.++..
T Consensus        14 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~   45 (189)
T 3geu_A           14 TLFSEKGYDGTTLDDIAKSVNIKKASLYYHFD   45 (189)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99997493637699999987909768877779


No 363
>>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A (A:)
Probab=32.01  E-value=32  Score=14.61  Aligned_cols=31  Identities=26%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|   .|-.+||++.|.|++++.++..
T Consensus        16 a~~l~~~~G~~~~t~~~Ia~~agvs~~tiY~~F~   49 (192)
T 2zcm_A           16 AITLFSEKGYDGTTLDDISKSVNIKKASLYYHYD   49 (192)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999987393506699999987909999967638


No 364
>>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:210-292)
Probab=32.00  E-value=32  Score=14.61  Aligned_cols=51  Identities=12%  Similarity=0.105  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCCEEECCC-------CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             68988999999988631001550462056-------54453335756777776421001
Q gi|254780805|r   57 YFESEGLEDLCQSIKSHGIIQPLIVRAID-------NGLYKIIAGERRFRAAKMASLSE  108 (300)
Q Consensus        57 ~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~-------~g~y~ii~G~rR~rAa~~~g~~~  108 (300)
                      .+++.++++|.+-+...|+ .|+++....       +|.|.+-.|...+...+.+|-..
T Consensus        18 ~~~pgDi~elK~i~~~fGl-~~~iLpD~S~slDgp~~~~~~~~~GGT~leei~~~g~a~   75 (83)
T 1qgu_B           18 ETYLGNFRVLKRMMEQMAV-PCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAI   75 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHTC-CEEESSCTTTTTSCCCSSCCCSCCCCBCHHHHHHGGGEE
T ss_pred             CCCCCCHHHHHHHHHHHCC-CEEECCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf             7883459999999998199-557657703214666566642048998899999876264


No 365
>>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, chloroplast, plastid; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* (A:93-310)
Probab=31.88  E-value=32  Score=14.60  Aligned_cols=31  Identities=29%  Similarity=0.375  Sum_probs=25.5

Q ss_pred             HCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             8235789998-768988999999988631001
Q gi|254780805|r   46 SIVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        46 ~i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      -+.+||.||- ..++.+.+++|++-.+++|..
T Consensus       110 i~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~  141 (218)
T 3ei9_A          110 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSI  141 (218)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEECCCCCHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf             99789875455454320023322333322125


No 366
>>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60)
Probab=31.70  E-value=32  Score=14.58  Aligned_cols=28  Identities=11%  Similarity=0.218  Sum_probs=21.6

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---1104679999743378778656
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.   +.|.++||+..|.|++++.++.
T Consensus        25 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F   55 (60)
T 3ljl_A           25 DQLLRLGYDKXSYTTLSQQTGVSRTGISHHF   55 (60)
T ss_dssp             HHHHHTHHHHCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             9998719020779999998688860898888


No 367
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=31.67  E-value=32  Score=14.58  Aligned_cols=23  Identities=9%  Similarity=0.024  Sum_probs=19.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             11104679999743378778656
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+.|..+||+.||.++..|.+.|
T Consensus        28 ~~~tA~~lAk~Lg~~Kk~VNr~L   50 (75)
T 1sfu_A           28 DYTTAISLSNRLKINKKKINQQL   50 (75)
T ss_dssp             CEECHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCHHHHHHHHH
T ss_conf             42219999988630087888999


No 368
>>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} (A:)
Probab=31.67  E-value=32  Score=14.58  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=13.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|..+||++.|.|++++.++.
T Consensus        45 ~ti~~Ia~~agvs~~tlY~yF   65 (216)
T 1t56_A           45 ISVDDLAKGAGISRPTFYFYF   65 (216)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHC
T ss_pred             CCHHHHHHHHCCCHHHHHCCC
T ss_conf             779999999685866660358


No 369
>>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} (A:)
Probab=31.53  E-value=32  Score=14.56  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---104679999743378778656
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      ..+++.+.|   .|-.+||+..|.|++++.++.
T Consensus        21 A~~l~~~~G~~~~t~~~IA~~aGvs~~~iy~yF   53 (211)
T 3bhq_A           21 ATAAFISKGYDGTSXEEIATKAGASKQTVYKHF   53 (211)
T ss_dssp             HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC
T ss_conf             999999849351779999998487901387538


No 370
>>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} (A:)
Probab=31.52  E-value=32  Score=14.56  Aligned_cols=22  Identities=5%  Similarity=0.125  Sum_probs=16.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.|..+||+..|.|+++|.++.
T Consensus        42 ~~si~~Ia~~agvs~~tiY~~F   63 (207)
T 3bjb_A           42 RVQXHEVAKRAGVAIGTLYRYF   63 (207)
T ss_dssp             GCCHHHHHHHHTCCHHHHHHHC
T ss_pred             CCCHHHHHHHHCCCCCHHHHHC
T ss_conf             0669999998683912064665


No 371
>>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} (A:)
Probab=31.48  E-value=32  Score=14.56  Aligned_cols=29  Identities=28%  Similarity=0.266  Sum_probs=18.2

