Query gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 300 No_of_seqs 186 out of 3259 Neff 6.5 Searched_HMMs 33803 Date Wed Jun 1 13:34:37 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780805.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1yzs_A Sulfiredoxin; PARB dom 99.9 4.3E-23 1.3E-27 168.0 5.8 113 6-131 2-121 (121) 2 >1vz0_A PARB, chromosome parti 99.8 3.9E-22 1.1E-26 161.8 2.2 97 5-116 3-99 (99) 3 >1vk1_A Conserved hypothetical 99.8 1.1E-20 3.2E-25 152.5 2.9 87 33-119 7-95 (108) 4 >1xw3_A Sulfiredoxin; retrored 99.8 3.6E-20 1.1E-24 149.2 5.6 97 32-131 7-110 (110) 5 >1r71_A Transcriptional repres 99.7 2.3E-18 6.7E-23 137.6 5.2 76 97-176 1-76 (76) 6 >1zx4_A P1 PARB, plasmid parti 99.6 1.2E-16 3.6E-21 126.5 5.0 75 129-204 1-77 (81) 7 >1vz0_A PARB, chromosome parti 99.5 7.3E-14 2.1E-18 108.7 5.6 59 117-176 1-59 (59) 8 >1vz0_A PARB, chromosome parti 99.4 1.8E-13 5.3E-18 106.1 3.6 62 177-238 1-64 (72) 9 >2hwj_A AGR_C_2837P, hypotheti 97.0 0.0012 3.6E-08 43.0 4.8 82 36-119 6-94 (205) 10 >2h8r_A Hepatocyte nuclear fac 94.8 0.057 1.7E-06 32.2 5.1 55 118-174 12-66 (122) 11 >1ic8_A Hepatocyte nuclear fac 94.7 0.058 1.7E-06 32.2 4.9 55 118-174 11-65 (85) 12 >2o38_A Hypothetical protein; 94.2 0.059 1.7E-06 32.1 4.0 53 137-189 38-92 (120) 13 >2a6c_A Helix-turn-helix motif 94.1 0.065 1.9E-06 31.9 4.0 37 138-174 17-53 (83) 14 >3ivp_A Putative transposon-re 94.0 0.074 2.2E-06 31.5 4.3 44 134-177 7-50 (73) 15 >2kpj_A SOS-response transcrip 94.0 0.069 2E-06 31.7 4.0 42 138-179 8-49 (94) 16 >2fjr_A Repressor protein CI; 93.8 0.071 2.1E-06 31.6 3.9 48 139-186 6-54 (70) 17 >2w48_A Sorbitol operon regula 93.7 0.088 2.6E-06 31.0 4.2 26 151-176 20-45 (54) 18 >3g5g_A Regulatory protein; tr 93.7 0.062 1.8E-06 32.0 3.4 39 139-177 28-66 (99) 19 >2r1j_L Repressor protein C2; 93.6 0.042 1.2E-06 33.1 2.4 39 138-176 4-42 (68) 20 >3f52_A CLP gene regulator (CL 93.5 0.086 2.6E-06 31.1 3.8 51 137-187 26-77 (117) 21 >2p8t_A Hypothetical protein P 93.4 0.12 3.5E-06 30.2 4.3 33 143-176 22-54 (200) 22 >1b0n_A Protein (SINR protein) 93.4 0.079 2.3E-06 31.3 3.4 34 142-175 4-37 (65) 23 >2ef8_A C.ECOT38IS, putative t 93.3 0.08 2.4E-06 31.3 3.4 36 140-175 11-46 (84) 24 >1lmb_3 Protein (lambda repres 93.3 0.079 2.3E-06 31.3 3.3 36 140-175 18-53 (92) 25 >1r69_A Repressor protein CI; 93.2 0.089 2.6E-06 31.0 3.5 34 141-174 3-36 (69) 26 >1y9q_A Transcriptional regula 93.2 0.085 2.5E-06 31.1 3.4 39 139-177 11-49 (76) 27 >3fmy_A HTH-type transcription 93.1 0.067 2E-06 31.8 2.8 39 141-179 13-51 (73) 28 >3eus_A DNA-binding protein; s 93.1 0.082 2.4E-06 31.2 3.2 34 141-174 16-49 (86) 29 >2wiu_B HTH-type transcription 93.1 0.14 4.2E-06 29.7 4.4 44 136-179 9-52 (88) 30 >1x57_A Endothelial differenti 93.0 0.12 3.6E-06 30.1 4.0 40 137-176 11-50 (91) 31 >3kz3_A Repressor protein CI; 92.9 0.086 2.5E-06 31.1 3.1 38 140-177 13-50 (80) 32 >3cec_A Putative antidote prot 92.8 0.1 3E-06 30.6 3.3 39 136-174 15-53 (56) 33 >2ict_A Antitoxin HIGA; helix- 92.7 0.11 3.3E-06 30.4 3.4 37 137-173 6-42 (46) 34 >3b7h_A Prophage LP1 protein 1 92.6 0.11 3.2E-06 30.4 3.3 34 141-174 9-42 (78) 35 >3f6w_A XRE-family like protei 92.6 0.11 3.4E-06 30.3 3.3 38 139-176 14-51 (83) 36 >1zug_A Phage 434 CRO protein; 92.5 0.084 2.5E-06 31.1 2.6 46 141-186 5-50 (71) 37 >3clc_A Regulatory protein; pr 92.4 0.13 3.8E-06 30.0 3.5 37 139-175 11-47 (82) 38 >1y7y_A C.AHDI; helix-turn-hel 92.4 0.13 3.9E-06 29.9 3.4 36 139-174 13-48 (74) 39 >2eby_A Putative HTH-type tran 92.4 0.13 3.8E-06 29.9 3.4 33 143-175 15-47 (96) 40 >2jvl_A TRMBF1; coactivator, h 92.3 0.14 4.2E-06 29.7 3.6 34 144-177 41-74 (107) 41 >1adr_A P22 C2 repressor; tran 92.3 0.088 2.6E-06 31.0 2.5 40 140-179 6-45 (76) 42 >2b5a_A C.BCLI; helix-turn-hel 92.2 0.14 4.1E-06 29.7 3.4 35 140-174 11-45 (77) 43 >1utx_A CYLR2; DNA-binding pro 92.1 0.11 3.3E-06 30.4 2.8 34 144-177 6-39 (66) 44 >3gn5_A HTH-type transcription 91.9 0.12 3.6E-06 30.1 2.8 39 141-179 2-40 (62) 45 >2ppx_A AGR_C_3184P, uncharact 91.8 0.13 3.7E-06 30.0 2.8 31 142-172 33-63 (68) 46 >1jko_C HIN recombinase, DNA-i 91.8 0.093 2.7E-06 30.9 2.1 38 135-174 6-43 (52) 47 >2ewt_A BLDD, putative DNA-bin 91.6 0.18 5.2E-06 29.1 3.4 39 139-177 8-48 (71) 48 >3fym_A Putative uncharacteriz 91.5 0.17 4.9E-06 29.3 3.2 34 141-174 5-38 (130) 49 >3bs3_A Putative DNA-binding p 91.4 0.16 4.7E-06 29.4 2.9 35 143-177 14-48 (76) 50 >2p5t_A Putative transcription 90.8 0.051 1.5E-06 32.5 0.0 39 141-179 3-41 (158) 51 >2ofy_A Putative XRE-family tr 90.7 0.32 9.6E-06 27.4 4.0 39 149-187 24-64 (86) 52 >3hef_A Gene 1 protein; bacter 90.5 0.37 1.1E-05 27.0 4.2 119 138-287 18-141 (143) 53 >1s7o_A Hypothetical UPF0122 p 89.5 1.1 3.1E-05 24.1 5.8 40 133-174 21-60 (73) 54 >2o0m_A Transcriptional regula 88.9 0.091 2.7E-06 30.9 0.0 23 152-174 34-56 (345) 55 >1ntc_A Protein (nitrogen regu 88.8 0.41 1.2E-05 26.8 3.3 34 143-176 55-88 (91) 56 >1u78_A TC3 transposase, trans 88.5 0.61 1.8E-05 25.6 4.0 39 134-174 6-44 (53) 57 >1tty_A Sigma-A, RNA polymeras 86.8 0.99 2.9E-05 24.3 4.3 42 133-174 17-60 (87) 58 >1hlv_A CENP-B, major centrome 86.7 1 3E-05 24.2 4.3 55 132-189 5-59 (67) 59 >1or7_A Sigma-24, RNA polymera 86.1 0.87 2.6E-05 24.6 3.7 40 134-175 24-63 (78) 60 >1u2w_A CADC repressor, cadmiu 86.1 0.73 2.2E-05 25.1 3.3 35 143-177 20-54 (95) 61 >1umq_A Photosynthetic apparat 85.9 0.92 2.7E-05 24.5 3.7 40 135-175 38-77 (81) 62 >1r1t_A Transcriptional repres 85.9 0.97 2.9E-05 24.3 3.8 31 147-177 10-40 (78) 63 >2q0o_A Probable transcription 85.5 1.2 3.6E-05 23.7 4.2 40 132-174 1-40 (64) 64 >2ia0_A Putative HTH-type tran 85.2 1.4 4.1E-05 23.3 4.4 42 133-175 13-54 (66) 65 >1uxc_A FRUR (1-57), fructose 85.2 0.83 2.4E-05 24.8 3.2 36 153-188 1-40 (65) 66 >1xsv_A Hypothetical UPF0122 p 85.0 1.2 3.7E-05 23.6 4.0 41 133-175 24-64 (76) 67 >2w25_A Probable transcription 84.8 1.3 3.8E-05 23.5 4.1 40 134-174 4-43 (56) 68 >1rp3_A RNA polymerase sigma f 84.7 1.3 3.8E-05 23.5 4.0 40 133-174 97-136 (150) 69 >1ku3_A Sigma factor SIGA; hel 84.4 1.4 4.3E-05 23.2 4.2 42 133-174 9-52 (73) 70 >2zkz_A Transcriptional repres 84.3 0.93 2.7E-05 24.4 3.2 35 144-178 33-67 (99) 71 >1bia_A BIRA bifunctional prot 84.3 1.3 3.8E-05 23.5 3.9 35 143-177 9-44 (64) 72 >2d1h_A ST1889, 109AA long hyp 84.2 1.6 4.9E-05 22.9 4.4 50 133-191 17-66 (109) 73 >1eto_A FIS, factor for invers 84.1 1.2 3.5E-05 23.8 3.6 43 135-178 10-52 (53) 74 >1tlh_B Sigma-70, RNA polymera 84.1 1.8 5.3E-05 22.6 4.5 42 133-174 17-60 (81) 75 >2d5v_A Hepatocyte nuclear fac 83.9 1.6 4.7E-05 23.0 4.2 42 133-174 2-44 (91) 76 >3c3w_A Two component transcri 83.9 1.5 4.5E-05 23.1 4.1 37 135-174 2-38 (47) 77 >3cuo_A Uncharacterized HTH-ty 83.7 1.4 4.1E-05 23.3 3.8 35 143-177 20-54 (90) 78 >1gdt_A GD resolvase, protein 83.6 1.2 3.5E-05 23.8 3.5 31 143-174 9-39 (42) 79 >3bd1_A CRO protein; transcrip 83.3 1.1 3.2E-05 24.1 3.1 48 144-192 4-54 (79) 80 >1je8_A Nitrate/nitrite respon 82.7 3.3 9.8E-05 20.9 6.0 39 133-174 20-58 (82) 81 >2pn6_A ST1022, 150AA long hyp 82.7 1.1 3.3E-05 23.9 3.0 30 145-174 10-39 (53) 82 >1ojl_A Transcriptional regula 82.5 1.3 4E-05 23.4 3.4 39 135-174 12-50 (51) 83 >1z05_A Transcriptional regula 82.4 1.8 5.4E-05 22.5 4.0 42 141-191 42-83 (132) 84 >3clo_A Transcriptional regula 82.0 3.5 0.0001 20.7 6.0 27 147-174 10-36 (60) 85 >2e1c_A Putative HTH-type tran 81.9 2.3 6.8E-05 21.9 4.4 40 134-174 24-63 (77) 86 >2o8x_A Probable RNA polymeras 81.7 2.2 6.5E-05 22.1 4.2 39 134-174 15-53 (70) 87 >3e7l_A Transcriptional regula 81.4 1.5 4.3E-05 23.2 3.2 43 136-179 17-59 (63) 88 >3kcc_A Catabolite gene activa 81.0 2 6E-05 22.3 3.9 23 152-174 29-51 (72) 89 >3b73_A PHIH1 repressor-like p 80.9 1.2 3.6E-05 23.7 2.7 40 135-176 11-53 (111) 90 >2kko_A Possible transcription 80.8 2 5.8E-05 22.3 3.7 32 146-177 32-63 (82) 91 >1j5y_A Transcriptional regula 80.8 2.7 7.9E-05 21.5 4.4 43 134-176 16-60 (79) 92 >2zcw_A TTHA1359, transcriptio 80.6 2.1 6.2E-05 22.2 3.8 37 152-197 29-65 (85) 93 >1l3l_A Transcriptional activa 80.6 2.3 6.7E-05 22.0 4.0 37 135-174 1-37 (61) 94 >1mkm_A ICLR transcriptional r 80.5 2.6 7.6E-05 21.6 4.2 42 135-176 4-47 (64) 95 >2oz6_A Virulence factor regul 80.1 2.3 6.9E-05 21.9 3.9 25 151-175 28-52 (72) 96 >2p4w_A Transcriptional regula 80.0 2.1 6.3E-05 22.1 3.7 32 146-177 22-53 (77) 97 >2cfx_A HTH-type transcription 79.9 1.6 4.7E-05 23.0 3.0 39 135-174 3-41 (55) 98 >3i4p_A Transcriptional regula 79.9 1.8 5.4E-05 22.6 3.3 31 146-176 11-41 (53) 99 >2dbb_A Putative HTH-type tran 79.8 1.5 4.3E-05 23.2 2.8 39 135-174 7-45 (58) 100 >2qfc_A PLCR protein; TPR, HTH 79.8 0.75 2.2E-05 25.0 1.3 42 136-178 2-43 (89) 101 >1dw9_A Cyanate lyase; cyanate 79.7 1.7 5.2E-05 22.7 3.1 39 148-186 15-54 (69) 102 >2jsc_A Transcriptional regula 79.5 1.8 5.2E-05 22.6 3.1 31 147-177 29-59 (118) 103 >2rnj_A Response regulator pro 79.4 4.3 0.00013 20.2 5.4 39 133-174 28-66 (91) 104 >2cyy_A Putative HTH-type tran 79.3 1.8 5.5E-05 22.5 3.2 40 134-174 4-43 (57) 105 >2ia2_A Putative transcription 79.3 2.6 7.8E-05 21.6 4.0 44 133-176 15-60 (86) 106 >2hoe_A N-acetylglucosamine ki 79.3 1.7 5E-05 22.8 3.0 32 145-176 26-57 (85) 107 >1wh8_A CUT-like 2, homeobox p 79.3 2.6 7.7E-05 21.6 3.9 43 133-175 25-68 (111) 108 >3fx3_A Cyclic nucleotide-bind 79.0 2 6E-05 22.3 3.3 24 151-174 26-49 (86) 109 >2p5v_A Transcriptional regula 78.8 1.8 5.4E-05 22.6 3.0 39 135-174 8-46 (60) 110 >1a04_A Nitrate/nitrite respon 78.7 3.2 9.5E-05 21.0 4.3 39 133-174 25-63 (87) 111 >3dkw_A DNR protein; CRP-FNR, 78.7 1.3 4E-05 23.4 2.3 22 153-174 1-22 (49) 112 >2vxz_A Pyrsv_GP04; viral prot 78.6 2.6 7.6E-05 21.6 3.7 31 147-177 19-49 (165) 113 >3klo_A Transcriptional regula 78.6 2.5 7.4E-05 21.7 3.7 38 134-174 5-42 (71) 114 >3iwz_A CAP-like, catabolite a 78.5 1.4 4E-05 23.4 2.3 24 151-174 28-51 (72) 115 >3g3z_A NMB1585, transcription 78.4 3.5 0.0001 20.8 4.4 35 140-174 4-38 (91) 116 >2a61_A Transcriptional regula 78.3 3.7 0.00011 20.6 4.5 35 140-174 7-41 (66) 117 >1on2_A Transcriptional regula 78.2 3.6 0.00011 20.6 4.4 42 135-176 2-46 (142) 118 >3e6c_C CPRK, cyclic nucleotid 78.1 2.7 8E-05 21.5 3.7 34 152-194 30-63 (103) 119 >3d0s_A Transcriptional regula 77.9 1.7 5.2E-05 22.7 2.7 36 151-195 29-64 (80) 120 >2nnn_A Probable transcription 77.8 3.5 0.0001 20.8 4.2 36 139-174 5-40 (65) 121 >1uly_A Hypothetical protein P 77.8 3 8.7E-05 21.2 3.8 33 144-177 17-49 (74) 122 >1pdn_C Protein (PRD paired); 77.6 3.1 9.3E-05 21.1 3.9 30 146-176 12-41 (53) 123 >2oqg_A Possible transcription 77.5 2.4 7.1E-05 21.8 3.3 33 144-177 27-59 (79) 124 >2nyx_A Probable transcription 77.5 3.9 0.00011 20.5 4.4 35 140-174 5-39 (64) 125 >1r1u_A CZRA, repressor protei 77.0 3.1 9.2E-05 21.1 3.8 33 144-177 32-64 (106) 126 >1wh6_A CUT-like 2, homeobox p 76.8 3.5 0.0001 20.8 4.0 42 133-174 15-57 (101) 127 >2p5k_A Arginine repressor; DN 76.7 4.2 0.00012 20.2 4.4 41 137-177 3-49 (64) 128 >1x2l_A CUT-like 2, homeobox p 76.6 3.5 0.0001 20.7 4.0 42 133-174 15-57 (101) 129 >3hot_A Transposable element m 76.4 2.6 7.6E-05 21.6 3.2 32 144-175 12-44 (52) 130 >1i1g_A Transcriptional regula 76.3 2.7 8.1E-05 21.4 3.3 29 146-174 12-40 (54) 131 >1p4w_A RCSB; solution structu 76.2 3.5 0.0001 20.8 3.9 38 134-174 34-71 (99) 132 >2auw_A Hypothetical protein N 76.2 2.6 7.6E-05 21.6 3.2 31 143-173 5-35 (81) 133 >3cjn_A Transcriptional regula 76.0 4.4 0.00013 20.1 4.3 43 140-191 7-49 (78) 134 >3f6v_A Possible transcription 75.7 2.5 7.3E-05 21.7 3.0 32 146-177 65-96 (131) 135 >2g7u_A Transcriptional regula 75.6 4.6 0.00013 20.0 4.3 45 132-176 7-53 (75) 136 >1b4a_A Arginine repressor; he 75.6 3.4 1E-04 20.9 3.6 39 139-177 5-49 (68) 137 >2hsg_A Glucose-resistance amy 75.5 2.6 7.6E-05 21.6 3.0 36 152-187 2-38 (46) 138 >2a6h_F RNA polymerase sigma f 75.4 2.6 7.6E-05 21.6 3.0 54 133-188 24-79 (88) 139 >2fmy_A COOA, carbon monoxide 75.4 2.2 6.6E-05 22.0 2.7 26 151-176 30-55 (84) 140 >1g2h_A Transcriptional regula 75.4 2.9 8.7E-05 21.3 3.3 41 135-177 18-58 (61) 141 >3d1n_I POU domain, class 6, t 75.3 3.7 0.00011 20.6 3.8 41 135-175 3-50 (94) 142 >3cta_A Riboflavin kinase; str 75.0 3 8.8E-05 21.2 3.2 40 134-174 10-49 (91) 143 >3bdd_A Regulatory protein MAR 74.9 5 0.00015 19.8 4.4 35 140-174 4-38 (73) 144 >3ere_D Arginine repressor; X- 74.8 3.6 0.00011 20.6 3.6 45 133-177 14-64 (87) 145 >1yio_A Response regulatory pr 74.5 3.8 0.00011 20.5 3.7 28 146-174 9-36 (65) 146 >3dv8_A Transcriptional regula 74.2 3.9 0.00012 20.4 3.7 38 151-197 22-59 (74) 147 >3hrs_A Metalloregulator SCAR; 74.2 2.6 7.5E-05 21.6 2.7 29 146-174 13-42 (138) 148 >2q1z_A RPOE, ECF SIGE; ECF si 74.1 0.7 2.1E-05 25.2 -0.1 40 133-174 32-71 (82) 149 >2fxa_A Protease production re 74.0 4.8 0.00014 19.9 4.1 35 140-174 6-40 (81) 150 >2zdb_A Transcriptional regula 74.0 1.8 5.3E-05 22.6 1.9 35 151-194 28-62 (85) 151 >1ft9_A Carbon monoxide oxidat 73.8 2.4 7.1E-05 21.8 2.5 33 151-192 30-62 (90) 152 >2jrh_A Mitogen-activated prot 73.3 6.2 0.00018 19.2 4.5 49 246-296 22-70 (94) 153 >3h5t_A Transcriptional regula 73.1 3.7 0.00011 20.6 3.3 36 152-187 9-45 (60) 154 >2o0y_A Transcriptional regula 73.0 4.5 0.00013 20.1 3.7 46 131-176 15-62 (95) 155 >1yse_A DNA-binding protein SA 72.6 3.2 9.6E-05 21.0 3.0 42 133-174 19-61 (141) 156 >2npt_B Mitogen-activated prot 72.6 6.5 0.00019 19.0 4.6 49 246-296 38-86 (100) 157 >2fbi_A Probable transcription 72.6 5.5 0.00016 19.5 4.1 36 139-174 3-38 (75) 158 >1ku9_A Hypothetical protein M 72.6 6.5 0.00019 19.0 5.5 47 127-174 16-63 (88) 159 >3f6o_A Probable transcription 72.0 2.4 7.1E-05 21.8 2.2 32 146-177 25-56 (118) 160 >2cu1_A Mitogen-activated prot 71.6 6.9 0.0002 18.9 4.5 49 246-296 26-74 (103) 161 >1fse_A GERE; helix-turn-helix 71.5 6.9 0.0002 18.9 6.4 39 133-174 10-48 (74) 162 >1qpz_A PURA, protein (purine 71.4 2.6 7.7E-05 21.6 2.2 34 154-187 2-36 (45) 163 >2c60_A Human mitogen-activate 71.4 5.7 0.00017 19.4 4.0 49 246-296 49-97 (111) 164 >3bj6_A Transcriptional regula 71.1 6.3 0.00019 19.1 4.2 45 130-175 33-77 (125) 165 >3e97_A Transcriptional regula 71.0 4.9 0.00014 19.8 3.6 37 152-197 56-92 (112) 166 >2p7v_B Sigma-70, RNA polymera 71.0 5.6 0.00017 19.4 3.9 41 133-173 4-46 (68) 167 >2gau_A Transcriptional regula 70.8 3 9E-05 21.1 2.5 36 151-195 28-63 (81) 168 >3c57_A Two component transcri 70.4 6.5 0.00019 19.0 4.1 39 133-174 26-64 (95) 169 >2jpc_A SSRB; DNA binding prot 70.4 3.9 0.00012 20.4 3.0 23 152-174 13-35 (61) 170 >1wiz_A DNA-binding protein SA 70.3 3.9 0.00012 20.4 3.0 44 133-176 15-59 (101) 171 >3iyd_F RNA polymerase sigma f 70.3 1.6 4.6E-05 23.0 0.9 42 133-174 46-89 (110) 172 >1x3u_A Transcriptional regula 70.2 5.4 0.00016 19.6 3.6 38 134-174 16-53 (79) 173 >1nr3_A MTH0916, DNA-binding p 70.2 0.53 1.6E-05 26.0 -1.5 21 150-170 3-23 (46) 174 >3frw_A Putative Trp repressor 69.9 6.9 0.0002 18.9 4.1 31 146-177 30-60 (84) 175 >2qq9_A Diphtheria toxin repre 69.8 5.2 0.00015 19.6 3.5 33 144-176 15-48 (146) 176 >1s3j_A YUSO protein; structur 69.7 7 0.00021 18.8 4.1 51 131-191 31-81 (122) 177 >1z6r_A MLC protein; transcrip 69.3 6.6 0.0002 19.0 3.9 38 137-174 15-52 (107) 178 >2h09_A Transcriptional regula 69.2 5.7 0.00017 19.4 3.6 42 133-174 32-76 (155) 179 >2cg4_A Regulatory protein ASN 69.2 2.3 6.9E-05 21.9 1.6 31 146-176 13-43 (55) 180 >1fx7_A Iron-dependent repress 69.1 5.3 0.00016 19.6 3.4 41 134-174 3-46 (141) 181 >1l0o_C Sigma factor; bergerat 69.0 1.1 3.4E-05 23.9 0.0 22 152-173 214-235 (243) 182 >2qww_A Transcriptional regula 68.8 7.6 0.00023 18.6 4.2 75 131-215 35-117 (131) 183 >1ub9_A Hypothetical protein P 68.8 6.4 0.00019 19.1 3.8 33 143-175 21-53 (100) 184 >2qlz_A Transcription factor P 68.6 1.1 3.2E-05 24.0 -0.2 32 146-177 19-50 (76) 185 >2fbh_A Transcriptional regula 68.5 7.7 0.00023 18.6 4.1 33 142-174 7-40 (67) 186 >3dbi_A Sugar-binding transcri 68.1 1.2 3.6E-05 23.7 0.0 22 153-174 4-25 (185) 187 >1jgs_A Multiple antibiotic re 68.1 7.9 0.00023 18.5 4.1 50 133-192 30-79 (122) 188 >1lj9_A Transcriptional regula 68.0 7.4 0.00022 18.6 4.0 35 140-174 4-38 (87) 189 >3f3x_A Transcriptional regula 67.9 7.5 0.00022 18.6 4.0 40 133-174 33-72 (122) 190 >2hr3_A Probable transcription 67.8 7.6 0.00023 18.6 4.0 47 135-191 4-51 (94) 191 >3h5o_A Transcriptional regula 67.6 1.3 3.8E-05 23.6 0.0 35 152-186 4-39 (207) 192 >3ech_A MEXR, multidrug resist 67.5 7.1 0.00021 18.8 3.8 50 133-192 33-82 (122) 193 >2eth_A Transcriptional regula 67.3 8.2 0.00024 18.4 4.1 50 132-191 39-88 (130) 194 >2csf_A DNA-binding protein SA 67.3 6.2 0.00018 19.1 3.5 48 133-180 15-63 (101) 195 >1l9z_H Sigma factor SIGA; hel 67.0 6 0.00018 19.2 3.4 22 152-173 20-41 (63) 196 >2pij_A Prophage PFL 6 CRO; tr 67.0 5.2 0.00016 19.6 3.0 30 145-175 7-36 (67) 197 >1z91_A Organic hydroperoxide 66.7 6.9 0.0002 18.9 3.6 40 134-174 4-43 (78) 198 >3eco_A MEPR; mutlidrug efflux 66.3 8.8 0.00026 18.2 5.9 55 128-191 22-77 (119) 199 >3cdh_A Transcriptional regula 66.0 8 0.00024 18.4 3.8 44 130-174 6-49 (103) 200 >1jhf_A LEXA repressor; LEXA S 66.0 8.2 0.00024 18.4 3.9 33 144-176 15-50 (72) 201 >2bv6_A MGRA, HTH-type transcr 65.4 6.7 0.0002 18.9 3.3 36 139-174 6-41 (76) 202 >2gxg_A 146AA long hypothetica 65.3 9.2 0.00027 18.1 5.2 44 129-174 29-72 (121) 203 >1rzs_A Antirepressor, regulat 65.2 4.3 0.00013 20.2 2.3 27 146-173 5-31 (61) 204 >3deu_A Transcriptional regula 64.8 9.4 0.00028 18.0 5.6 76 129-214 45-127 (139) 205 >3f8m_A GNTR-family protein tr 64.5 8.3 0.00024 18.4 3.7 24 154-177 38-61 (77) 206 >1zs4_A Regulatory protein CII 64.3 7.5 0.00022 18.6 3.4 30 141-173 16-45 (62) 207 >2bgc_A PRFA; bacterial infect 64.1 4.9 0.00014 19.8 2.4 34 152-194 63-97 (132) 208 >1y0u_A Arsenical resistance o 64.0 8.8 0.00026 18.2 3.7 26 152-177 43-68 (96) 209 >3c7j_A Transcriptional regula 63.9 9.8 0.00029 17.9 3.9 26 152-177 49-74 (91) 210 >2v79_A DNA replication protei 63.9 7.7 0.00023 18.5 3.4 57 127-192 7-67 (120) 211 >3edp_A LIN2111 protein; APC88 63.8 9.8 0.00029 17.9 4.0 24 154-177 35-58 (76) 212 >3eet_A Putative GNTR-family t 63.6 7.1 0.00021 18.8 3.2 24 154-177 55-78 (96) 213 >1u8b_A ADA polyprotein; prote 62.7 7.8 0.00023 18.5 3.3 28 147-174 20-47 (65) 214 >1stz_A Heat-inducible transcr 62.0 11 0.00031 17.7 3.9 52 135-195 15-72 (105) 215 >3g7q_A Valine-pyruvate aminot 62.0 8.4 0.00025 18.3 3.3 30 47-76 37-67 (133) 216 >3jw4_A Transcriptional regula 61.9 8.8 0.00026 18.2 3.4 45 130-174 8-53 (101) 217 >3iwf_A Transcription regulato 61.5 11 0.00032 17.6 4.6 47 131-177 11-60 (74) 218 >2frh_A SARA, staphylococcal a 61.4 11 0.00032 17.6 3.9 42 132-174 32-75 (127) 219 >3fm5_A Transcriptional regula 61.3 11 0.00032 17.6 5.8 44 130-174 32-76 (124) 220 >3hsr_A HTH-type transcription 60.7 11 0.00032 17.6 3.7 52 130-191 29-80 (119) 221 >1hsj_A Fusion protein consist 60.5 7.8 0.00023 18.5 2.9 26 149-174 17-42 (87) 222 >2o3f_A Putative HTH-type tran 60.3 11 0.00033 17.5 4.6 66 124-189 6-78 (111) 223 >2hs5_A Putative transcription 59.8 12 0.00034 17.4 4.2 25 153-177 52-76 (94) 224 >2o4a_A DNA-binding protein SA 59.8 7.9 0.00023 18.5 2.9 68 135-205 7-75 (93) 225 >1xwr_A Regulatory protein CII 59.8 7.1 0.00021 18.8 2.6 30 141-173 15-44 (62) 226 >2pex_A Transcriptional regula 59.5 12 0.00035 17.4 4.2 35 140-174 6-40 (71) 227 >1e3o_C Octamer-binding transc 59.5 12 0.00035 17.4 3.7 35 141-175 13-53 (91) 228 >3bpv_A Transcriptional regula 59.2 12 0.00035 17.4 4.3 54 128-191 20-73 (114) 229 >3jvd_A Transcriptional regula 59.2 2.3 6.7E-05 22.0 0.0 23 152-174 6-28 (205) 230 >2k27_A Paired box protein PAX 59.0 9.9 0.00029 17.9 3.2 29 146-175 36-64 (75) 231 >2k9s_A Arabinose operon regul 58.6 12 0.00036 17.3 3.8 37 138-174 5-42 (46) 232 >2wv0_A YVOA, HTH-type transcr 58.5 12 0.00036 17.3 3.9 24 154-177 36-59 (82) 233 >2fa5_A Transcriptional regula 58.5 12 0.00036 17.3 4.3 40 134-174 46-85 (134) 234 >2di3_A Bacterial regulatory p 58.4 12 0.00036 17.3 4.2 24 154-177 30-53 (78) 235 >2a6h_F RNA polymerase sigma f 58.2 10 0.0003 17.8 3.2 37 143-179 16-56 (56) 236 >2jn6_A Protein CGL2762, trans 58.0 12 0.00037 17.2 4.6 43 135-177 6-48 (56) 237 >3bro_A Transcriptional regula 57.6 8.3 0.00025 18.3 2.7 22 153-174 2-23 (51) 238 >2e18_A NH(3)-dependent NAD(+) 57.6 12 0.00036 17.2 3.5 86 88-177 20-107 (128) 239 >2rdp_A Putative transcription 57.2 13 0.00038 17.1 5.7 44 130-174 35-78 (127) 240 >3ctp_A Periplasmic binding pr 56.6 2.7 7.9E-05 21.5 0.0 33 154-186 4-37 (200) 241 >3bja_A Transcriptional regula 56.4 9.9 0.00029 17.8 2.9 43 131-174 27-69 (118) 242 >1jye_A Lactose operon repress 55.5 2.8 8.4E-05 21.3 0.0 36 153-188 4-40 (219) 243 >3bru_A Regulatory protein, TE 55.5 14 0.0004 17.0 3.8 30 145-174 40-72 (72) 244 >1z4h_A TORI, TOR inhibition p 55.3 3.7 0.00011 20.6 0.6 29 152-180 10-38 (66) 245 >3k0l_A Repressor protein; hel 55.0 14 0.00041 16.9 4.1 44 130-174 39-82 (131) 246 >3bil_A Probable LACI-family t 54.8 3 8.8E-05 21.2 0.0 11 64-74 86-96 (348) 247 >2jj7_A Hemolysin II regulator 54.3 12 0.00035 17.4 3.0 31 144-174 16-49 (70) 248 >3e6m_A MARR family transcript 54.0 14 0.00043 16.8 4.1 41 133-174 49-89 (138) 249 >3boq_A Transcriptional regula 53.9 8.5 0.00025 18.3 2.2 71 134-214 44-121 (133) 250 >3if2_A Aminotransferase; YP_2 53.8 14 0.00041 16.9 3.3 31 46-76 64-95 (161) 251 >3hyi_A Protein DUF199/WHIA; l 53.7 15 0.00043 16.8 4.1 54 120-174 24-78 (91) 252 >2elh_A CG11849-PA, LD40883P; 53.2 15 0.00044 16.7 4.3 45 131-177 19-63 (87) 253 >2o20_A Catabolite control pro 53.0 3.3 9.8E-05 20.9 0.0 36 152-187 5-41 (202) 254 >3dbw_A Transcriptional regula 52.9 11 0.00031 17.7 2.6 21 45-65 31-51 (226) 255 >1jhg_A Trp operon repressor; 52.8 15 0.00044 16.7 4.9 33 146-178 16-48 (65) 256 >3e3m_A Transcriptional regula 52.3 3.4 0.0001 20.8 0.0 16 155-170 15-30 (221) 257 >3bwg_A Uncharacterized HTH-ty 51.0 10 0.00031 17.7 2.3 24 154-177 31-54 (82) 258 >2ek5_A Predicted transcriptio 50.2 11 0.00033 17.5 2.3 34 154-196 30-63 (101) 259 >3by6_A Predicted transcriptio 49.7 13 0.00037 17.2 2.5 33 154-195 37-69 (106) 260 >1hw1_A FADR, fatty acid metab 48.7 13 0.00038 17.1 2.4 23 154-176 33-55 (77) 261 >1aoy_A Arginine repressor; DN 48.2 18 0.00052 16.2 3.5 38 141-178 11-55 (78) 262 >2zb9_A Putative transcription 48.1 18 0.00052 16.2 3.1 32 143-174 31-65 (85) 263 >2cob_A LCOR protein; MLR2, KI 47.0 18 0.00055 16.1 4.3 40 134-174 13-52 (70) 264 >3fzv_A Probable transcription 46.9 18 0.00052 16.2 2.9 36 140-177 8-43 (88) 265 >2r2n_A Kynurenine/alpha-amino 46.8 19 0.00055 16.1 3.6 30 47-76 95-125 (192) 266 >1t33_A Putative transcription 46.2 19 0.00056 16.0 3.2 30 144-173 21-52 (224) 267 >3i53_A O-methyltransferase; C 45.9 19 0.00057 16.0 3.2 35 143-178 30-64 (90) 268 >3dew_A Transcriptional regula 45.8 19 0.00057 16.0 3.1 30 145-174 18-50 (72) 269 >2qwt_A Transcriptional regula 45.4 19 0.00057 16.0 3.0 30 144-173 22-53 (196) 270 >2g7s_A Transcriptional regula 44.9 20 0.00058 16.0 2.9 31 143-173 16-49 (50) 271 >1v4r_A Transcriptional repres 44.8 8 0.00024 18.4 0.9 24 154-177 37-60 (102) 272 >2fd5_A Transcriptional regula 44.6 16 0.00046 16.6 2.4 32 143-174 15-49 (75) 273 >2ip2_A Probable phenazine-spe 44.0 20 0.00061 15.8 3.0 29 149-177 38-66 (89) 274 >2yve_A Transcriptional regula 44.0 21 0.00061 15.8 3.0 32 143-174 12-46 (185) 275 >3lmm_A Uncharacterized protei 43.9 5.6 0.00016 19.5 0.0 36 139-174 107-143 (174) 276 >3bni_A Putative TETR-family t 43.8 21 0.00061 15.8 3.0 29 145-173 53-84 (85) 277 >3bqy_A Putative TETR family t 43.7 21 0.00061 15.8 3.1 21 153-173 23-43 (209) 278 >2kfs_A Conserved hypothetical 43.6 15 0.00046 16.6 2.2 24 152-175 31-54 (75) 279 >1ixc_A CBNR, LYSR-type regula 43.6 21 0.00062 15.8 3.9 37 138-176 3-39 (88) 280 >1rkt_A Protein YFIR; transcri 43.5 20 0.00058 15.9 2.8 30 145-174 22-54 (82) 281 >3ihu_A Transcriptional regula 43.5 21 0.00062 15.8 4.2 26 152-177 39-64 (82) 282 >1au7_A Protein PIT-1, GHF-1; 43.2 21 0.00063 15.7 3.5 34 141-174 9-48 (82) 283 >1sfx_A Conserved hypothetical 42.8 21 0.00063 15.7 4.0 33 141-173 5-37 (64) 284 >2hyj_A Putative TETR-family t 42.6 21 0.00063 15.7 2.8 30 144-173 21-53 (200) 285 >2ao9_A Phage protein; structu 42.5 22 0.00064 15.7 5.0 40 152-191 48-87 (90) 286 >3fxq_A LYSR type regulator of 42.5 22 0.00064 15.7 3.8 37 138-176 4-40 (91) 287 >2q7w_A Aspartate aminotransfe 42.4 22 0.00064 15.7 3.3 29 48-76 113-142 (220) 288 >2iu5_A DHAS, hypothetical pro 42.3 20 0.00059 15.9 2.6 27 101-128 40-66 (195) 289 >1p4x_A Staphylococcal accesso 42.1 22 0.00065 15.6 3.8 24 151-174 18-41 (95) 290 >3bqz_B HTH-type transcription 41.8 22 0.00065 15.6 2.8 30 145-174 12-44 (71) 291 >2q24_A Putative TETR family t 41.7 22 0.00065 15.6 2.8 31 144-174 24-56 (194) 292 >1zk8_A Transcriptional regula 41.0 23 0.00067 15.5 3.4 31 143-173 16-49 (183) 293 >2csb_A Topoisomerase V, TOP61 41.0 23 0.00067 15.5 8.1 83 146-232 10-105 (142) 294 >2nx4_A Transcriptional regula 41.0 23 0.00068 15.5 3.0 31 144-174 19-52 (194) 295 >3g7r_A Putative transcription 40.8 23 0.00068 15.5 3.0 30 144-173 44-76 (221) 296 >2eh3_A Transcriptional regula 40.5 23 0.00069 15.5 3.0 31 144-174 11-44 (179) 297 >2vz4_A Tipal, HTH-type transc 40.3 13 0.0004 17.0 1.5 69 153-228 2-70 (74) 298 >2w53_A Repressor, SMet; antib 40.2 23 0.00069 15.4 2.8 21 153-173 32-52 (219) 299 >2dg8_A Putative TETR-family t 40.0 24 0.0007 15.4 2.9 29 145-173 19-50 (193) 300 >3e7q_A Transcriptional regula 39.9 24 0.0007 15.4 2.7 22 152-173 34-55 (215) 301 >2k9m_A RNA polymerase sigma f 39.7 24 0.00071 15.4 3.1 45 133-177 15-64 (72) 302 >3iuv_A Uncharacterized TETR f 39.6 24 0.00071 15.4 3.3 30 144-173 19-51 (201) 303 >2rek_A Putative TETR-family t 39.6 24 0.00071 15.4 3.6 30 145-174 26-57 (82) 304 >1d5y_A ROB transcription fact 39.4 20 0.0006 15.9 2.3 23 152-174 19-41 (104) 305 >1vi0_A Transcriptional regula 39.2 24 0.00072 15.3 3.1 30 144-173 17-49 (206) 306 >2g3b_A Putative TETR-family t 38.5 25 0.00074 15.3 2.7 20 154-173 25-44 (208) 307 >1tc3_C Protein (TC3 transposa 38.4 23 0.00067 15.5 2.4 38 135-174 6-43 (51) 308 >3lhq_A Acrab operon repressor 38.0 25 0.00075 15.2 3.0 29 145-173 24-55 (220) 309 >3k69_A Putative transcription 37.7 26 0.00076 15.2 3.6 24 152-175 28-51 (136) 310 >2hku_A A putative transcripti 37.6 26 0.00076 15.2 3.0 29 145-173 30-60 (215) 311 >1tw3_A COMT, carminomycin 4-O 37.6 26 0.00076 15.2 3.1 33 144-177 16-48 (80) 312 >1neq_A DNA-binding protein NE 37.2 26 0.00077 15.1 2.6 39 132-174 6-44 (74) 313 >3jsj_A Putative TETR-family t 37.1 26 0.00077 15.1 3.0 29 146-174 20-50 (190) 314 >3gbg_A TCP pilus virulence re 37.0 26 0.00078 15.1 7.4 53 136-190 169-221 (276) 315 >2gen_A Probable transcription 37.0 26 0.00078 15.1 2.8 30 144-173 16-48 (197) 316 >2iai_A Putative transcription 36.9 25 0.00074 15.3 2.4 28 146-173 11-41 (200) 317 >2fbq_A Probable transcription 36.8 26 0.00078 15.1 3.0 19 154-172 29-47 (235) 318 >3egq_A TETR family transcript 36.8 27 0.00078 15.1 3.8 32 143-174 12-46 (69) 319 >3cwr_A Transcriptional regula 36.7 27 0.00079 15.1 3.1 21 153-173 38-58 (208) 320 >1y6u_A XIS, excisionase from 36.6 16 0.00048 16.5 1.4 32 149-180 13-44 (70) 321 >3cjd_A Transcriptional regula 36.5 27 0.00079 15.1 3.1 30 144-173 21-53 (198) 322 >2oi8_A Putative regulatory pr 36.5 26 0.00078 15.1 2.5 27 146-172 27-56 (58) 323 >2d6y_A Putative TETR family r 36.4 27 0.00079 15.1 3.8 30 145-174 18-50 (74) 324 >3he0_A Transcriptional regula 36.4 27 0.00079 15.1 2.8 28 146-173 22-52 (196) 325 >1qzz_A RDMB, aclacinomycin-10 36.4 27 0.0008 15.1 3.0 30 148-177 20-49 (83) 326 >2qtq_A Transcriptional regula 36.3 27 0.0008 15.1 3.6 31 144-174 25-58 (81) 327 >2g7g_A RHA04620, putative tra 36.3 27 0.0008 15.1 2.5 22 152-173 29-50 (213) 328 >2uxu_A HTH-type transcription 36.2 27 0.0008 15.0 3.0 31 144-174 20-53 (210) 329 >2vn2_A DNAD, chromosome repli 36.2 27 0.0008 15.0 3.8 50 125-174 6-59 (65) 330 >3col_A Putative transcription 36.1 27 0.0008 15.0 2.8 28 146-173 21-51 (196) 331 >1j1v_A Chromosomal replicatio 36.0 27 0.0008 15.0 5.1 37 138-174 30-69 (94) 332 >3gzi_A Transcriptional regula 35.8 27 0.00081 15.0 3.0 30 145-174 27-59 (218) 333 >1rr7_A Middle operon regulato 35.7 27 0.00081 15.0 4.1 29 146-174 16-45 (60) 334 >3c2b_A Transcriptional regula 35.5 28 0.00082 15.0 3.1 20 154-173 37-56 (221) 335 >1pb6_A Hypothetical transcrip 35.5 28 0.00082 15.0 2.8 21 153-173 39-59 (212) 336 >2of7_A Putative TETR-family t 35.4 28 0.00082 15.0 3.0 30 145-174 58-90 (95) 337 >2guh_A Putative TETR-family t 35.2 28 0.00083 14.9 3.2 30 144-173 48-80 (214) 338 >3ic7_A Putative transcription 34.9 5.2 0.00015 19.6 -1.3 24 154-177 8-31 (49) 339 >2gfn_A HTH-type transcription 34.9 28 0.00084 14.9 3.0 28 146-173 20-50 (209) 340 >2pbx_A Hemagglutinin/protease 34.9 28 0.00084 14.9 3.0 28 146-173 28-58 (203) 341 >1q06_A Transcriptional regula 34.8 25 0.00074 15.2 2.2 70 153-229 1-70 (74) 342 >1ui5_A A-factor receptor homo 34.8 28 0.00084 14.9 3.0 29 145-173 19-50 (215) 343 >2r0q_C Putative transposon TN 34.8 29 0.00084 14.9 3.1 33 146-179 20-52 (59) 344 >3eup_A Transcriptional regula 34.7 24 0.00072 15.3 2.1 30 144-173 20-52 (204) 345 >1fo8_A Alpha-1,3-mannosyl-gly 34.7 29 0.00085 14.9 3.4 25 271-295 47-71 (113) 346 >1zyb_A Transcription regulato 34.2 29 0.00086 14.8 2.6 23 152-174 145-167 (191) 347 >2id3_A Putative transcription 34.1 29 0.00086 14.8 3.1 22 152-173 60-81 (225) 348 >3cdl_A Transcriptional regula 34.1 29 0.00086 14.8 2.5 29 145-173 19-50 (51) 349 >2zcx_A SCO7815, TETR-family t 33.9 29 0.00087 14.8 3.0 19 154-172 45-63 (231) 350 >3hh0_A Transcriptional regula 33.8 23 0.00069 15.5 1.9 69 152-227 4-72 (74) 351 >2hxo_A Putative TETR-family t 33.8 30 0.00087 14.8 2.6 11 64-74 23-33 (237) 352 >2ibd_A Possible transcription 33.8 30 0.00087 14.8 2.8 28 146-173 25-55 (204) 353 >3frq_A Repressor protein MPHR 33.6 30 0.00088 14.8 3.6 32 143-174 16-50 (195) 354 >1sgm_A Putative HTH-type tran 33.4 30 0.00089 14.8 2.5 21 153-173 27-47 (191) 355 >2qib_A TETR-family transcript 33.3 30 0.00089 14.7 3.2 20 154-173 35-54 (213) 356 >2g7l_A TETR-family transcript 33.3 28 0.00083 14.9 2.2 23 53-75 14-37 (243) 357 >2w7n_A TRFB transcriptional r 33.3 30 0.00089 14.7 3.5 35 139-173 21-55 (73) 358 >1l8q_A Chromosomal replicatio 33.1 30 0.0009 14.7 2.4 26 149-174 56-82 (110) 359 >1j9i_A GPNU1 DBD;, terminase 33.0 22 0.00066 15.6 1.7 26 153-179 3-28 (68) 360 >3c0w_A Intron-encoded endonuc 32.8 31 0.00091 14.7 4.3 35 245-279 23-57 (59) 361 >3g1l_A Transcriptional regula 32.5 31 0.00092 14.7 3.3 16 155-170 67-82 (256) 362 >3geu_A Intercellular adhesion 32.1 26 0.00077 15.2 1.9 29 146-174 14-45 (189) 363 >2zcm_A Biofilm operon icaabcd 32.0 32 0.00093 14.6 3.6 31 144-174 16-49 (192) 364 >1qgu_B Protein (nitrogenase m 32.0 32 0.00093 14.6 3.7 51 57-108 18-75 (83) 365 >3ei9_A LL-diaminopimelate ami 31.9 32 0.00094 14.6 3.1 31 46-76 110-141 (218) 366 >3ljl_A Transcriptional regula 31.7 32 0.00094 14.6 3.5 28 146-173 25-55 (60) 367 >1sfu_A 34L protein; protein/Z 31.7 32 0.00095 14.6 2.4 23 151-173 28-50 (75) 368 >1t56_A EThr repressor; helix- 31.7 32 0.00095 14.6 3.2 21 153-173 45-65 (216) 369 >3bhq_A Transcriptional regula 31.5 32 0.00095 14.6 3.0 30 144-173 21-53 (211) 370 >3bjb_A Probable transcription 31.5 32 0.00095 