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---104679999743378778656
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .+++.+.|   .|-.+||++.|.|++++.++.
T Consensus        24 ~~l~~~~G~~~~si~~IA~~agvs~~t~Y~yF   55 (199)
T 3crj_A           24 YRALREHGYADLTIQRIADEYGKSTAAVHYYY   55 (199)
T ss_dssp             HHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf             99999739251889999999791999995427


No 372
>>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=31.42  E-value=32  Score=14.55  Aligned_cols=18  Identities=33%  Similarity=0.447  Sum_probs=7.1

Q ss_pred             CHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVAN  171 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~  171 (300)
                      |-.+||+..|.|++++.+
T Consensus        33 ti~~IA~~agvs~~tiY~   50 (216)
T 3f0c_A           33 TXNEIASDVGXGKASLYY   50 (216)
T ss_dssp             CHHHHHHHHTCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHH
T ss_conf             899999987919878977


No 373
>>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A (A:)
Probab=31.34  E-value=32  Score=14.54  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=22.0

Q ss_pred             HHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011-1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG-YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.| .|..+||+..|.|++++.++..
T Consensus        23 a~~l~~~~G~~ti~~Ia~~agvs~~tiY~~F~   54 (190)
T 2v57_A           23 AMLVLADHPTAALGDIAAAAGVGRSTVHRYYP   54 (190)
T ss_dssp             HHHHHTTCTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999886997499999987849888977709


No 374
>>1m7y_A ACC synthase, 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, pyridoxal phosphate, lyase; HET: PPG; 1.60A {Malus x domestica} (A:109-303)
Probab=31.17  E-value=33  Score=14.52  Aligned_cols=30  Identities=30%  Similarity=0.420  Sum_probs=23.3

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||+||- ..++.+.++++++=.+++|+.
T Consensus        88 ~~~~p~NPtG~~~s~~~~~~i~~~~~~~~~~  118 (195)
T 1m7y_A           88 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIH  118 (195)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             9789999844120099999997522117879


No 375
>>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} (A:1-73)
Probab=31.06  E-value=33  Score=14.51  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=22.1

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.|   .|..+||+..|.|++++.++..
T Consensus        23 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~   54 (73)
T 2fq4_A           23 ELLLESGFKAVTVDKIAERAKVSKATIYKWWP   54 (73)
T ss_dssp             HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCC
T ss_conf             99998492407799999996928877510379


No 376
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:54-141)
Probab=30.89  E-value=33  Score=14.49  Aligned_cols=32  Identities=19%  Similarity=0.218  Sum_probs=23.6

Q ss_pred             HHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHH
Q ss_conf             999852101110467999974--33787786565
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVG--KSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G--~s~s~V~~~Lr  174 (300)
                      .+.++...--.|..+|+..+|  .|.++|.+.|.
T Consensus        15 ~i~~~~~~~~~t~~~l~~~lg~~vS~~Tv~r~L~   48 (88)
T 1u78_A           15 NVIRAASNSCKTARDIRNELQLSASKRTILNVIK   48 (88)
T ss_dssp             HHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             9999997624678899998187867999999999


No 377
>>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} (A:)
Probab=30.64  E-value=33  Score=14.47  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=11.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|-.+||++.|.|++++.++.
T Consensus        51 ~t~~~IA~~agvs~~t~Y~~F   71 (226)
T 2pz9_A           51 ARVDRIAKQARTSKERVYAYF   71 (226)
T ss_dssp             CCHHHHHHHTTSCHHHHHHHC
T ss_pred             CCHHHHHHHHCCCCCCHHHCC
T ss_conf             879999999489955524229


No 378
>>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} (A:)
Probab=30.63  E-value=33  Score=14.46  Aligned_cols=19  Identities=11%  Similarity=0.097  Sum_probs=10.1

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             0467999974337877865
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANI  172 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~  172 (300)
                      |..+||+..|.|++++.++
T Consensus        36 t~~~IA~~agvs~~tiY~~   54 (212)
T 3knw_A           36 GLQEILKTSGVPKGSFYHY   54 (212)
T ss_dssp             CHHHHHHHHTCCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHH
T ss_conf             8999999979099999888


No 379
>>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=30.49  E-value=33  Score=14.45  Aligned_cols=48  Identities=13%  Similarity=0.106  Sum_probs=36.1

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6654310221048999999985210111046799997433787786565
Q gi|254780805|r  126 IVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       126 l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |-.++.|..-+|-|...-+ .++..||..=..||..+|++..+|.++-+
T Consensus         3 L~p~~~k~~WT~eED~~L~-~~v~~~g~~W~~Ia~~~gRt~~q~r~R~~   50 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLL-HLAKLMPTQWRTIAPIIGRTAAQCLEHYE   50 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHH-HHHHHCTTCHHHHHHHHSSCHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHH-HHHHHCCCHHHHHHHCCCCCHHHHHHHHH
T ss_conf             9989889996889999999-99999197899804220788799999999


No 380
>>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} (A:1-88)
Probab=30.33  E-value=34  Score=14.43  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=25.0

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999985210111046799997433787786565654
Q gi|254780805|r  142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ..|..+.+ .| +-...|+.+|.|+++|++.++-++
T Consensus         9 ~~f~~v~~-~g-s~s~AA~~L~itq~avs~~i~~LE   42 (88)
T 3hhg_A            9 TVFVQVVE-SG-SFSRAAEQLAMANSAVSRIVKRLE   42 (88)
T ss_dssp             HHHHHHHH-SS-SHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-CC-CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999998-19-999999998879899999999999


No 381
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80)
Probab=30.19  E-value=34  Score=14.42  Aligned_cols=31  Identities=16%  Similarity=0.091  Sum_probs=23.2

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...++.+.|   .|..+||++.|.|++++.++..
T Consensus        20 a~~l~~~~G~~~~t~~~Ia~~~gvs~~~~Y~~F~   53 (80)
T 3b81_A           20 IWDIFIANGYENTTLAFIINKLGISKGALYHYFS   53 (80)
T ss_dssp             HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999997490407899999995989889987169


No 382
>>1wst_A MSAT, multiple substrate aminotransferase; alpha and beta; HET: PLP; 1.95A {Thermococcus profundus} (A:103-284)
Probab=30.03  E-value=34  Score=14.40  Aligned_cols=31  Identities=13%  Similarity=0.130  Sum_probs=26.1

Q ss_pred             HCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             8235789998-768988999999988631001
Q gi|254780805|r   46 SIVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        46 ~i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      .+.+||.||- ..++.+.++++++-.+++|+.
T Consensus        85 ii~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~  116 (182)
T 1wst_A           85 YTVSTFQNPAGVTMSVDRRKKLLELANEYDFL  116 (182)
T ss_dssp             EECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf             33245688878778899999999876505857


No 383
>>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} (A:1-61)
Probab=29.59  E-value=35  Score=14.35  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=29.1

Q ss_pred             CCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             104899999998521011---104679999743378778656565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYG---YTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +++-|++ .|+++...|+   +-..++|..+|.....+.+.||-+
T Consensus         1 ~s~~e~~-lWq~i~p~~~~~P~wVRDlA~~~g~~E~~~R~llrk~   44 (61)
T 2pjp_A            1 FSEEQQA-IWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQA   44 (61)
T ss_dssp             CCHHHHH-HHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCHHHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9989999-9999999974699989999999792999999999999


No 384
>>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:263-440)
Probab=29.58  E-value=13  Score=17.08  Aligned_cols=26  Identities=12%  Similarity=0.141  Sum_probs=20.3

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10111046799997433787786565
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++|..+||+.||++.|+|.+.++
T Consensus       122 ~~~~~sl~eIG~~fgrdhSTV~~a~~  147 (178)
T 2z4s_A          122 NYLKSSLRTIAEKFNRSHPVVVDSVK  147 (178)
T ss_dssp             --------------------------
T ss_pred             HHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             98578999999886988459999999


No 385
>>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* (A:1-67)
Probab=29.55  E-value=35  Score=14.35  Aligned_cols=32  Identities=3%  Similarity=0.052  Sum_probs=23.7

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---1046799997433787786565
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        14 aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~   48 (67)
T 2opt_A           14 TALGILDAEGLDALSMRRLAQELKTGHASLYAHVG   48 (67)
T ss_dssp             HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999997294525799999997929879999879


No 386
>>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} (A:89-277)
Probab=29.18  E-value=35  Score=14.31  Aligned_cols=30  Identities=23%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.++|.||. ..++.+.++++++-.+++|+.
T Consensus        85 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~  115 (189)
T 3jtx_A           85 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFI  115 (189)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHCCE
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf             9604556666556677899999765303513


No 387
>>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A (A:)
Probab=29.12  E-value=35  Score=14.30  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHHHHHC----CCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_conf             210489999999852101----110467999974-----33787786565654358999
Q gi|254780805|r  134 DLNPLEEALGYEQLISEY----GYTQNDIGSIVG-----KSRSHVANILRILKLPSSVR  183 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~----~~t~~~lA~~~G-----~s~s~V~~~LrLl~L~~~i~  183 (300)
                      +++.-..-..+++|++.-    -+|-++|++.+.     .+|.||++|-.-|..|+.-+
T Consensus        15 ~~S~~~ik~~I~~lI~~Edk~~PlSD~~I~~~L~~~Gi~IsRRTVaKYR~~L~Ip~s~~   73 (76)
T 2ahq_A           15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRE   73 (76)
T ss_dssp             SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHHHTC------
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHH
T ss_conf             01699999999999986377899649999999997699742031999998829996421


No 388
>>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold; 1.75A {Escherichia coli} (A:1-112)
Probab=28.96  E-value=36  Score=14.28  Aligned_cols=37  Identities=8%  Similarity=-0.042  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             899999998521011104679999743378778656565
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ++.-..|..+.+ .| +-...|+.+|.|+++|+++++-+
T Consensus        22 ~~~l~~~~~v~~-~g-S~t~AA~~l~is~~avs~~i~~L   58 (112)
T 1b9m_A           22 PRRISLLKHIAL-SG-SISQGAKDAGISYKSAWDAINEX   58 (112)
T ss_dssp             HHHHHHHHHHHH-HS-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             799999999999-69-99999999798999999999999