14.6 3.2 22 152-173 42-63 (207) 371 >3crj_A Transcription regulato 31.5 32 0.00095 14.6 2.7 29 145-173 24-55 (199) 372 >3f0c_A TETR-molecule A, trans 31.4 32 0.00095 14.5 3.0 18 154-171 33-50 (216) 373 >2v57_A TETR family transcript 31.3 32 0.00096 14.5 2.9 31 144-174 23-54 (190) 374 >1m7y_A ACC synthase, 1-aminoc 31.2 33 0.00096 14.5 3.1 30 47-76 88-118 (195) 375 >2fq4_A Transcriptional regula 31.1 33 0.00097 14.5 3.0 29 146-174 23-54 (73) 376 >1u78_A TC3 transposase, trans 30.9 33 0.00097 14.5 3.7 32 143-174 15-48 (88) 377 >2pz9_A Putative regulatory pr 30.6 33 0.00098 14.5 3.3 21 153-173 51-71 (226) 378 >3knw_A Putative transcription 30.6 33 0.00098 14.5 3.0 19 154-172 36-54 (212) 379 >2din_A Cell division cycle 5- 30.5 33 0.00099 14.4 3.5 48 126-174 3-50 (66) 380 >3hhg_A Transcriptional regula 30.3 34 0.001 14.4 4.3 34 142-177 9-42 (88) 381 >3b81_A Transcriptional regula 30.2 34 0.001 14.4 2.7 31 144-174 20-53 (80) 382 >1wst_A MSAT, multiple substra 30.0 34 0.001 14.4 3.6 31 46-76 85-116 (182) 383 >2pjp_A Selenocysteine-specifi 29.6 35 0.001 14.4 4.3 41 135-176 1-44 (61) 384 >2z4s_A Chromosomal replicatio 29.6 13 0.00039 17.1 0.0 26 149-174 122-147 (178) 385 >2opt_A Actii protein; helical 29.6 35 0.001 14.3 4.0 32 143-174 14-48 (67) 386 >3jtx_A Aminotransferase; NP_2 29.2 35 0.001 14.3 3.1 30 47-76 85-115 (189) 387 >2ahq_A Sigma-54, RNA polymera 29.1 35 0.001 14.3 4.6 50 134-183 15-73 (76) 388 >1b9m_A Protein (mode); DNA-bi 29.0 36 0.0011 14.3 4.3 37 138-176 22-58 (112) 389 >3fdb_A Beta C-S lyase, putati 28.8 36 0.0011 14.3 3.0 50 47-101 77-127 (175) 390 >3kkd_A Transcriptional regula 28.3 28 0.00084 14.9 1.6 32 100-132 61-92 (237) 391 >1in0_A YAJQ protein, HI1034; 28.1 37 0.0011 14.2 7.1 38 261-300 26-63 (72) 392 >1bw0_A TAT, protein (tyrosine 27.9 37 0.0011 14.2 3.2 30 47-76 136-166 (258) 393 >3dpj_A Transcription regulato 27.6 38 0.0011 14.1 3.0 31 144-174 17-50 (79) 394 >2ras_A Transcriptional regula 27.4 38 0.0011 14.1 3.3 28 146-173 22-52 (66) 395 >1u69_A Hypothetical protein; 27.3 38 0.0011 14.1 3.0 24 274-297 5-28 (49) 396 >1yaa_A Aspartate aminotransfe 27.1 38 0.0011 14.1 3.5 30 47-76 90-120 (207) 397 >2np5_A Transcriptional regula 27.0 38 0.0011 14.1 3.8 20 154-173 31-50 (203) 398 >2ovg_A Phage lambda CRO; tran 27.0 38 0.0011 14.1 2.9 26 147-174 10-35 (66) 399 >2fbk_A Transcriptional regula 26.4 22 0.00066 15.6 0.7 74 132-215 64-146 (157) 400 >2vpr_A Tetracycline resistanc 26.4 39 0.0012 14.0 2.1 30 145-174 14-46 (68) 401 >3dzz_A Putative pyridoxal 5'- 26.3 40 0.0012 14.0 3.0 30 47-76 83-113 (186) 402 >3fry_A Probable copper-export 26.0 40 0.0012 13.9 4.5 46 249-296 19-64 (73) 403 >2hxi_A Putative transcription 25.1 42 0.0012 13.8 3.8 20 154-173 51-70 (241) 404 >3isp_A HTH-type transcription 24.8 42 0.0012 13.8 2.6 34 141-176 11-44 (89) 405 >3cjl_A Domain of unknown func 24.7 42 0.0012 13.8 2.7 21 274-294 18-38 (70) 406 >1al3_A Cys regulon transcript 24.4 18 0.00054 16.1 0.0 31 146-177 11-41 (227) 407 >2heo_A Z-DNA binding protein 24.2 43 0.0013 13.7 3.9 32 143-174 15-47 (67) 408 >2qco_A CMER; transcriptional 24.2 28 0.00084 14.9 0.9 20 154-173 35-54 (210) 409 >2b0l_A GTP-sensing transcript 24.1 43 0.0013 13.7 4.1 36 142-177 28-68 (102) 410 >3him_A Probable transcription 23.8 29 0.00085 14.9 0.9 26 101-127 43-68 (211) 411 >3euc_A Histidinol-phosphate a 23.6 44 0.0013 13.7 2.6 29 47-75 121-150 (231) 412 >1iay_A ACC synthase 2, 1-amin 23.6 44 0.0013 13.7 3.3 27 49-75 90-117 (193) 413 >1ylf_A RRF2 family protein; s 23.3 45 0.0013 13.6 4.1 25 152-176 30-54 (149) 414 >1lc5_A COBD, L-threonine-O-3- 23.0 45 0.0013 13.6 3.1 30 47-76 116-146 (225) 415 >2r3s_A Uncharacterized protei 22.8 46 0.0014 13.6 2.9 33 144-177 16-48 (79) 416 >2juj_A E3 ubiquitin-protein l 22.4 41 0.0012 13.9 1.5 25 144-169 11-35 (56) 417 >2oo9_A E3 ubiquitin-protein l 21.7 48 0.0014 13.4 1.9 26 144-170 8-33 (46) 418 >2esn_A Probable transcription 21.4 49 0.0015 13.4 3.6 33 142-176 16-48 (94) 419 >2gb3_A Aspartate aminotransfe 21.3 49 0.0015 13.4 3.3 28 48-75 126-154 (236) 420 >3f8t_A Predicted ATPase invol 21.1 17 0.0005 16.4 -0.7 10 218-227 340-349 (398) 421 >2dou_A Probable N-succinyldia 20.9 50 0.0015 13.3 3.5 30 47-76 79-109 (178) 422 >2o7t_A Transcriptional regula 20.6 51 0.0015 13.3 3.9 28 146-173 19-49 (50) 423 >1yiz_A Kynurenine aminotransf 20.3 52 0.0015 13.2 3.1 30 47-76 89-119 (189) 424 >3gr5_A ESCC; secretin, type I 20.2 51 0.0015 13.3 1.6 46 246-292 21-69 (87) 425 >1x60_A Sporulation-specific N 20.0 52 0.0015 13.2 6.1 50 249-299 22-72 (79) No 1 >>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} (A:) Probab=99.88 E-value=4.3e-23 Score=167.97 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=95.1 Q ss_pred HHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC- Q ss_conf 2221255868733776543342100001345660240389823578999876898899999998863100155046205- Q gi|254780805|r 6 SKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI- 84 (300) Q Consensus 6 ~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~- 84 (300) +.+++|+||++++++.... ....+..||+++|.|+ |||. |+++.+++|++||+++|+++|++|++. T Consensus 2 ~~~~~g~~l~~~~~~~~~~----------~~~~~~~ipl~~i~~~--~~r~-~~~~~~~~L~~sI~~~G~~~p~iv~~~~ 68 (121) T 1yzs_A 2 APEGPGPSGGAQGGSIHSG----------RIAAVHNVPLSVLIRP--LPSV-LDPAKVQSLVDTIREDPDSVPPIDVLWI 68 (121) T ss_dssp CCCCSSSCSSSCSSCCCSS----------CCCCEEEEEGGGEECC--CCCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEE T ss_pred CCCCCCCCCCCCCCCCCCC----------CCCCEEECCHHHCCCC--CCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 8999897667789886568----------7672267689995689--9997-8989999999999975410684225501 Q ss_pred ----CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHH--HHHHHHHHHH Q ss_conf ----6544533357567777764210013543334641123--4556665431 Q gi|254780805|r 85 ----DNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSS--LEIAIVENVQ 131 (300) Q Consensus 85 ----~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~--~~~~l~EN~~ 131 (300) ++|.|+|++|||||+|++.+|+++|||+|.+++++++ +.++++||+| T Consensus 69 ~~~~~~~~y~ii~G~~R~~Aa~~lg~~~Ip~~v~d~~~~~~~~~~~~~~eN~q 121 (121) T 1yzs_A 69 KGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYLGASTPDLQ 121 (121) T ss_dssp ECTTSCEEEECCSCHHHHHHHHHTTCSEEEEEEEECCHHHHHHHHTTTCCCCC T ss_pred CCCCCCCEEEEEECHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCC T ss_conf 23678970899636899999998398833689997999999999752372349 No 2 >>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:1-99) Probab=99.84 E-value=3.9e-22 Score=161.80 Aligned_cols=97 Identities=42% Similarity=0.749 Sum_probs=86.4 Q ss_pred CHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC Q ss_conf 02221255868733776543342100001345660240389823578999876898899999998863100155046205 Q gi|254780805|r 5 YSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI 84 (300) Q Consensus 5 ~~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~ 84 (300) -+++++|++++++++. ....+..||++.|.|+|+|||+.++++.+++|++||+++|+++||+|++. T Consensus 3 ~k~~~~~~~~~a~~~~--------------~~~~~~~i~i~~i~~~~~n~r~~~~~~~~~~L~~sI~~~G~~~Pi~V~~~ 68 (99) T 1vz0_A 3 RKPSGLGRGLEALLPK--------------TGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQ 68 (99) T ss_dssp ----------------------------------CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEE T ss_pred CCCCCCCCCHHHHCCC--------------CCCCEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC T ss_conf 7867677687884788--------------77874883299976798999877798899999999986234354168745 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 65445333575677777642100135433346 Q gi|254780805|r 85 DNGLYKIIAGERRFRAAKMASLSEVPVIIRNV 116 (300) Q Consensus 85 ~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~ 116 (300) + |+|+|++|||||+||+.+|+++|||+|.|+ T Consensus 69 ~-g~y~ii~G~~R~~aa~~lg~~~Ip~~v~d~ 99 (99) T 1vz0_A 69 G-DGYELVAGERRYRAALMAGLQEVPAVVKDL 99 (99) T ss_dssp T-TEEEEEECHHHHHHHHHHTCSEEEEEECCC T ss_pred C-CEEEEEECHHHHHHHHHCCCCEEEEEEEEC T ss_conf 9-858998478888999986997323699728 No 3 >>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} (A:1-93,A:228-242) Probab=99.80 E-value=1.1e-20 Score=152.53 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=78.8 Q ss_pred CCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC--CCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 1345660240389823578999876898899999998863100155046205--65445333575677777642100135 Q gi|254780805|r 33 ETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFRAAKMASLSEVP 110 (300) Q Consensus 33 ~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~--~~g~y~ii~G~rR~rAa~~~g~~~ip 110 (300) ......+..||++.|.++|+|||+.|+++.+++|+.||+++|+++|++|++. ++|+|+|++|||||+||+.+|+++|| T Consensus 7 ~~~~~~i~~ipi~~I~~~~~~pR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~~~~g~y~Ii~G~~R~~Aa~~lg~~~Ip 86 (108) T 1vk1_A 7 PKYDIPVKKVEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAP 86 (108) T ss_dssp ----CCEECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEE T ss_pred CCCCCCEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCC T ss_conf 78899804615236602668996558999999999999981986684898336889757985055599999987997657 Q ss_pred CCCCCCCCH Q ss_conf 433346411 Q gi|254780805|r 111 VIIRNVDNK 119 (300) Q Consensus 111 ~iv~~~~d~ 119 (300) |+|+++++- T Consensus 87 v~I~d~d~~ 95 (108) T 1vk1_A 87 SVILDYFPF 95 (108) T ss_dssp EEEECTTSS T ss_pred EEEEECCCC T ss_conf 899837936 No 4 >>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} (A:) Probab=99.80 E-value=3.6e-20 Score=149.16 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=81.8 Q ss_pred CCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEECC----CCCCCCCCCCHHHHHHHHHHHC Q ss_conf 0134566024038982357899987689889999999886310015-5046205----6544533357567777764210 Q gi|254780805|r 32 TETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQ-PLIVRAI----DNGLYKIIAGERRFRAAKMASL 106 (300) Q Consensus 32 ~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lq-Pi~Vr~~----~~g~y~ii~G~rR~rAa~~~g~ 106 (300) .......+..||+++|.| +|||+ |+++.+++|++||+++|+++ |++||+. ++|+|+|++|||||+|++.+|+ T Consensus 7 ~~~~~~~i~~i~i~~i~~--~~~r~-~~~~~i~~L~~SI~~~G~~~ppivvr~~~~~~~~~~y~ii~G~rR~~A~~~lg~ 83 (110) T 1xw3_A 7 HSGRIAAVHNVPLSVLIR--PLPSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQR 83 (110) T ss_dssp CCCCCEEEEEEEGGGEEC--CSCCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTC T ss_pred CCCCCCEEEEECHHHCCC--CCCCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHCCC T ss_conf 348867379946899689--99998-899999999999997640067627985036788841899844889999987698 Q ss_pred CCCCCCCCCCCCHHH--HHHHHHHHHH Q ss_conf 013543334641123--4556665431 Q gi|254780805|r 107 SEVPVIIRNVDNKSS--LEIAIVENVQ 131 (300) Q Consensus 107 ~~ip~iv~~~~d~~~--~~~~l~EN~~ 131 (300) ++|||+|+++++.++ +.++++||+| T Consensus 84 ~~ip~~v~~~~~~e~~~~~~~l~eN~Q 110 (110) T 1xw3_A 84 ETIPAKLVQSTLSDLRVYLGASTPDLQ 110 (110) T ss_dssp SEEEEEEEEECHHHHHHHHGGGCCCCC T ss_pred CEEEEEEEECCHHHHHHHHHCCCCCCC T ss_conf 865089998999999998733582349 No 5 >>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76) Probab=99.73 E-value=2.3e-18 Score=137.61 Aligned_cols=76 Identities=30% Similarity=0.468 Sum_probs=72.0 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77777642100135433346411234556665431022104899999998521011104679999743378778656565 Q gi|254780805|r 97 RFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 97 R~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ||+||+.+|+++|||+|++.+|.+ .+++||+||+||+|+|+|.+|++|++. |+|++++|+++|+|++||+++|+|+ T Consensus 1 R~rA~~~ag~~~ip~iV~~~~d~~---~~l~EN~~R~~ls~~e~a~~~~~l~~~-g~s~~~iA~~lg~s~~~V~~~l~Ll 76 (76) T 1r71_A 1 RYRGSKWAGKKSIPAFIDNDYNEA---DQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLL 76 (76) T ss_dssp ----------------------CC---HHHHHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGG T ss_pred CHHHHHHCCCCCCCEEECCCCCHH---HHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHC T ss_conf 928898759984336861664469---999998650689999999999999983-8989999999888999999999980 No 6 >>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A (A:1-81) Probab=99.65 E-value=1.2e-16 Score=126.48 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=71.2 Q ss_pred HHHC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHCCH Q ss_conf 4310-22104899999998521011104679999743378778656565435899998764-2101677777640100 Q gi|254780805|r 129 NVQR-KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRK-EEISLGHARTLVSTSD 204 (300) Q Consensus 129 N~~R-~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~-~~is~ghar~Ll~~~~ 204 (300) |+|| +||||+|+|.+|+++++. |+||+++|+++|+|+++|+|.|++++||++|++++.. +.||.+||++|+.+.+ T Consensus 1 niQr~edls~~E~a~~y~~~l~~-g~tQ~elA~~lg~S~s~Vs~~l~la~LP~~vi~~f~~~~~ls~~~a~~L~~l~~ 77 (81) T 1zx4_A 1 DVQTALQHSIREIGLRLXRXKND-GXSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGD 77 (81) T ss_dssp ----CCSSCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 96435658899999999999987-999999999989799999999999849999999730667777159999999998 No 7 >>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158) Probab=99.46 E-value=7.3e-14 Score=108.66 Aligned_cols=59 Identities=53% Similarity=0.858 Sum_probs=56.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 411234556665431022104899999998521011104679999743378778656565 Q gi|254780805|r 117 DNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 117 ~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +|+++..++++||+||+||+|+|+|.+|++|++. |+|++++|+++|+|++||+++|+|| T Consensus 1 sd~~a~~~~l~EN~qR~dl~p~E~a~a~~~l~~~-g~s~~~iA~~~G~s~~~V~~~L~LL 59 (59) T 1vz0_A 1 TDREALELALVENLQREDLSPVEEARGYQALLEM-GLTQEEVARRVGKARSTVANALRLL 59 (59) T ss_dssp CHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHGG T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 8378999999998660589999999999989998-8729999987599999985677664 No 8 >>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:159-230) Probab=99.39 E-value=1.8e-13 Score=106.12 Aligned_cols=62 Identities=29% Similarity=0.399 Sum_probs=55.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC Q ss_conf 4358999987642101677777640100--4689999742224778999999764102222223 Q gi|254780805|r 177 KLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKK 238 (300) Q Consensus 177 ~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~~Ii~~~LSVRe~E~lVk~~~~~~~~~kk 238 (300) +||++||++|.+|.||+||||+|+++++ +.+++++|+.++||||++|++|+.+..+...+++ T Consensus 1 kLp~~vq~~i~~g~is~GHARaLL~L~~~~q~~~~~~ii~~~lsVR~~E~~v~~~~~~~~~~~~ 64 (72) T 1vz0_A 1 QLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAE 64 (72) T ss_dssp GSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCCCHHHHCC-------------- T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 1336777777528732789998852997999999999998499999999999986328988878 No 9 >>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural genomics, PSI-2, protein structure initiative; 2.61A {Agrobacterium tumefaciens str} (A:) Probab=96.95 E-value=0.0012 Score=42.95 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=54.0 Q ss_pred CCCCEEEEHHHCCCCCCCCCCCCCHH--HHHHHHHHHHH--CCCC--CCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 56602403898235789998768988--99999998863--1001--550462056544533357567777764210013 Q gi|254780805|r 36 PESQDCISIHSIVPNPHNPRNYFESE--GLEDLCQSIKS--HGII--QPLIVRAIDNGLYKIIAGERRFRAAKMASLSEV 109 (300) Q Consensus 36 ~~~~~~i~i~~i~~~p~~pR~~~~~~--~l~eLa~SI~~--~G~l--qPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~i 109 (300) .+...+|+|+++.|- |..--+++- +..++..-.++ ...