No 389
>>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; NP_940074.1, structural genomics, joint center for structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} (A:79-253)
Probab=28.83  E-value=36  Score=14.27  Aligned_cols=50  Identities=26%  Similarity=0.348  Sum_probs=32.6

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHH
Q ss_conf             235789998-7689889999999886310015504620565445333575677777
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAA  101 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa  101 (300)
                      +.++|.||- ..++.+.+++|.+-.+++|+.  +++   ++....++.++.+....
T Consensus        77 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~--ii~---De~y~~~~~~~~~~~~~  127 (175)
T 3fdb_A           77 LLCNPYNPLGXVFAPEWLNELCDLAHRYDAR--VLV---DEIHAPLVFDGQHTVAA  127 (175)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHTTCE--EEE---ECTTGGGBSSSCCCCGG
T ss_pred             CCCCCCCCCCEEEHHHHHHHHHCCCCCCCCC--CCC---CCCCCCCCCCCCCCCCC
T ss_conf             1223557443031254432332022334554--204---03444323443322111


No 390
>>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} (A:)
Probab=28.33  E-value=28  Score=14.91  Aligned_cols=32  Identities=9%  Similarity=0.007  Sum_probs=16.1

Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             776421001354333464112345566654310
Q gi|254780805|r  100 AAKMASLSEVPVIIRNVDNKSSLEIAIVENVQR  132 (300)
Q Consensus       100 Aa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R  132 (300)
                      -|+.+|.. -..+.+-..+.+.+..++++....
T Consensus        61 IA~~agvs-~~t~Y~~F~sK~~L~~a~~~~~~~   92 (237)
T 3kkd_A           61 VAAEAQVP-LSATTYYFKDIDDLITDTFALFVE   92 (237)
T ss_dssp             HHHHHTSC-TTTC-----CHHHHHHHHHHHHHH
T ss_pred             HHHHHCCC-HHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             99998929-899988788999999999999999


No 391
>>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} (A:1-10,A:102-163)
Probab=28.10  E-value=37  Score=14.19  Aligned_cols=38  Identities=8%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             HCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf             3987999717982289998589899999999837564569
Q gi|254780805|r  261 VGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY  300 (300)
Q Consensus       261 lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~~~~~  300 (300)
                      .+.||+..-.+.  .|.+.-++.|+|...+..|++.||++
T Consensus        26 ~klKVqa~IQGd--~vRVtgKkrDDLQ~vIallk~~d~~~   63 (72)
T 1in0_A           26 SKIKVQTQIQGE--QVRVTGKSRDDLQAVIQLVKSAELGQ   63 (72)
T ss_dssp             HTCSEEEEEETT--EEEEEESCHHHHHHHHHHHHHSCCSS
T ss_pred             CCCCCEEEECCC--EEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf             387405897583--78873688789999999987136799


No 392
>>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} (A:47-304)
Probab=27.86  E-value=37  Score=14.16  Aligned_cols=30  Identities=30%  Similarity=0.494  Sum_probs=19.9

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||+||- ..++++.+++|++-.+++|+.
T Consensus       136 ~~~~p~NPTG~~~s~~~~~~l~~~~~~~~~~  166 (258)
T 1bw0_A          136 IVTNPSNPCGSNFSRKHVEDIVRLAEELRLP  166 (258)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCC
T ss_pred             EECCCCCCCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf             3213333333320267776642032246746


No 393
>>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} (A:1-79)
Probab=27.58  E-value=38  Score=14.13  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        17 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~   50 (79)
T 3dpj_A           17 ADELFYRQGFAQTSFVDISAAVGISRGNFYYHFK   50 (79)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             9999997493517799999985859533778559


No 394
>>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} (A:1-66)
Probab=27.45  E-value=38  Score=14.11  Aligned_cols=28  Identities=18%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---1104679999743378778656
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .++.+.   +.|..+||+..|.|++++.++.
T Consensus        22 ~l~~~~G~~~~s~~~Ia~~~gvs~~~iY~~F   52 (66)
T 2ras_A           22 AIVEERGGAGLTLSELAARAGISQANLSRYF   52 (66)
T ss_dssp             HHHHHHTSSCCCHHHHHHHHTSCHHHHTTTC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999759020679999998684875687860


No 395
>>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:74-122)
Probab=27.26  E-value=38  Score=14.09  Aligned_cols=24  Identities=8%  Similarity=0.140  Sum_probs=19.6

Q ss_pred             EEEEEEECCHHHHHHHHHHHCCCC
Q ss_conf             289998589899999999837564
Q gi|254780805|r  274 GQFCIKYETNEQLKIICSLLGEND  297 (300)
Q Consensus       274 GkI~I~f~s~eeLe~Il~kL~~~~  297 (300)
                      -.|.|.+.+.+|.+++.++|..+.
T Consensus         5 ~sl~i~~~~~eE~~~~f~~Ls~gG   28 (49)
T 1u69_A            5 FSFQVATDDQAETDRLWNAIVDNG   28 (49)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             699997798899999999986566


No 396
>>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} (A:92-298)
Probab=27.12  E-value=38  Score=14.08  Aligned_cols=30  Identities=27%  Similarity=0.265  Sum_probs=23.9