+ .|+.|...++|+|.|++||+|.+|+..+|..+| T Consensus 6 ~~~l~~V~i~~L~PT--Q~~VG~~Ev~~k~~~~~~~~~~~~~~~l~~~pipvVigp~g~lylvDgHH~~~Al~~~g~~~v 83 (205) T 2hwj_A 6 EPRLSRIAIDKLRPT--QIAVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHV 83 (205) T ss_dssp SCBEEEEEGGGCBCS--BSEECHHHHHHHHHHHHTCC-----CCTTCBEEEEEECSTTCEEECSCHHHHHHHHHTTCCEE T ss_pred CCCEEEEEHHHCCCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCEEEECCHHHHHHHHHCCCCEE T ss_conf 882578688873783--375769999999999986088899999856985489889998677766078889987488648 Q ss_pred CCCCC-CCCCH Q ss_conf 54333-46411 Q gi|254780805|r 110 PVIIR-NVDNK 119 (300) Q Consensus 110 p~iv~-~~~d~ 119 (300) +++|. |+++. T Consensus 84 ~~~Vi~dls~~ 94 (205) T 2hwj_A 84 LTSEVAKFSHL 94 (205) T ss_dssp EEEEEEECTTS T ss_pred EEEEEEECCCC T ss_conf 99997523559 No 10 >>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} (A:1-122) Probab=94.82 E-value=0.057 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=44.8 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 112345566654310221048999999985210111046799997433787786565 Q gi|254780805|r 118 NKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 118 d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.+-.-.-+|.+-|+| |..-+.-++..+..+.++|.++|...|.|.|+||..|. T Consensus 12 eE~~d~~~eVe~llr~d--~~~v~~eIK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~ 66 (122) T 2h8r_A 12 EEAAEQRAEVDRMLSED--PWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (122) T ss_dssp HHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHC--HHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHC T ss_conf 85422121158887558--99999999999988698636554443777427999976 No 11 >>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} (A:1-85) Probab=94.71 E-value=0.058 Score=32.18 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=44.7 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 112345566654310221048999999985210111046799997433787786565 Q gi|254780805|r 118 NKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 118 d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++....-.-+|.+-|+| |..-+.-++..+..++++|..+|+..|.|.|+||..|. T Consensus 11 eE~~~~~~~Veellr~d--~~~v~~eIK~Fl~~~~I~Q~~Va~~TGisQS~iSq~L~ 65 (85) T 1ic8_A 11 EEAAHQKAVVETLLQED--PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN 65 (85) T ss_dssp HHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCHHCCCCCCCCHHHHHHHHC T ss_conf 88888999999998607--09999999999987389602200344657789998831 No 12 >>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} (A:) Probab=94.19 E-value=0.059 Score=32.14 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHH Q ss_conf 489999999852101110467999974337877865656-5-4358999987642 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI-L-KLPSSVREMIRKE 189 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL-l-~L~~~i~~~l~~~ 189 (300) ...-+..++.+..+.|+||.++|+++|.|+++|+++.+= . ..+.+....+... T Consensus 38 ~~~i~~~l~~~R~~~glsq~~lA~~~Gis~s~is~~e~g~~~~ps~~~l~~la~~ 92 (120) T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLXTLLNA 92 (120) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 9999999999999869857656676288847768997188224489999999998 No 13 >>2a6c_A Helix-turn-helix motif; NP_841403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: CIT; 1.90A {Nitrosomonas europaea} (A:) Probab=94.06 E-value=0.065 Score=31.88 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999985210111046799997433787786565 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..-+.-++.+..+.|+||.++|+++|.|+++|+++.+ T Consensus 17 ~~i~~~lk~~r~~~gltq~elA~~~Gis~~~is~~e~ 53 (83) T 2a6c_A 17 SQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLXR 53 (83) T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC T ss_conf 9999999999999699889999998557635558862 No 14 >>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} (A:1-73) Probab=94.03 E-value=0.074 Score=31.51 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=36.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565654 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .++...-+..++.+.++.|+||.++|+.+|.|+++|+++..=-. T Consensus 7 ~~~~~~i~~~ik~lr~~~~lsq~elA~~lgis~~~i~~~e~G~~ 50 (73) T 3ivp_A 7 KYDFRALGLAIKEARKKQGLTREQVGAXIEIDPRYLTNIENKGQ 50 (73) T ss_dssp SCCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCC T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCC T ss_conf 04899999999999998399999997653989749998962467 No 15 >>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} (A:) Probab=93.97 E-value=0.069 Score=31.72 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=34.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998521011104679999743378778656565435 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) ..-+..++.+....|+||+++|+.+|.|+++|+++.+=-.-| T Consensus 8 ~~ig~~lk~~r~~~g~sq~~lA~~~gis~~tis~~e~G~~~p 49 (94) T 2kpj_A 8 AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIP 49 (94) T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHH T ss_conf 999999999999909999999998853005678876010004 No 16 >>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A (A:1-70) Probab=93.82 E-value=0.071 Score=31.62 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=37.5 Q ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111-046799997433787786565654358999987 Q gi|254780805|r 139 EEALGYEQLISEYGY-TQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186 (300) Q Consensus 139 e~A~~~~~l~~~~~~-t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l 186 (300) .-+..++++....|+ ||.++|+.+|.|+++|+++.+=-..|.+....+ T Consensus 6 ~~~~ri~~~r~~~g~~tq~~lA~~lgis~~~is~~e~g~~~p~~~l~~i 54 (70) T 2fjr_A 6 SNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHC 54 (70) T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCHHHHHHH T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH T ss_conf 7899999999980987699999997969999999982898666899999 No 17 >>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54) Probab=93.74 E-value=0.088 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .|+||.|||+++|.||++|+++|... T Consensus 20 ~gltQ~eIA~~lgiSR~~VsRlL~~A 45 (54) T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRG 45 (54) T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 49999999998698999999999999 No 18 >>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A (A:) Probab=93.74 E-value=0.062 Score=31.98 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565654 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .-+..++++..+.|+||.++|+++|.|+++|+++..=-. T Consensus 28 ~i~~~lk~~r~~~gltq~elA~~~gis~~~i~~~e~G~~ 66 (99) T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSR 66 (99) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 999999999998499999999656774238999974234 No 19 >>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} (L:) Probab=93.62 E-value=0.042 Score=33.09 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998521011104679999743378778656565 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ..-+..++.+.++.|+||.++|+.+|.|+++|+++.+=- T Consensus 4 ~~i~~~lk~~r~~~~ls~~~la~~~gis~~~i~~~e~g~ 42 (68) T 2r1j_L 4 QLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSE 42 (68) T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 999999999999849999999989697999999998799 No 20 >>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A (A:) Probab=93.46 E-value=0.086 Score=31.08 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=37.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 489999999852101110467999974337877865656-543589999876 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR 187 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~ 187 (300) ...-+..++.+....|+||.++|+.+|.|+++|+++.+= ...+.+....+. T Consensus 26 ~~~ig~~l~~~R~~~g~tq~elA~~~gis~~~is~~e~g~~~ps~~~l~~ia 77 (117) T 3f52_A 26 REALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVC 77 (117) T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 9999999999999959899999988603077899997530327699999999 No 21 >>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:) Probab=93.37 E-value=0.12 Score=30.23 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=25.6 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011104679999743378778656565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +......+ ++||.+||+++|.|+++|+++|+-+ T Consensus 22 ~~~~yy~e-~~tq~eIA~~LgiSr~~V~r~L~~a 54 (200) T 2p8t_A 22 AVIFLLKE-PLGRKQISERLELGEGSVRTLLRKL 54 (200) T ss_dssp HHHHHTTS-CBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99998348-8558999988098278999999999 No 22 >>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} (A:1-65) Probab=93.35 E-value=0.079 Score=31.33 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=29.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999852101110467999974337877865656 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .-++.+..+.|+||+++|+++|.|+++|+++..= T Consensus 4 ~~l~~lr~~~g~sq~~lA~~~gis~~~i~~~e~g 37 (65) T 1b0n_A 4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERN 37 (65) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9999999984999999987858679999999879 No 23 >>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} (A:) Probab=93.34 E-value=0.08 Score=31.30 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999852101110467999974337877865656 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) -+..++.+..+.|+||+++|+++|.++++|+++.+= T Consensus 11 ig~~lk~~r~~~glsq~ela~~~gis~~~i~~~e~g 46 (84) T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESF 46 (84) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCC T ss_conf 999999999985999999999854158779999839 No 24 >>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} (3:) Probab=93.26 E-value=0.079 Score=31.32 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999852101110467999974337877865656 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) -+..++++..+.|+||+++|+++|.|+++|+++.+= T Consensus 18 ~g~~lk~~R~~~g~sq~elA~~~gis~~~i~~~E~G 53 (92) T 1lmb_3 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNG 53 (92) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 999999999992999999998888788579999759 No 25 >>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} (A:) Probab=93.16 E-value=0.089 Score=30.98 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++.+..+.|+||+++|+.+|.|+++|+++.+ T Consensus 3 g~~lk~~R~~~gltq~~la~~~gvs~~~i~~~E~ 36 (69) T 1r69_A 3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999999999499999997850989999999987 No 26 >>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} (A:1-76) Probab=93.15 E-value=0.085 Score=31.11 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=32.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565654 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .-+..++.+....|+||.++|+++|.|+++|+++..=-. T Consensus 11 ~~~~~lk~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~ 49 (76) T 1y9q_A 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGES 49 (76) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 999999999998299999999998949999999976997 No 27 >>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} (A:) Probab=93.12 E-value=0.067 Score=31.79 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=31.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565435 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +..++++..+.|+||+++|+.+|.|+++|+++.+=-..| T Consensus 13 g~~ir~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p 51 (73) T 3fmy_A 13 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXP 51 (73) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCC T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999999999869999999999798999999999499899 No 28 >>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} (A:) Probab=93.12 E-value=0.082 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=29.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++.+....|+||.++|..+|.|+++|+++.+ T Consensus 16 g~~lk~~R~~~gltq~~lA~~~gis~~~is~~E~ 49 (86) T 3eus_A 16 CQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86) T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999998499999999997969999999988 No 29 >>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* (B:) Probab=93.06 E-value=0.14 Score=29.71 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.9 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04899999998521011104679999743378778656565435 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) ....-+..++.+....|+||.++|+.+|.|+++|+++.+=-..| T Consensus 9 ~~~~i~~~lk~~R~~~g~sq~elA~~~gis~~~is~~e~G~~~p 52 (88) T 2wiu_B 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNT 52 (88) T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGC T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCC T ss_conf 99999999999999859999999786399899999998799999 No 30 >>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=93.01 E-value=0.12 Score=30.13 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4899999998521011104679999743378778656565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ...-+..++.+....|+||.++|+.+|.|+++|+++.+=- T Consensus 11 ~~~ig~~ik~~R~~~~ltq~~lA~~~gis~~~is~~e~g~ 50 (91) T 1x57_A 11 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGR 50 (91) T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 7999999999999818869999998099999999997699 No 31 >>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} (A:) Probab=92.94 E-value=0.086 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565654 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) -+..++.+..+.|+||+++|+++|.|+++|+++..=-. T Consensus 13 ~~~~l~~~R~~~glsq~~lA~~~gis~~~i~~~e~G~~ 50 (80) T 3kz3_A 13 LKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGIN 50 (80) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSS T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 99999999999599899999878804979999888999 No 32 >>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56) Probab=92.81 E-value=0.1 Score=30.65 Aligned_cols=39 Identities=10% Similarity=0.348 Sum_probs=31.5 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 048999999985210111046799997433787786565 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|.--+.-++..++.+|+|+.++|+.+|.|+++|+..+. T Consensus 15 ~p~HPGeiL~e~Le~~gis~~~lA~~lgvs~~~is~Ii~ 53 (56) T 3cec_A 15 RPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVIN 53 (56) T ss_dssp CCCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 998833999999998799999999997827899999981 No 33 >>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46) Probab=92.67 E-value=0.11 Score=30.35 Aligned_cols=37 Identities=8% Similarity=0.058 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 4899999998521011104679999743378778656 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) |.-=..-++..++.+|+|+.++|+++|.|+++|++.+ T Consensus 6 P~HPGe~L~E~Le~~gis~~~lA~~lgvs~~~is~ii 42 (46) T 2ict_A 6 HPRPGDIIQESLDELNVSLREFARAXEIAPSTASRLL 42 (46) T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9887899999999979999999999977789999998 No 34 >>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} (A:) Probab=92.62 E-value=0.11 Score=30.44 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++.+..+.|+||+++|+++|.|+++|+++.+ T Consensus 9 ~~~i~~~r~~~~~tq~~la~~~gis~~~i~~~e~ 42 (78) T 3b7h_A 9 SEHLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999998599999999997989999999997 No 35 >>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} (A:) Probab=92.55 E-value=0.11 Score=30.29 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=31.6 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998521011104679999743378778656565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .-+..++.+....|+||+++|+++|.|+++|+++..=- T Consensus 14 ~ig~~lk~~R~~~glt~~~la~~~gis~~~i~~~e~g~ 51 (83) T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAE 51 (83) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 99999999999829999999988538999999998799 No 36 >>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} (A:) Probab=92.48 E-value=0.084 Score=31.14 Aligned_cols=46 Identities=11% Similarity=0.010 Sum_probs=34.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565654358999987 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l 186 (300) +.-++.+..+.|+||.++|+.+|.|+++|+++.+=-..|.+....+ T Consensus 5 g~rlk~~r~~~g~sq~~lA~~~gis~~~is~~e~g~~~~~~~l~~i 50 (71) T 1zug_A 5 SERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEI 50 (71) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCSTHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHH T ss_conf 9999999998499999999997158999999987999999999999 No 37 >>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:) Probab=92.45 E-value=0.13 Score=29.96 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999852101110467999974337877865656 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .-+..++.+....|+||.++|+++|.|+++|+++..= T Consensus 11 ~~~~~lk~~r~~~glsq~~lA~~~gvs~~~i~~~e~G 47 (82) T 3clc_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERN 47 (82) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCC T ss_conf 9999999999984999999961557479899999769 No 38 >>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} (A:) Probab=92.39 E-value=0.13 Score=29.93 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-+..++.+....|+||.++|+.+|.|+++|+++.+ T Consensus 13 ~~~~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~ 48 (74) T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999998099999999898969999999987 No 39 >>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} (A:1-96) Probab=92.37 E-value=0.13 Score=29.94 Aligned_cols=33 Identities=9% Similarity=0.198 Sum_probs=28.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101110467999974337877865656 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) -++.+....|+||.++|+++|.|+++|+++.+= T Consensus 15 ~lk~~R~~~gltq~~lA~~~gis~~~is~~e~g 47 (96) T 2eby_A 15 LLYEYLEPLDLKINELAELLHVHRNSVSALINN 47 (96) T ss_dssp HHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTT T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHC T ss_conf 999987767999999999878899999999938 No 40 >>2jvl_A TRMBF1; coactivator, helix-turn-helix, protein binding, transcription; NMR {Trichoderma reesei} (A:) Probab=92.35 E-value=0.14 Score=29.69 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=26.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ..|...+.|+||.++|+++|.|+++|+++.+=-. T Consensus 41 ~~R~r~~~gltq~~lA~~~Gvs~~~is~~E~G~~ 74 (107) T 2jvl_A 41 QGRQKFEPTMTQAELGKEIGETAATVASYERGTA 74 (107) T ss_dssp HHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCS T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999988699999998764739999999986987 No 41 >>1adr_A P22 C2 repressor; transcription regulation; NMR {Bacteriophage P22} (A:) Probab=92.32 E-value=0.088 Score=31.03 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=32.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998521011104679999743378778656565435 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) -+.-++.+..+.|+|+.++|+++|.|+++++++..=-..| T Consensus 6 ~~~rlk~~r~~~g~t~~ela~~~gis~~~i~~~e~g~~~p 45 (76) T 1adr_A 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEP 45 (76) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 9999999999939999999999697998999998799899 No 42 >>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} (A:) Probab=92.23 E-value=0.14 Score=29.73 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+.-++.+..+.|+||.++|+.+|.++++|+++.+ T Consensus 11 i~~~l~~~r~~~gltq~~la~~~gis~~~i~~~e~ 45 (77) T 2b5a_A 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999999998099999999896979999999985 No 43 >>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} (A:) Probab=92.12 E-value=0.11 Score=30.36 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=28.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.+....|+||+++|+.+|.|+++++++..=.. T Consensus 6 lk~~R~~~g~tq~~lA~~~gis~s~is~~e~g~~ 39 (66) T 1utx_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEKNKY 39 (66) T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC T ss_conf 9999998599999999975969999999987997 No 44 >>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* (A:72-133) Probab=91.86 E-value=0.12 Score=30.11 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=30.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565435 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +.-++.+..+.|+||.++|+.+|.|+++|+++-+=-..| T Consensus 2 g~~ik~~R~~~gltq~~lA~~~gis~~~is~~E~g~~~p 40 (62) T 3gn5_A 2 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQP 40 (62) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTCCCC T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCC T ss_conf 999999999849999999988099999999998699889 No 45 >>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} (A:1-68) Probab=91.82 E-value=0.13 Score=30.04 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=27.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999852101110467999974337877865 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~ 172 (300) .-++.+....|+||.++|..+|.|+.+|++. T Consensus 33 ~~ik~lR~~~gLSQ~~fA~~lGVs~~ti~~W 63 (68) T 2ppx_A 33 PRIKIIRRALKLTQEEFSARYHIPLGTLRDW 63 (68) T ss_dssp CHHHHHHHHTTCCHHHHHHHHTCCHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999999994999999999967659999999 No 46 >>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:) Probab=91.80 E-value=0.093 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|=..+ ...+|.+. |.+..+||+.+|.|+++|.++|. T Consensus 6 lt~eq~~-~a~~l~~~-G~s~~~iA~~~gVSr~TiYr~l~ 43 (52) T 1jko_C 6 INKHEQE-QISRLLEK-GHPRQQLAIIFGIGVSTLYRYFP 43 (52) T ss_dssp SCTTHHH-HHHHHHHT-TCCHHHHHHTTSCCHHHHHHHSC T ss_pred CCHHHHH-HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999999-99999987-99899999998979999999845 No 47 >>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} (A:) Probab=91.61 E-value=0.18 Score=29.11 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHH Q ss_conf 9999999852101110467999974--33787786565654 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVG--KSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G--~s~s~V~~~LrLl~ 177 (300) .-+..++++..+.|+||+++|+.+| .|+++|+++.+=-. T Consensus 8 ~ig~~ik~~R~~~gltq~~lA~~~G~~vs~~~is~~E~g~~ 48 (71) T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDR 48 (71) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCC T ss_conf 99999999999862638999999778738999999997001 No 48 >>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} (A:) Probab=91.53 E-value=0.17 Score=29.26 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=29.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++++..+.|+||+++|+++|.|+++|+++-+ T Consensus 5 g~~lr~~R~~~glt~~elA~~~gis~~~is~~E~ 38 (130) T 3fym_A 5 GEALKGRRERLGMTLTELEQRTGIKREMLVHIEN 38 (130) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999999699999999882989999999985 No 49 >>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} (A:) Probab=91.37 E-value=0.16 Score=29.40 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=29.1 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565654 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .++++....|+||+++|+++|.|+++++++.+=.. T Consensus 14 ~ik~~R~~~gltq~~lA~~~gis~~~is~~e~g~~ 48 (76) T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQXGKSENTISRWCSNKS 48 (76) T ss_dssp CHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSS T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCH T ss_conf 99999999599899997664622588888850210 No 50 >>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} (A:) Probab=90.84 E-value=0.051 Score=32.55 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=31.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565435 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +..++++....|+||+++|+++|.|+++|+++-+=..-| T Consensus 3 g~~ik~~R~~~gltq~eLA~~~gis~~~is~~E~G~~~p 41 (158) T 2p5t_A 3 GKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSV 41 (158) T ss_dssp --------------------------------------- T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 899999999849999999999796999999998699899 No 51 >>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} (A:) Probab=90.73 E-value=0.32 Score=27.39 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=28.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHH Q ss_conf 101110467999974337877865656-5435-89999876 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRI-LKLP-SSVREMIR 187 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrL-l~L~-~~i~~~l~ 187 (300) ...|+||+++|+++|.|+++|+++.+= ...| -+....+. T Consensus 24 ~r~g~tq~~LA~~~gis~~~is~ie~G~~~~ps~~~l~~ia 64 (86) T 2ofy_A 24 ARGDXSXVTVAFDAGISVETLRKIETGRIATPAFFTIAAVA 64 (86) T ss_dssp HHTTSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHH T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 99808999999997078999999982986668999999999 No 52 >>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} (A:) Probab=90.51 E-value=0.37 Score=27.01 Aligned_cols=119 Identities=16% Similarity=0.063 Sum_probs=67.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH---H Q ss_conf 899999998521011104679999743-378778656565435899998764210167777764010046899997---4 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGK-SRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVI---V 213 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~-s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~I---i 213 (300) -|.+..+..++. .|.|..+||..+|. |++|+.+.+ +-.|+..+.+..+.... ...+++.+ + T Consensus 18 ~e~~~~i~~~~~-~G~s~~~Ia~~~gips~~Tl~~W~---~~~~ef~e~~~~ak~~~-----------~~~v~~~l~~~A 82 (143) T 3hef_A 18 PEVADDICSLLS-SGESLLKVCKRPGMPDKSTVFRWL---AKHEDFRDKYAKATEAR-----------ADSIFEEIFEIA 82 (143) T ss_dssp HHHHHHHHHHHH-TTCCHHHHHTSTTCCCHHHHHHHT---TTCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-CCCCHHHHHHCCCCCCHHHHHHHH---HHCHHHHHHHHHHHHHH-----------HHHHHHHHHHHH T ss_conf 999999999998-798799998727999689999999---81789999999999999-----------999999999999 Q ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCC-CEEEEEEECCHHHHH Q ss_conf 22247789999997641022222234566556897899999999997398799971798-228999858989999 Q gi|254780805|r 214 SKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNN-KGQFCIKYETNEQLK 287 (300) Q Consensus 214 ~~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~~~~~-kGkI~I~f~s~eeLe 287 (300) .+..--..+.+.++ ......+--|.+...+..|.|+++.+.+. .|-|.+.-..+++|+ T Consensus 83 ~~~~~~~~~~~~~~----------------~~~~A~~f~L~~~~p~~y~dk~~~e~tg~~g~~i~~~~~~~~~l~ 141 (143) T 3hef_A 83 DNAIPDAAEVAKAR----------------LRVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMSTLF 141 (143) T ss_dssp HTCCSSHHHHHHHH----------------HHHHHHHHHHHHHSHHHHSCCEEEEEECGGGSCCCEEEC------ T ss_pred HCCCCCHHHHHHHH----------------HHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCEEEEECCCHHHC T ss_conf 60113527887777----------------888899999972681313654320035789986588732405332 No 53 >>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} (A:1-73) Probab=89.52 E-value=1.1 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=30.6 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|+|-+....+.+.. .|+|..+||+.+|.|.++|.+++. T Consensus 21 ~~L~~~~r~v~~l~~~--~g~s~~eIA~~lgis~~~v~~~l~ 60 (73) T 1s7o_A 21 ALLTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIK 60 (73) T ss_dssp GGSCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 4399999999999999--731299999998979999999999 No 54 >>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} (A:) Probab=88.86 E-value=0.091 Score=30.93 Aligned_cols=23 Identities=4% Similarity=0.050 Sum_probs=16.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+||.+||+++|.||++|+++|. T Consensus 34 ~~tQ~eIA~~l~isr~~Vsr~l~ 56 (345) T 2o0m_A 34 PIGRRSLSETXGITERVLRTETD 56 (345) T ss_dssp ----------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 96899999884997889999999 No 55 >>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:) Probab=88.76 E-value=0.41 Score=26.76 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=27.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011104679999743378778656565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .+...+..++.+..++|+.+|.||+++.++|+=. T Consensus 55 ~i~~~L~~~~gn~~~aA~~LGisR~TL~rklkk~ 88 (91) T 1ntc_A 55 LLTTALRHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91) T ss_dssp HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999949949999999798999999999987 No 56 >>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:1-53) Probab=88.54 E-value=0.61 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=29.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+..|.|. +.-+.+ .|++..|||+++|+|+-.|+|+|. T Consensus 6 ~Lt~~E~~~-I~~~~~-~g~s~~eIArki~RS~~vi~nylk 44 (53) T 1u78_A 6 ALSDTERAQ-LDVMKL-LNVSLHEMSRKISRSRHCIRVYLK 44 (53) T ss_dssp CCCHHHHHH-HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHH-HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 799999999-999999-799999999998958999999999 No 57 >>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} (A:) Probab=86.80 E-value=0.99 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=31.9 Q ss_pred CCCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852-1-0111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLI-S-EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~-~-~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-++..-..+.. . ..++|+.+||+.+|.|+++|++.+. T Consensus 17 ~~L~~~~r~vl~lry~l~~~e~~s~~EIA~~lgis~~~V~~~~~ 60 (87) T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87) T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 64999999999997177899956699999996988999999999 No 58 >>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} (A:1-67) Probab=86.70 E-value=1 Score=24.23 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=38.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565654358999987642 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKE 189 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~ 189 (300) |..|+.-|.-..++++-+--.+++.+||+.+|.+++||+..++ =-+.+...+..+ T Consensus 5 r~~ltl~eK~~ii~~~e~g~~~s~~~iAr~~gi~~STis~IlK---~k~~i~~~~~~~ 59 (67) T 1hlv_A 5 RRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK---NKRAILASERKY 59 (67) T ss_dssp SCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH---THHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH---HHHHHHHHHHHH T ss_conf 1301278774899998739751100677750898488999996---048887665454 No 59 >>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} (A:117-194) Probab=86.11 E-value=0.87 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.001 Sum_probs=30.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 210489999999852101110467999974337877865656 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .|+|-+....+.... .|+|..+||+.+|.|.++|.+++.