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||.||- ..++.+.++++++-.+++|+.
T Consensus        90 ~~~~p~NPTG~~~s~~~~~~l~~~~~~~~~~  120 (207)
T 1yaa_A           90 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHI  120 (207)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf             9437899837648999999999998645914


No 397
>>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} (A:)
Probab=27.02  E-value=38  Score=14.07  Aligned_cols=20  Identities=15%  Similarity=0.217  Sum_probs=9.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |-.+||++.|.|++++.++.
T Consensus        31 ti~~Ia~~agvs~~t~Y~~F   50 (203)
T 2np5_A           31 SVREVAKRAGVSIGAVQHHF   50 (203)
T ss_dssp             CHHHHHHHHTCCHHHHHHHC
T ss_pred             CHHHHHHHHCCCCHHHCCCC
T ss_conf             79999998689963220068


No 398
>>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B (A:)
Probab=27.00  E-value=38  Score=14.06  Aligned_cols=26  Identities=15%  Similarity=0.281  Sum_probs=19.2

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...++|  |...|+.||..++.|+..||
T Consensus        10 yv~~~G--Q~k~A~~lGv~Q~AIskAir   35 (66)
T 2ovg_A           10 YAMRFG--QTKTAKDLGVYPSSINQAIH   35 (66)
T ss_dssp             HHHHHC--HHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHC--HHHHHHHCCCCHHHHHHHHH
T ss_conf             999976--59899983977899999996


No 399
>>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157)
Probab=26.40  E-value=22  Score=15.56  Aligned_cols=74  Identities=15%  Similarity=0.180  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHCC
Q ss_conf             02210489999999852---1011104679999743378778656565435899998764210----1677777-64010
Q gi|254780805|r  132 RKDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHART-LVSTS  203 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar~-Ll~~~  203 (300)
                      ..+|++.+-.. +.-+.   +..++|+.+||+++|.++++|++.+         ..++..|-|    +....|. ++.+.
T Consensus        64 ~~~l~~~~~~v-L~~l~~~~~~~~~t~~~la~~l~~~~~~vs~~i---------~~L~~~Gli~r~~~~~DrR~~~i~lT  133 (157)
T 2fbk_A           64 ASGLNAAGWDL-LLTLYRSAPPEGLRPTELSALAAISGPSTSNRI---------VRLLEKGLIERREDERDRRSASIRLT  133 (157)
T ss_dssp             TTTCCHHHHHH-HHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHH---------HHHHHHTSEECCC-------CCBEEC
T ss_pred             HCCCCHHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEEECCCCCCCHHHHHCC
T ss_conf             86989999999-999986289999699999999786875799999---------99986677123105654302454227


Q ss_pred             H-HHHHHHHHHHC
Q ss_conf             0-46899997422
Q gi|254780805|r  204 D-PLSLAQVIVSK  215 (300)
Q Consensus       204 ~-~~~la~~Ii~~  215 (300)
                      + ..+++.++...
T Consensus       134 ~~G~~~~~~~~~~  146 (157)
T 2fbk_A          134 PQGRALVTHLLPA  146 (157)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8799999999999


No 400
>>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} (A:1-68)
Probab=26.36  E-value=39  Score=13.99  Aligned_cols=30  Identities=17%  Similarity=0.278  Sum_probs=22.5

Q ss_pred             HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9852101---11046799997433787786565
Q gi|254780805|r  145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.   +.|-.+||+..|.|++++.++..
T Consensus        14 ~~l~~~~G~~~~t~~~Ia~~~gvs~~~~y~~F~   46 (68)
T 2vpr_A           14 LILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVK   46 (68)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999997393517899999997919879988889


No 401
>>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S lyase; YP_813084.1, structural genomics, joint center for structural genomics; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} (A:83-268)
Probab=26.26  E-value=40  Score=13.98  Aligned_cols=30  Identities=23%  Similarity=0.499  Sum_probs=25.3

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||.||- ..++.+.+.+|++-.+.+|..
T Consensus        83 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~  113 (186)
T 3dzz_A           83 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVL  113 (186)
T ss_dssp             EEESSBTTTTBCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHCCEE
T ss_conf             9806765201231188999999985414111


No 402
>>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP- binding, cell membrane; HET: CIT; 2.00A {Archaeoglobus fulgidus} (A:)
Probab=25.96  E-value=40  Score=13.94  Aligned_cols=46  Identities=7%  Similarity=0.004  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             899999999997398799971798228999858989999999983756
Q gi|254780805|r  249 YLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       249 ~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      ....+++.|+..--..++++...  +++.|.|.+.+++...++.+|..
T Consensus        19 C~~~Ie~~l~~~GV~~~~V~l~~--~~~~v~~~~~~~i~~~i~~~Gy~   64 (73)
T 3fry_A           19 CVARVKKALEEAGAKVEKVDLNE--AVVAGNKEDVDKYIKAVEAAGYQ   64 (73)
T ss_dssp             GHHHHHHHHHHTTCEEEEECSSE--EEEEEEGGGHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHCCCCCEEEEEECCC--CEEEECCCCHHHHHHHHHHCCCC
T ss_conf             99999998625894599998882--68996689999999999962997