- T Consensus 24 ~L~~~~r~i~~l~~~--~~~s~~eIA~~lgis~~tv~~~l~r 63 (78) T 1or7_A 24 SLPEDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIFR 63 (78) T ss_dssp HSCHHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHHH T ss_pred HCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 099999999999998--0979999999989499999999999 No 60 >>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122) Probab=86.08 E-value=0.73 Score=25.12 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=28.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565654 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) -+..|.+..+.+..+|++.+|.|+++|+++|+.|. T Consensus 20 Il~~L~~~~~~~v~eL~~~l~is~s~vs~HL~~L~ 54 (95) T 1u2w_A 20 ITYALCQDEELCVCDIANILGVTIANASHHLRTLY 54 (95) T ss_dssp HHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999887990699999888457007999999999 No 61 >>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} (A:) Probab=85.92 E-value=0.92 Score=24.47 Aligned_cols=40 Identities=8% Similarity=0.074 Sum_probs=29.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10489999999852101110467999974337877865656 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) +.-+|... +...++.+++...++|+.+|.|++|+.+.|+= T Consensus 38 ~~~~E~~~-I~~aL~~~~gn~~~aA~~Lgisr~TL~rklkk 77 (81) T 1umq_A 38 ADRVRWEH-IQRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81) T ss_dssp HHHHHHHH-HHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999-99999999830999999969899999999997 No 62 >>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122) Probab=85.87 E-value=0.97 Score=24.32 Aligned_cols=31 Identities=29% Similarity=0.440 Sum_probs=25.9 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.+...+..+||+.+|.|+++|++.|+.|. T Consensus 10 ~L~~~~~~~~ela~~l~~s~stvs~HL~~L~ 40 (78) T 1r1t_A 10 LLARSELCVGDLAQAIGVSESAVSHQLRSLR 40 (78) T ss_dssp HHTTCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9981995699999998919889999999999 No 63 >>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} (A:173-236) Probab=85.51 E-value=1.2 Score=23.69 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=30.2 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+.|+|-|..... ++.+ |++..+||+.+|.|..+|.++++ T Consensus 1 ~~~LT~~E~~vl~--l~~~-G~~~~eIA~~l~iS~~tV~~~~~ 40 (64) T 2q0o_A 1 KQMLSPREMLCLV--WASK-GKTASVTANLTGINARTVQHYLD 40 (64) T ss_dssp GGSCCHHHHHHHH--HHHT-TCCHHHHHHHHCCCHHHHHHHHH T ss_pred CCCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 6779999999999--9875-99999999995999999999999 No 64 >>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66) Probab=85.25 E-value=1.4 Score=23.33 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=30.1 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852101110467999974337877865656 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ..|+.+|...- .-|.+....+..+||+.+|.|+++|.++++= T Consensus 13 ~~ld~~D~~IL-~~L~~~~r~s~~ela~~lgls~~tv~~ri~~ 54 (66) T 2ia0_A 13 IHLDDLDRNIL-RLLKKDARLTISELSEQLKKPESTIHFRIKK 54 (66) T ss_dssp -CCCHHHHHHH-HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHH T ss_pred CCCCHHHHHHH-HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 76389999999-9999848999999999989099999999999 No 65 >>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} (A:) Probab=85.18 E-value=0.83 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=26.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH Q ss_conf 1046799997433787786565----65435899998764 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR----ILKLPSSVREMIRK 188 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr----Ll~L~~~i~~~l~~ 188 (300) +|..++|+..|.|+++|++.|. -...+++.++.|.+ T Consensus 1 vTi~dIA~~agvS~~TVSrvln~~~~~~~vs~~tr~rI~~ 40 (65) T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMA 40 (65) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 9899999998939999999977989878649999999999 No 66 >>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} (A:1-76) Probab=85.00 E-value=1.2 Score=23.64 Aligned_cols=41 Identities=17% Similarity=0.113 Sum_probs=30.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852101110467999974337877865656 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ..|+|-++..-+-+.. .|+|.++||+.+|.|.++|.++++- T Consensus 24 ~~L~~~~r~il~l~~~--~g~s~~EIA~~l~is~~~v~~~~~r 64 (76) T 1xsv_A 24 SLLTNKQRNYLELFYL--EDYSLSEIADTFNVSRQAVYDNIRR 64 (76) T ss_dssp GGSCHHHHHHHHHHHT--SCCCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 6688999999999998--2865999999989699999999999 No 67 >>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56) Probab=84.81 E-value=1.3 Score=23.53 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=29.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+++|... +..|......+..+||+.+|.|+++|.++++ T Consensus 4 ~lD~~D~~I-l~~Lq~~~r~~~~elA~~lg~S~~tv~~Ri~ 43 (56) T 2w25_A 4 ALDDIDRIL-VRELAADGRATLSELATRAGLSVSAVQSRVR 43 (56) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 572999999-9999984899999999998909999999999 No 68 >>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} (A:90-239) Probab=84.66 E-value=1.3 Score=23.55 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=28.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-+.-..+.+.. .|+|.++||+.+|.|.++|..++. T Consensus 97 ~~L~~~~r~vi~l~~~--~g~s~~EIA~~lgis~~tV~~~l~ 136 (150) T 1rp3_A 97 SKLPEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA 136 (150) T ss_dssp TTSCHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 3799999999999926--999999999998959999999999 No 69 >>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} (A:) Probab=84.43 E-value=1.4 Score=23.22 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=30.5 Q ss_pred CCCCHHHHHHHHHHH-HHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985-210-111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQL-ISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l-~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-|...-.-+. ++. .++|.+++|+.+|.|+++|++... T Consensus 9 ~~L~erer~vi~lrygl~~~~~~t~~EIa~~lgiS~~~Vr~~~~ 52 (73) T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73) T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 70999999999998188999987899999998979999999999 No 70 >>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:) Probab=84.32 E-value=0.93 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=28.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99852101110467999974337877865656543 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) +..|.+..+++..++|+.+|.|+++||..|+|.+. T Consensus 33 L~~L~~~~~~~v~ela~~l~~s~stvS~HLkL~~a 67 (99) T 2zkz_A 33 VNELYKHKALNVTQIIQILKLPQSTVSQHLCKXRG 67 (99) T ss_dssp HHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBT T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99997289946999999988698899999999982 No 71 >>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64) Probab=84.27 E-value=1.3 Score=23.52 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=25.6 Q ss_pred HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521-0111046799997433787786565654 Q gi|254780805|r 143 GYEQLIS-EYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 143 ~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+-+++. .-.+|.+++|+.+|.|+++|.+.+.-|. T Consensus 9 ~Il~~L~~~~~is~~ela~~l~vS~~Ti~rdi~~L~ 44 (64) T 1bia_A 9 KLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR 44 (64) T ss_dssp HHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999998569946899999997989999999999999 No 72 >>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:) Probab=84.25 E-value=1.6 Score=22.85 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=36.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 22104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) -+|++.+...-+.-+....++|+.+||+.+|.++++|++.+ +.+...|-| T Consensus 17 ~~ls~~~~~vll~~l~~~~~~t~~eLa~~l~i~~~tvs~~l---------~~L~~~glI 66 (109) T 2d1h_A 17 YKITDTDVAVLLKXVEIEKPITSEELADIFKLSKTTVENSL---------KKLIELGLV 66 (109) T ss_dssp HTCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH---------HHHHHCCCC T ss_conf 79599999999999984969899999999788723499999---------999987986 No 73 >>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} (A:46-98) Probab=84.13 E-value=1.2 Score=23.77 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=31.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10489999999852101110467999974337877865656543 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) +..+|... +.+.+..+++.+.+.|+.+|.||+++.+.|+-..+ T Consensus 10 ~~~~E~~~-I~~aL~~~~gn~s~aA~~Lgisr~tL~rklkk~~i 52 (53) T 1eto_A 10 LAEVEQPL-LDMVMQYTLGNQTRAALMMGINRGTLRKKLKKYGM 52 (53) T ss_dssp HHHHHHHH-HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC T ss_pred HHHHHHHH-HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 99999999-99999992998999999979899999999998585 No 74 >>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} (B:) Probab=84.10 E-value=1.8 Score=22.63 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.8 Q ss_pred CCCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852-1-0111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLI-S-EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~-~-~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-+.-.-.-+.. + ..|+|.++||+.+|.|+++|++.+. T Consensus 17 ~~Lp~~~r~il~lry~~~~~~~~t~~eIa~~lgiS~~~V~~~~~ 60 (81) T 1tlh_B 17 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 60 (81) T ss_dssp TTCCHHHHHHHHHHTCCCTTSCCCHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 64999999999998178988756699999998978999999999 No 75 >>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A (A:1-91) Probab=83.88 E-value=1.6 Score=22.95 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=36.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) ++|++.+.|..++..+..++++|.--|+. +|+|+.+++..|+ T Consensus 2 e~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rsQGtlSdLL~ 44 (91) T 2d5v_A 2 EEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLR 44 (91) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHC T ss_conf 6248999999999999876875999998700578517778863 No 76 >>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} (A:149-195) Probab=83.87 E-value=1.5 Score=23.08 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=27.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-|.... +++.. |+|..++|+.+|.|..+|.++++ T Consensus 2 LT~rE~~vl--~~l~~-G~s~~eIA~~L~iS~~TV~~~~~ 38 (47) T 3c3w_A 2 LTDQERTLL--GLLSE-GLTNKQIADRMFLAEKTVKNYVS 38 (47) T ss_dssp SCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 899999999--99995-79999999997887889999999 No 77 >>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99) Probab=83.66 E-value=1.4 Score=23.32 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=27.8 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565654 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) -+..|.+..++|..+||+.+|.|+++|+..|+.|. T Consensus 20 Il~~L~~~~~~~~~ela~~l~is~~tvs~HL~~L~ 54 (90) T 3cuo_A 20 ILCMLSGSPGTSAGELTRITGLSASATSQHLARMR 54 (90) T ss_dssp HHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999769994199999998929878999999999 No 78 >>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183) Probab=83.61 E-value=1.2 Score=23.76 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=25.1 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -..+|.++ |+...+||+.+|.+|++|.+.|. T Consensus 9 ~V~~L~~~-G~g~t~IAk~LgI~R~sVYriL~ 39 (42) T 1gdt_A 9 AVLNMWQQ-GLGASHISKTMNIARSTVYKVIN 39 (42) T ss_dssp HHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999987-99999999998929999999997 No 79 >>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} (A:) Probab=83.29 E-value=1.1 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=32.5 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCC Q ss_conf 998521011104679999743378778656565435899---9987642101 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSV---REMIRKEEIS 192 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i---~~~l~~~~is 192 (300) +++.++.+| +|.++|+++|.|+++|++-+.=-.+|++. .+.+-.|.++ T Consensus 4 l~~aI~~~G-~q~~lA~~~Gvs~~aV~~w~~g~~ip~~~~~~Ie~~T~G~Vt 54 (79) T 3bd1_A 4 IDIAINKLG-SVSALAASLGVRQSAISNWRARGRVPAERCIDIERVTNGAVI 54 (79) T ss_dssp HHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCGGGHHHHHHHTTTSSC T ss_pred HHHHHHHHC-CHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC T ss_conf 999999958-999999991998999999880699998999999999578541 No 80 >>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} (A:) Probab=82.69 E-value=3.3 Score=20.89 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=29.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|++-|.-. + +++-+ |+|..+||..+|.|..+|.++++ T Consensus 20 ~~Lt~rE~~V-l-~ll~~-G~s~~~IA~~L~iS~~TV~~~~~ 58 (82) T 1je8_A 20 NQLTPRERDI-L-KLIAQ-GLPNKXIARRLDITESTVKVHVK 58 (82) T ss_dssp GGSCHHHHHH-H-HHHTT-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHH-H-HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 4089999999-9-99992-89999997684888999999999 No 81 >>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53) Probab=82.66 E-value=1.1 Score=23.92 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=23.9 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111046799997433787786565 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-|.+....+..++|+.+|.|+++|.++++ T Consensus 10 ~~L~~d~r~~~~elA~~lgvS~~tv~~ri~ 39 (53) T 2pn6_A 10 KILQYNAKYSLDEIAREIRIPKATLSYRIK 39 (53) T ss_dssp HHHTTCTTSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999985999999999998919999999999 No 82 >>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} (A:254-304) Probab=82.47 E-value=1.3 Score=23.42 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-+|.. .+.+.++.+++...+.|+.+|.|++++.+.|+ T Consensus 12 l~~~E~~-~I~~aL~~~~Gn~~~aA~~LGisr~TL~rklk 50 (51) T 1ojl_A 12 LVDVEKE-VILAALEKTGGNKTEAARQLGITRKTLLAKLS 50 (51) T ss_dssp HHHHHHH-HHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC T ss_pred HHHHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999-99999999299899999998889999999867 No 83 >>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} (A:1-105,A:403-429) Probab=82.39 E-value=1.8 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=30.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 999998521011104679999743378778656565435899998764210 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) ..-+.-+.+....|..+||+.+|.|+++|+++|+ +++..|-| T Consensus 42 ~~IL~lL~~~g~~T~~eLA~~lgLS~~TVs~~L~---------~L~~~GlI 83 (132) T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITR---------ELIDAHLI 83 (132) T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSE T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCE T ss_conf 9999999985991899999887969999999999---------99988968 No 84 >>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} (A:199-258) Probab=82.03 E-value=3.5 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.8 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++-. |+|..+||+.+|.|.++|.++++ T Consensus 10 ~~~~-G~t~~eIA~~l~is~~TV~~~~~ 36 (60) T 3clo_A 10 CIRK-GLSSKEIAATLYISVNTVNRHRQ 36 (60) T ss_dssp HHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9985-99999999995999999999999 No 85 >>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77) Probab=81.93 E-value=2.3 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=28.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+.+|... +..|......+..+||+.+|.|+++|.++++ T Consensus 24 ~ld~~D~~I-l~~Lq~d~r~s~~ela~~lgis~~tv~~ri~ 63 (77) T 2e1c_A 24 PLDEIDKKI-IKILQNDGKAPLREISKITGLAESTIHERIR 63 (77) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 847999999-9999983898999999998819899999999 No 86 >>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} (A:) Probab=81.73 E-value=2.2 Score=22.06 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=27.