No 403
>>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} (A:)
Probab=25.11  E-value=42  Score=13.84  Aligned_cols=20  Identities=10%  Similarity=0.233  Sum_probs=8.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |..+||++.|.|++++.++.
T Consensus        51 si~~IA~~aGvs~~tiY~~F   70 (241)
T 2hxi_A           51 SVRKLAASLGTDSSSLYRHF   70 (241)
T ss_dssp             CHHHHHHHTTSCHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHC
T ss_conf             79999999791987999997


No 404
>>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis} (A:1-89)
Probab=24.83  E-value=42  Score=13.81  Aligned_cols=34  Identities=12%  Similarity=0.162  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      -..|..+.+. | +-...|+.+|.|++.|++.++-+
T Consensus        11 l~~f~~v~~~-g-s~t~AA~~l~isq~avS~~i~~L   44 (89)
T 3isp_A           11 LAALAAVVEL-G-SFDAAAERLHVTPSAVSQRIKSL   44 (89)
T ss_dssp             HHHHHHHHHH-T-CHHHHHTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999980-9-99999999896989999999999


No 405
>>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043} (A:1-70)
Probab=24.72  E-value=42  Score=13.80  Aligned_cols=21  Identities=5%  Similarity=0.192  Sum_probs=9.4

Q ss_pred             EEEEEEECCHHHHHHHHHHHC
Q ss_conf             289998589899999999837
Q gi|254780805|r  274 GQFCIKYETNEQLKIICSLLG  294 (300)
Q Consensus       274 GkI~I~f~s~eeLe~Il~kL~  294 (300)
                      ..+++++.|-||+-.|+++++
T Consensus        18 ~~L~Fe~~nHDDif~Ivekv~   38 (70)
T 3cjl_A           18 RTLSFEFSLHDDLFKLLEKVD   38 (70)
T ss_dssp             CEEEEEEEESSCHHHHHHHHT
T ss_pred             CCEEEEECCHHHHHHHHHHHH
T ss_conf             863676157789999999987


No 406
>>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} (A:1-167,A:265-324)
Probab=24.41  E-value=18  Score=16.12  Aligned_cols=31  Identities=10%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565654
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+.+ .|.+-...|+.++.|++.||+.++.|+
T Consensus        11 ev~~-~~~sis~AA~~L~iSQpaVSk~Ik~LE   41 (227)
T 1al3_A           11 EVVN-HNLNVSSTAEGLYTSQPGISKQVRMLE   41 (227)
T ss_dssp             --------------------------------
T ss_pred             HHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9998-699899999998888899999999999


No 407
>>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:)
Probab=24.23  E-value=43  Score=13.74  Aligned_cols=32  Identities=9%  Similarity=0.047  Sum_probs=23.4

Q ss_pred             HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011-1046799997433787786565
Q gi|254780805|r  143 GYEQLISEYG-YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++.|.+... ++..+||+.+|.++..|++.|.
T Consensus        15 IL~~L~e~g~p~~a~~Iae~lgv~kkeV~k~L~   47 (67)
T 2heo_A           15 ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLY   47 (67)
T ss_dssp             HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999768968799999997888899999999


No 408
>>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} (A:)
Probab=24.16  E-value=28  Score=14.92  Aligned_cols=20  Identities=25%  Similarity=0.282  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~L  173 (300)
                      |-.+||++.|.|++++.++.
T Consensus        35 ti~~IA~~agvs~~tiY~yF   54 (210)
T 2qco_A           35 SLSDIIKLSGGSYSNIYDGF   54 (210)
T ss_dssp             CHHHHHHHHCTTCTTCSSST
T ss_pred             CHHHHHHHCCCCCCHHHHHC
T ss_conf             89999987299974036529


No 409
>>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} (A:)
Probab=24.07  E-value=43  Score=13.72  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=25.7

Q ss_pred             HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998521011-----1046799997433787786565654
Q gi|254780805|r  142 LGYEQLISEYG-----YTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       142 ~~~~~l~~~~~-----~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+++...++++     +....+|+++|..||.|-|.||=+.
T Consensus        28 eAi~hIf~eL~g~EG~lvASkIADrvgITRSVIVNALRKlE   68 (102)
T 2b0l_A           28 EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE   68 (102)
T ss_dssp             HHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999999728965435308666762972899999998764


No 410
>>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii} (A:)
Probab=23.83  E-value=29  Score=14.87  Aligned_cols=26  Identities=27%  Similarity=0.203  Sum_probs=9.2

Q ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             764210013543334641123455666
Q gi|254780805|r  101 AKMASLSEVPVIIRNVDNKSSLEIAIV  127 (300)
Q Consensus       101 a~~~g~~~ip~iv~~~~d~~~~~~~l~  127 (300)
                      |+.+|.. ...+-.-.++.+.+..+++
T Consensus        43 a~~agvs-~~tiY~~F~sK~~L~~~~~   68 (211)
T 3him_A           43 AASLDMS-PGAVYPHYKTKESLLYAIS   68 (211)
T ss_dssp             HHHTTCC-TTSSTTTCSSHHHHHHHHH
T ss_pred             HHHHCCC-CCCHHCCCCCHHHHHHHHH
T ss_conf             9996899-6522223898999999999