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|.|-+...-+-+. ..|+|.++||+.+|.|.++|..++. T Consensus 15 ~L~~~~r~i~~l~~--~~~~s~~eIA~~l~is~~tV~~~l~ 53 (70) T 2o8x_A 15 DLTTDQREALLLTQ--LLGLSYADAAAVCGCPVGTIRSRVA 53 (70) T ss_dssp SSCHHHHHHHHHHH--TSCCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHHHHHHH--HHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 79999999989999--9584799999997989999999999 No 87 >>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:) Probab=81.37 E-value=1.5 Score=23.18 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=31.3 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04899999998521011104679999743378778656565435 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) ..+|... +...+..+++.....|+.+|.|++++.+.|+=..+. T Consensus 17 ~~~Er~~-i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk~gi~ 59 (63) T 3e7l_A 17 KEFEKIF-IEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNIR 59 (63) T ss_dssp HHHHHHH-HHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTCC T ss_pred HHHHHHH-HHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC T ss_conf 9999999-999999919989999999895999999999994899 No 88 >>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ... (A:189-260) Probab=81.00 E-value=2 Score=22.25 Aligned_cols=23 Identities=48% Similarity=0.715 Sum_probs=20.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+||+++|..+|.||.+|++.|+ T Consensus 29 ~lt~~~lA~~lg~sr~tvsr~l~ 51 (72) T 3kcc_A 29 KITRQEIGQIVGCSRETVGRILK 51 (72) T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 68999999997998999999999 No 89 >>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:) Probab=80.85 E-value=1.2 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=29.2 Q ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--HHHHHHHHHHHH Q ss_conf 10489999999852101-1104679999743--378778656565 Q gi|254780805|r 135 LNPLEEALGYEQLISEY-GYTQNDIGSIVGK--SRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~--s~s~V~~~LrLl 176 (300) |+|.+.+ +-.++.+. ..|+.+||+.+|. |+++|+.+|+-| T Consensus 11 ~~ptd~~--ILe~L~~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L 53 (111) T 3b73_A 11 XTIWDDR--ILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKL 53 (111) T ss_dssp CCHHHHH--HHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHH T ss_pred CCHHHHH--HHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 4544899--999998737888889886136683388999999999 No 90 >>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82) Probab=80.83 E-value=2 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=26.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +++.+...+..++|+.+|.|+++|+.+|+.|. T Consensus 32 ~~L~~~~~~~~ela~~l~is~~tvs~HL~~L~ 63 (82) T 2kko_A 32 DLLAQGERAVEAIATATGMNLTTASANLQALK 63 (82) T ss_dssp HHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99981997899999998909999999999999 No 91 >>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79) Probab=80.78 E-value=2.7 Score=21.51 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=30.3 Q ss_pred CCCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 210489999999852-1011-104679999743378778656565 Q gi|254780805|r 134 DLNPLEEALGYEQLI-SEYG-YTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 134 dl~p~e~A~~~~~l~-~~~~-~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .|+..+.-..+-+++ +.-+ +|.++||+.||.|++||.+.|.-| T Consensus 16 ~m~~~~R~~~Il~~L~~~~~~vt~~eLa~~l~VS~~Ti~rdl~~L 60 (79) T 1j5y_A 16 KTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYL 60 (79) T ss_dssp HHHHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 030999999999999986997769999999797999999999999 No 92 >>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} (A:118-202) Probab=80.63 E-value=2.1 Score=22.16 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=27.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 1104679999743378778656565435899998764210167777 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHAR 197 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar 197 (300) .+||++||..+|.|+.+|++.|. .+-.+|-|...+.+ T Consensus 29 ~lt~~~lA~~lg~sr~tvsr~L~---------~L~~~glI~~~~~~ 65 (85) T 2zcw_A 29 KATHDELAAAVGSVRETVTKVIG---------ELAREGYIRSGYGK 65 (85) T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEEETTE T ss_pred CCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCCE T ss_conf 89899999887988999999999---------99988999965999 No 93 >>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} (A:174-234) Probab=80.61 E-value=2.3 Score=21.96 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=26.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|.|.... +++-+ |+|..+||+.+|.|.++|.+++. T Consensus 1 LT~rE~~vl--~l~~~-G~s~~eIA~~L~is~~TV~~~~~ 37 (61) T 1l3l_A 1 LDPKEATYL--RWIAV-GKTXEEIADVEGVKYNSVRVKLR 37 (61) T ss_dssp CCHHHHHHH--HHHTT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 998999999--99975-99999999996989999999999 No 94 >>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64) Probab=80.54 E-value=2.6 Score=21.60 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=32.8 Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210--11104679999743378778656565 Q gi|254780805|r 135 LNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +..++.|..+-+.+.+ .++|..+||+.+|.+++++.++|.-| T Consensus 4 ~~s~~r~l~iL~~l~~~~~~~t~~eia~~~glp~st~~Rll~tL 47 (64) T 1mkm_A 4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL 47 (64) T ss_dssp CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 64999999999999728999899999998791999999999999 No 95 >>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} (A:136-207) Probab=80.06 E-value=2.3 Score=21.89 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=21.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1110467999974337877865656 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) +.+|+++||..+|.|+.+|++.|.- T Consensus 28 ~~~t~~elA~~lg~sr~tvsr~l~~ 52 (72) T 2oz6_A 28 IKITRQEIGRIVGCSREMVGRVLKS 52 (72) T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 0778999999979999999999999 No 96 >>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77) Probab=79.95 E-value=2.1 Score=22.13 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=25.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +++.+...+..++|+.+|.|+++|+..|+.|. T Consensus 22 ~~L~~~~~~~~ela~~l~is~stvs~HL~~L~ 53 (77) T 2p4w_A 22 FLLTKRPYFVSELSRELGVGQKAVLEHLRILE 53 (77) T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99981998899999998909999999999999 No 97 >>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55) Probab=79.94 E-value=1.6 Score=22.97 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=27.0 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+.+|... +..|.+....+..+||+.+|.|+++|.++++ T Consensus 3 lD~~D~~I-L~~L~~~~r~s~~eia~~lgis~~tv~~ri~ 41 (55) T 2cfx_A 3 LDQIDLNI-IEELKKDSRLSMRELGRKIKLSPPSVTERVR 41 (55) T ss_dssp CCHHHHHH-HHHHHHCSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 78899999-9999984899999999998858889999999 No 98 >>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53) Probab=79.94 E-value=1.8 Score=22.56 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=24.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011104679999743378778656565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .|.+....+..+||+.+|.|+++|.++++=+ T Consensus 11 ~L~~dar~s~~elA~~lgis~~~v~~Ri~~L 41 (53) T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKX 41 (53) T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9998589999999999891999999999999 No 99 >>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58) Probab=79.81 E-value=1.5 Score=23.17 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=27.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+..|... +..|.+..-.+..++|+.+|.|+++|.++++ T Consensus 7 ld~~D~~I-l~~L~~~~r~s~~ela~~lgis~~tv~~ri~ 45 (58) T 2dbb_A 7 LDRVDMQL-VKILSENSRLTYRELADILNTTRQRIARRID 45 (58) T ss_dssp CCHHHHHH-HHHHHHCTTCCHHHHHHHTTSCHHHHHHHHH T ss_pred HHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 60999999-9999885999999999998969999999999 No 100 >>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646} (A:1-89) Probab=79.78 E-value=0.75 Score=25.04 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=33.6 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0489999999852101110467999974337877865656543 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) +...-+..++.+....|+||.++|+ .|.|+++|+++.+=..- T Consensus 2 ~~~~ig~~lk~~R~~~glsq~ela~-~gis~~~is~~E~g~~~ 43 (89) T 2qfc_A 2 QAEKLGSEIKKIRVLRGLTQKQLSE-NICHQSEVSRIESGAVY 43 (89) T ss_dssp -CHHHHHHHHHHHHHHTCCTTTTTT-TTSCHHHHHHHHTSSSC T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHH-HCCCHHHHHHHHCCCCC T ss_conf 8799999999999985999999967-45899999999889999 No 101 >>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} (A:8-76) Probab=79.67 E-value=1.7 Score=22.69 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=26.9 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 21011104679999743378778656-5654358999987 Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANIL-RILKLPSSVREMI 186 (300) Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~L-rLl~L~~~i~~~l 186 (300) ..+-|+|-++||+.+|+|..||+..+ .-..+|++--+.| T Consensus 15 K~~kgltw~~iA~~iG~s~v~~aaa~lGQ~~~~~~~A~~l 54 (69) T 1dw9_A 15 KAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLV 54 (69) T ss_dssp HHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 9983999999999969999999999827777999999999 No 102 >>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:) Probab=79.51 E-value=1.8 Score=22.65 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.5 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.+...+..+||+.+|.|+++|++.|+.|. T Consensus 29 ~L~~~~~~v~eLa~~l~~s~stvS~HL~~L~ 59 (118) T 2jsc_A 29 ALLDGVCYPGQLAAHLGLTRSNVSNHLSCLR 59 (118) T ss_dssp HHHTTCCSTTTHHHHHSSCHHHHHHHHHHHT T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9981994799999998856656999999998 No 103 >>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} (A:) Probab=79.39 E-value=4.3 Score=20.17 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=29.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-|.-.. +++-+ |+|..+||..+|.|..+|.++++ T Consensus 28 ~~LT~rE~~vl--~~l~~-G~t~~eIA~~L~is~~TV~~~~~ 66 (91) T 2rnj_A 28 EMLTEREMEIL--LLIAK-GYSNQEIASASHITIKTVKTHVS 66 (91) T ss_dssp GGCCSHHHHHH--HHHHT-TCCTTHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 41699999999--99993-89999999897979989999999 No 104 >>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57) Probab=79.35 E-value=1.8 Score=22.54 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=27.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+.+|... +..|.+..-.+..++|+.+|.|+++|.++++ T Consensus 4 ~ld~~D~~I-L~~L~~d~r~s~~elA~~lgvS~~tv~~ri~ 43 (57) T 2cyy_A 4 PLDEIDKKI-IKILQNDGKAPLREISKITGLAESTIHERIR 43 (57) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHHCSCHHHHHHHHH T ss_pred CHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 770999999-9999974899999999998929899999999 No 105 >>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86) Probab=79.32 E-value=2.6 Score=21.56 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=34.8 Q ss_pred CCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210--11104679999743378778656565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .....++.+..+-+++.+ .+++..+||+.+|.+++++.++|.-| T Consensus 15 ~~~~s~~r~l~IL~~l~~~~~~~tl~eia~~lg~~~st~~RlL~tL 60 (86) T 2ia2_A 15 DYVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTL 60 (86) T ss_dssp -CCHHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7216999999999999737999699999999793999999999999 No 106 >>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} (A:1-85) Probab=79.29 E-value=1.7 Score=22.76 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=25.8 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011104679999743378778656565 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .+++....+|..|||+.+|.|+++|++.|+-| T Consensus 26 l~lL~~g~~t~~eLa~~~gls~~tv~~~l~~L 57 (85) T 2hoe_A 26 LKRIXKSPVSRVELAEELGLTKTTVGEIAKIF 57 (85) T ss_dssp HHHHHHSCBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99998199299999988795999999999999 No 107 >>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} (A:) Probab=79.28 E-value=2.6 Score=21.57 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=37.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-74337877865656 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRI 175 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrL 175 (300) ++|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+= T Consensus 25 ~~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rsQGtlSdLL~~ 68 (111) T 1wh8_A 25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSR 68 (111) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHC T ss_conf 52689999999999999858329999999980082789999838 No 108 >>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* (A:152-237) Probab=78.95 E-value=2 Score=22.26 Aligned_cols=24 Identities=13% Similarity=0.251 Sum_probs=21.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 111046799997433787786565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+|+++||..+|.++.+|++.|+ T Consensus 26 ~~~s~~~lA~~lG~sr~tvsr~l~ 49 (86) T 3fx3_A 26 LPYDKXLIAGRLGXKPESLSRAFS 49 (86) T ss_dssp CCSCTHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 898999999897998999999999 No 109 >>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60) Probab=78.79 E-value=1.8 Score=22.57 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=28.0 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+++|... +..|.+....+..+||+.+|.|+++|.++++ T Consensus 8 lD~~D~~I-L~~Lq~n~r~s~~elA~~lgis~~tv~~ri~ 46 (60) T 2p5v_A 8 LDKTDIKI-LQVLQENGRLTNVELSERVALSPSPCLRRLK 46 (60) T ss_dssp CCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 08999999-9999983699999999998979889999999 No 110 >>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} (A:129-215) Probab=78.75 E-value=3.2 Score=21.00 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|.|.... +++.. |+|-.+||+.+|.|..+|.++++ T Consensus 25 ~~Lt~~E~~vl--~l~~~-G~s~~eIA~~L~iS~~TV~~~~~ 63 (87) T 1a04_A 25 NQLTPRERDIL--KLIAQ-GLPNKMIARRLDITESTVKVHVK 63 (87) T ss_dssp GGSCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHHH--HHHHC-CCCCCEEHHHHCCCHHHHHHHHH T ss_conf 64898999999--99984-99844018986875779999999 No 111 >>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} (A:179-227) Probab=78.70 E-value=1.3 Score=23.43 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=19.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +||+++|..+|.||.+|++.|. T Consensus 1 ltq~elA~~lG~sr~tvsR~l~ 22 (49) T 3dkw_A 1 VAKQLVAGHLSIQPETFSRIMH 22 (49) T ss_dssp SCTHHHHHHTTSCHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHH T ss_conf 8899998886998999999999 No 112 >>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:) Probab=78.57 E-value=2.6 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.7 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.....|..+||+.+|.|+++|++.|+.|. T Consensus 19 ~L~~g~~tv~eLa~~lgis~~tvS~HL~~L~ 49 (165) T 2vxz_A 19 LLADGCKTTSLIQQRLGLSHGRAKALIYVLE 49 (165) T ss_dssp HHTTCCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 9975450899999982650899999999998 No 113 >>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* (A:155-225) Probab=78.56 E-value=2.5 Score=21.70 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=29.