No 411
>>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} (A:42-272)
Probab=23.63  E-value=44  Score=13.67  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCC
Q ss_conf             235789998-76898899999998863100
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGI   75 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~   75 (300)
                      +.+||+||- ..++.+.++++++...+++.
T Consensus       121 i~~nP~NPtG~~~~~~~~~~i~~~a~~~~~  150 (231)
T 3euc_A          121 YLAYPNNPTGNLFDAADXEAIVRAAQGSVC  150 (231)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHTBTTSC
T ss_pred             CCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
T ss_conf             245555454644688885201112322323


No 412
>>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, lyase; HET: PLP AVG; 2.70A {Solanum lycopersicum} (A:106-298)
Probab=23.58  E-value=44  Score=13.66  Aligned_cols=27  Identities=26%  Similarity=0.491  Sum_probs=11.7

Q ss_pred             CCCCCCC-CCCCHHHHHHHHHHHHHCCC
Q ss_conf             5789998-76898899999998863100
Q gi|254780805|r   49 PNPHNPR-NYFESEGLEDLCQSIKSHGI   75 (300)
Q Consensus        49 ~~p~~pR-~~~~~~~l~eLa~SI~~~G~   75 (300)
                      +||+||- ..++.+.+++|.+--+++|+
T Consensus        90 ~~p~nptG~~~~~~~~~~l~~~a~~~~~  117 (193)
T 1iay_A           90 TNPSNPLGTTLDKDTLKSVLSFTNQHNI  117 (193)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHCCCCCEE
T ss_conf             7899998602416889998732455169


No 413
>>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} (A:)
Probab=23.33  E-value=45  Score=13.63  Aligned_cols=25  Identities=16%  Similarity=0.101  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      -++-++||+.+|.+++++.+.|+.|
T Consensus        30 ~~s~~~IA~~~~i~~~~l~kil~~L   54 (149)
T 1ylf_A           30 LCTSDYXAESVNTNPVVIRKIXSYL   54 (149)
T ss_dssp             GCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             7759999999794999999999999


No 414
>>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase, cobalamin, lyase; 1.46A {Salmonella enterica} (A:36-260)
Probab=23.03  E-value=45  Score=13.59  Aligned_cols=30  Identities=27%  Similarity=0.283  Sum_probs=21.7

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.+||+||- ..++.+.+.++++-.++++..
T Consensus       116 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~  146 (225)
T 1lc5_A          116 FLCTPNNPTGLLPERPLLQAIADRCKSLNIN  146 (225)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             9838989866434477877778776315206


No 415
>>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} (A:17-95)
Probab=22.85  E-value=46  Score=13.57  Aligned_cols=33  Identities=9%  Similarity=0.070  Sum_probs=24.9

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      |..| .+...|.++||.++|.+...+.+.|+.+.
T Consensus        16 fd~L-~~~p~t~~~La~~~g~~~~~~~~lLr~L~   48 (79)
T 2r3s_A           16 FTAI-SQGIESSQSLAQKCQTSERGXRXLCDYLV   48 (79)
T ss_dssp             HHHH-TTSEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHH-HCCCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             8998-47999999999872989899999999999


No 416
>>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:)
Probab=22.44  E-value=41  Score=13.85  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=20.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             99852101110467999974337877
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHV  169 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V  169 (300)
                      +.+|+.+ ||+++++-+.+|.++..|
T Consensus        11 I~~Lm~~-GYs~~~V~rAL~Ia~Nnv   35 (56)
T 2juj_A           11 IENLMSQ-GYSYQDIQKALVIAQNNI   35 (56)
T ss_dssp             HHHHHTT-TCCHHHHHHHHHHTTTCS
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHCCH
T ss_conf             9999986-665999999999987119


No 417
>>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:)
Probab=21.72  E-value=48  Score=13.42  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             998521011104679999743378778
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVA  170 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~  170 (300)
                      +.+|+.+ ||+++++-+.+|..+..|.
T Consensus         8 I~~Lm~~-GYs~~~v~rAL~Ia~Nnie   33 (46)
T 2oo9_A            8 IENLXSQ-GYSYQDIQKALVIAQNNIE   33 (46)
T ss_dssp             HHHHHHT-TBCHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHCCHH
T ss_conf             9999986-7769999999999871099


No 418
>>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} (A:1-94)
Probab=21.39  E-value=49  Score=13.38  Aligned_cols=33  Identities=21%  Similarity=0.192  Sum_probs=24.1

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998521011104679999743378778656565
Q gi|254780805|r  142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ..|..+.+. | +-...|+.+|.|++.|++.++-+
T Consensus        16 ~~f~av~~~-g-s~t~AA~~L~isq~avS~~i~~L   48 (94)
T 2esn_A           16 LVFDALYRH-R-NVGTAASELAISASAFSHALGRL   48 (94)
T ss_dssp             HHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999980-9-99999999787989999999999


No 419
>>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} (A:55-290)
Probab=21.31  E-value=49  Score=13.37  Aligned_cols=28  Identities=25%  Similarity=0.520  Sum_probs=15.7

Q ss_pred             CCCCCCCC-CCCCHHHHHHHHHHHHHCCC
Q ss_conf             35789998-76898899999998863100
Q gi|254780805|r   48 VPNPHNPR-NYFESEGLEDLCQSIKSHGI   75 (300)
Q Consensus        48 ~~~p~~pR-~~~~~~~l~eLa~SI~~~G~   75 (300)
                      .+||+||- ..++++.++++++-.+++|+
T Consensus       126 ~~~p~NPtG~~~~~~~~~~i~~~~~~~~~  154 (236)
T 2gb3_A          126 LSNPCNPTGVVYGKDEXRYLVEIAERHGL  154 (236)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHCCCE
T ss_conf             41543201122019999999976511998


No 420
>>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} (A:109-506)
Probab=21.06  E-value=17  Score=16.35  Aligned_cols=10  Identities=20%  Similarity=0.302  Sum_probs=3.8

Q ss_pred             CHHHHHHHHH
Q ss_conf             7789999997
Q gi|254780805|r  218 SVRDTEELVQ  227 (300)
Q Consensus       218 SVRe~E~lVk  227 (300)
                      ++|..+.+++
T Consensus       340 ~~r~~~~~~~  349 (398)
T 3f8t_A          340 TRRQLESVER  349 (398)
T ss_dssp             CHHHHHHHHH
T ss_pred             EHHHHHHHHH
T ss_conf             0899999999


No 421
>>2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8} (A:85-262)
Probab=20.90  E-value=50  Score=13.32  Aligned_cols=30  Identities=20%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.++|+||- ..++.+.+.++++-.+++|+.
T Consensus        79 i~~~p~nPtG~~~~~~~~~~i~~~~~~~~~~  109 (178)
T 2dou_A           79 LLNYPNNPTGAVADWGYFEEALGLARKHGLW  109 (178)
T ss_dssp             EECSSCTTTCCCCCHHHHHHHHHHHHHTTCE
T ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHCEEE
T ss_conf             8414456512446588899999987644278


No 422
>>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} (A:1-50)
Probab=20.55  E-value=51  Score=13.27  Aligned_cols=28  Identities=14%  Similarity=0.164  Sum_probs=21.1

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---1104679999743378778656
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +++.+.   +.|..+||+..|.|++++.++.
T Consensus        19 ~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F   49 (50)
T 2o7t_A           19 NLYRTHHHDSLTXENIAEQAGVGVATLYRNF   49 (50)
T ss_dssp             HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCCHHCCC
T ss_conf             9999859140779999998588944212279


No 423
>>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} (A:99-287)
Probab=20.26  E-value=52  Score=13.23  Aligned_cols=30  Identities=27%  Similarity=0.510  Sum_probs=22.9

Q ss_pred             CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC
Q ss_conf             235789998-768988999999988631001
Q gi|254780805|r   47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII   76 (300)
Q Consensus        47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l   76 (300)
                      +.++|.||- ..++.+.+.++++--+++|+.
T Consensus        89 ~~~~p~NptG~~~~~~~~~~i~~~a~~~~i~  119 (189)
T 1yiz_A           89 IINTPHNPLGKVMDRAELEVVANLCKKWNVL  119 (189)
T ss_dssp             EEESSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             1165022454331388888887640201335


No 424
>>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli} (A:1-87)
Probab=20.24  E-value=51  Score=13.28  Aligned_cols=46  Identities=11%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCH--H-HHHHHHHH
Q ss_conf             89789999999999739879997179822899985898--9-99999998
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETN--E-QLKIICSL  292 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~--e-eLe~Il~k  292 (300)
                      ++..+.+.=+.+++..|..+-++.. -+|+|++++.+.  + -|+.|+.-
T Consensus        21 ~~~~l~~vl~~ia~~~g~~iv~~~~-v~~~vs~~~~~~~~~~~l~~il~~   69 (87)
T 3gr5_A           21 KSSPVRAILNDFAANYSIPVFISSS-VNDDFSGEIKNEKPVKVLEKLSKL   69 (87)
T ss_dssp             EEEEHHHHHHHHHHHTTCCEEECTT-CCCEEEEEEEEECHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCEEEECCC-CCCCEEEECCCCCHHHHHHHHHHH
T ss_conf             6998999999999986974995687-665201211778999999999986


No 425
>>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis} (A:)
Probab=20.05  E-value=52  Score=13.20  Aligned_cols=50  Identities=8%  Similarity=0.191  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCCC
Q ss_conf             899999999997398799971798228999-858989999999983756456
Q gi|254780805|r  249 YLTDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDFE  299 (300)
Q Consensus       249 ~i~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~~  299 (300)
                      ....+..+| ...|.++.|..++.-.+|.+ .|.+.++.+..+.+|+...++
T Consensus        22 ~A~~~~~~L-~~~g~~~~i~~~~~~yrV~vGpf~~~~~A~~~~~~lk~~g~~   72 (79)
T 1x60_A           22 NADSLASNA-EAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD   72 (79)
T ss_dssp             HHHHHHHHH-HHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHH-HHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             999999999-865995699754863899988869999999999999983997


Done!