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|.|....+ ++-. |+|..++|+.+|.|..+|.++++ T Consensus 5 ~LT~~E~~vl~--~~~~-G~s~~eIA~~l~is~~TV~~~~~ 42 (71) T 3klo_A 5 KLTKREQQIIK--LLGS-GASNIEIADKLFVSENTVKTHLH 42 (71) T ss_dssp TSCHHHHHHHH--HHTT-TCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 43178999999--9974-99799999997989999999999 No 114 >>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} (A:159-230) Probab=78.48 E-value=1.4 Score=23.39 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 111046799997433787786565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+|+++||..+|.|+.+|++.|+ T Consensus 28 ~~~t~~~lA~~lG~sr~tvsr~l~ 51 (72) T 3iwz_A 28 LRVSRQELARLVGCSREMAGRVLK 51 (72) T ss_dssp EECCHHHHHHHHTCCHHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHHH T ss_conf 177999999897988999999999 No 115 >>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120) Probab=78.36 E-value=3.5 Score=20.75 Aligned_cols=35 Identities=20% Similarity=0.132 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+.-+.+.-+.|+.+||+.+|.++++|++.++ T Consensus 4 q~~iL~~l~~~~~~t~~eia~~l~~~~~~vs~~i~ 38 (91) T 3g3z_A 4 LFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK 38 (91) T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999986994999999998978989999999 No 116 >>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94) Probab=78.28 E-value=3.7 Score=20.61 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+..+.+.-+.|+.+||+.+|.|++++++.++ T Consensus 7 ~~~vL~~l~~~~~~t~~~la~~~~~s~~~~s~~i~ 41 (66) T 2a61_A 7 QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVK 41 (66) T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH T ss_conf 99999999876998999999882989889999999 No 117 >>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:) Probab=78.18 E-value=3.6 Score=20.64 Aligned_cols=42 Identities=24% Similarity=0.182 Sum_probs=28.2 Q ss_pred CCHHHHH--HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999--9999852101-1104679999743378778656565 Q gi|254780805|r 135 LNPLEEA--LGYEQLISEY-GYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~A--~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) |+|.++. ..+..+.++. ..++.+||+.+|.++++|++.++-| T Consensus 2 Lt~~~e~yL~~I~~l~~~~~~v~~~diA~~l~Vs~~sV~~~i~~L 46 (142) T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL 46 (142) T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 896099999999999963899769999999698878999999999 No 118 >>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} (C:148-250) Probab=78.13 E-value=2.7 Score=21.48 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 1104679999743378778656565435899998764210167 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) -+|+++||..+|.|+.+|++.| +++-.+|-|..+ T Consensus 30 ~lt~~~LA~~lG~sr~tvsr~l---------~~L~~~giI~~~ 63 (103) T 3e6c_C 30 PLSQKSIGEITGVHHVTVSRVL---------ASLKRENILDKK 63 (103) T ss_dssp CCCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEEEC T ss_pred CCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEEC T ss_conf 8689999989799899999999---------999988989964 No 119 >>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* (A:148-227) Probab=77.85 E-value=1.7 Score=22.69 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=26.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 111046799997433787786565654358999987642101677 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGH 195 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh 195 (300) +.+|+++||..+|.|+.+|++.|+ .+-.+|-|.... T Consensus 29 ~~~t~~~la~~lg~sr~tvsr~L~---------~l~~~glI~~~~ 64 (80) T 3d0s_A 29 HDLTQEEIAQLVGASRETVNKALA---------DFAHRGWIRLEG 64 (80) T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSEEEET T ss_pred ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECC T ss_conf 478999999997999999999999---------999889899639 No 120 >>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99) Probab=77.82 E-value=3.5 Score=20.76 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+...+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 5 ~~~~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~i~ 40 (65) T 2nnn_A 5 TQWAALVRLGETGPCPQNQLGRLTAXDAATIKGVVE 40 (65) T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH T ss_conf 999999999987993999999987878531428999 No 121 >>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83) Probab=77.75 E-value=3 Score=21.22 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..| .+...+..+||+.+|.|+++|+..|+.|. T Consensus 17 L~~L-~~~~~~~~eia~~l~is~~tvS~HL~~L~ 49 (74) T 1uly_A 17 LKLL-RNKEXTISQLSEILGKTPQTIYHHIEKLK 49 (74) T ss_dssp HHHH-TTCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999-82996899999998909999999999998 No 122 >>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} (C:17-69) Probab=77.58 E-value=3.1 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011104679999743378778656565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .+.++ |++..++|++||.|+++|.+.+..- T Consensus 12 ~~~~~-G~s~~~aA~~f~VS~~tv~k~~~r~ 41 (53) T 1pdn_C 12 EMAAD-GIRPCVISRQLRVSHGCVSKILNRY 41 (53) T ss_dssp HHHHT-TCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99986-9999999998896899999999998 No 123 >>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79) Probab=77.55 E-value=2.4 Score=21.82 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=26.3 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..|.+ ...+..+||+.+|.|+++|+..|+.|. T Consensus 27 l~~L~~-~~~~~~ela~~l~is~~tvS~HL~~L~ 59 (79) T 2oqg_A 27 LTELGR-ADQSASSLATRLPVSRQAIAKHLNALQ 59 (79) T ss_dssp HHHHHH-SCBCHHHHHHHSSSCHHHHHHHHHHHH T ss_pred HHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999964-998744779886899889999998999 No 124 >>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106) Probab=77.51 E-value=3.9 Score=20.48 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+.-+...-+.|+.+||+.+|.+++++++.++ T Consensus 5 q~~vL~~l~~~~~~t~~ela~~~~~~~~t~s~~i~ 39 (64) T 2nyx_A 5 QFRTLVILSNHGPINLATLATLLGVQPSATGRXVD 39 (64) T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999857997999999998887877799997 No 125 >>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:) Probab=76.97 E-value=3.1 Score=21.07 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=26.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..|. +...+..+||+.+|.|+++|+..|+.|. T Consensus 32 l~~L~-~~~~~~~ela~~l~is~stvs~HL~~L~ 64 (106) T 1r1u_A 32 MELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK 64 (106) T ss_dssp HHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99998-3994699999887658668999999999 No 126 >>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} (A:) Probab=76.80 E-value=3.5 Score=20.77 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=37.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) +.++..|.|..++..+..++++|.--|+. +|+|+.+++.+|+ T Consensus 15 ~~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rSQGtlSdLL~ 57 (101) T 1wh6_A 15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS 57 (101) T ss_dssp SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH T ss_conf 1048999999999999994975999999998518278999984 No 127 >>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} (A:) Probab=76.73 E-value=4.2 Score=20.24 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHH-----HHHHHHHHHHHHHH Q ss_conf 4899999998521011-10467999974-----33787786565654 Q gi|254780805|r 137 PLEEALGYEQLISEYG-YTQNDIGSIVG-----KSRSHVANILRILK 177 (300) Q Consensus 137 p~e~A~~~~~l~~~~~-~t~~~lA~~~G-----~s~s~V~~~LrLl~ 177 (300) .-+.-..+..++.+.+ .||++|++.+. .|.+||++-|+-+. T Consensus 3 k~~R~~~I~~li~~~~i~sq~eL~~~L~~~G~~vtqaTisRDL~eL~ 49 (64) T 2p5k_A 3 KGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64) T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC T ss_conf 89999999999983898889999999998598663899987899919 No 128 >>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=76.65 E-value=3.5 Score=20.74 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=36.6 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) +.|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+ T Consensus 15 ~~ldT~~I~~~v~~eL~~~~I~Q~~Fa~~vL~rSQGtlSdLL~ 57 (101) T 1x2l_A 15 EQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA 57 (101) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH T ss_conf 5358999999999999994987999999998108178999983 No 129 >>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:66-117) Probab=76.37 E-value=2.6 Score=21.62 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=24.7 Q ss_pred HHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210-1110467999974337877865656 Q gi|254780805|r 144 YEQLISE-YGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 144 ~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ++.++++ --.|..+||+.++.|.++|.++|+= T Consensus 12 Lkalie~D~~~TtreiA~~Lnvs~~TI~~hLk~ 44 (52) T 3hot_A 12 LQALLDEDDAQTQKQLAEQLEVSQQAVSNRLRE 44 (52) T ss_dssp HHHHHHHCSCCCHHHHHHHTTSCHHHHHHHHHH T ss_pred HHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999664001899998856488899999997 No 130 >>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54) Probab=76.34 E-value=2.7 Score=21.45 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.8 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|.+....+..+||+.+|.|+++|.++++ T Consensus 12 ~L~~n~r~s~~~la~~lgiS~~tv~~ri~ 40 (54) T 1i1g_A 12 ILEKDARTPFTEIAKKLGISETAVRKRVK 40 (54) T ss_dssp HHHHCTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99985898999999998909999999999 No 131 >>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} (A:) Probab=76.21 E-value=3.5 Score=20.76 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=29.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-|.-.. +++-+ |+|..+||+.+|.|..+|.++++ T Consensus 34 ~Lt~rE~evl--~ll~~-G~t~~eIA~~L~iS~~TV~~~~~ 71 (99) T 1p4w_A 34 RLSPKESEVL--RLFAE-GFLVTEIAKKLNRSIKTISSQKK 71 (99) T ss_dssp SCCHHHHHHH--HHHHH-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8799999999--99992-89999999897969999999999 No 132 >>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170) Probab=76.18 E-value=2.6 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=24.9 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011104679999743378778656 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..-+...|+|+++.|+.+|.||..|+-|- T Consensus 5 ~F~~W~~r~gLsl~~AAeALGisrRmi~YY~ 35 (81) T 2auw_A 5 XFGDWXHRNNLSLTTAAEALGISRRXVSYYR 35 (81) T ss_dssp HHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999859999999999499999999997 No 133 >>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125) Probab=75.96 E-value=4.4 Score=20.12 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=30.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9999998521011104679999743378778656565435899998764210 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) ++..+..+.+..+.|+.+||+.+|.++++|++.+ ..+...|-| T Consensus 7 ~~~iL~~l~~~g~~t~~ela~~~~~~~~~vs~~i---------~~L~~~g~i 49 (78) T 3cjn_A 7 KXRALAILSAKDGLPIGTLGIFAVVEQSTLSRAL---------DGLQADGLV 49 (78) T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHH---------HHHHHHHHH T ss_conf 9999999984799899999999788833245889---------999998854 No 134 >>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131) Probab=75.67 E-value=2.5 Score=21.72 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +++.+...+..+||+.+|.|+++|+..|+.|. T Consensus 65 ~~L~~~~~~~~eLa~~l~is~~tvS~HL~~L~ 96 (131) T 3f6v_A 65 QLLTSGEQTVNNLAAHFPASRSAISQHLRVLT 96 (131) T ss_dssp HHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99982991799999998878778999875498 No 135 >>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75) Probab=75.65 E-value=4.6 Score=20.01 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=35.4 Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 02210489999999852101--1104679999743378778656565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEY--GYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~--~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +.....++.+..+-+.+.+. ++|..+||+.+|.++++|.++|.-| T Consensus 7 ~~~~~s~~r~l~iL~~l~~~~~~~t~~eia~~~glp~stv~Rll~tL 53 (75) T 2g7u_A 7 RDYIQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTL 53 (75) T ss_dssp CCCCHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 76136999999999999737999899999999791999999999999 No 136 >>1b4a_A Arginine repressor; helix turn helix; 2.50A {Bacillus stearothermophilus} (A:1-68) Probab=75.57 E-value=3.4 Score=20.85 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHH-----HHHHHHHHHHHHHH Q ss_conf 99999998521011-10467999974-----33787786565654 Q gi|254780805|r 139 EEALGYEQLISEYG-YTQNDIGSIVG-----KSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~~~-~t~~~lA~~~G-----~s~s~V~~~LrLl~ 177 (300) +.-..+..++.+.+ .||++|++.+. .|.+||++-|.-|. T Consensus 5 ~R~~~I~~ll~~~~~~tq~eL~~~L~~~G~~vSqaTisRDL~eL~ 49 (68) T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQ 49 (68) T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHC T ss_conf 999999999985897789999999998597523899999999815 No 137 >>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:1-46) Probab=75.51 E-value=2.6 Score=21.61 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=26.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 110467999974337877865656-543589999876 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR 187 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~ 187 (300) ..|..++|+..|.|.++|++.|.= -..+++..+.|. T Consensus 2 k~ti~dIA~~agvS~~TVSr~ln~~~~vs~~tr~~I~ 38 (46) T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVL 38 (46) T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 8689999999896999999997895999999999999 No 138 >>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:336-423) Probab=75.44 E-value=2.6 Score=21.63 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=34.2 Q ss_pred CCCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985-21-011104679999743378778656565435899998764 Q gi|254780805|r 133 KDLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRK 188 (300) Q Consensus 133 ~dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~ 188 (300) ..|+|-+...-.-+. +. -.|+|.++||..+|.|.++|..++. ..-..+++.+.. T Consensus 24 ~~L~~~~r~vi~lr~~~~~~e~~s~~eIA~~lgis~~tV~~~~~--ra~~~Lr~~l~~ 79 (88) T 2a6h_F 24 SKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIEN--KALRKLKYHESR 79 (88) T ss_dssp HSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHH--HHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH--HHHHHHHHCHHH T ss_conf 45999999999970667899860399999998969999999999--999998877776 No 139 >>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* (A:137-220) Probab=75.36 E-value=2.2 Score=22.01 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=21.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +.+|+.++|..+|.|+.+|++.|.-+ T Consensus 30 ~~~t~~eLA~~lg~sr~tvsr~l~~l 55 (84) T 2fmy_A 30 LGLNTEEIALMLGTTRQTVSVLLNDF 55 (84) T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 23169999999799899999999999 No 140 >>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:) Probab=75.36 E-value=2.9 Score=21.25 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=28.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565654 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +.-+|... +...++.+| ...+.|+.+|.|++++.+.|+=.. T Consensus 18 ~~~~Er~~-I~~aL~~~g-n~~~aA~~Lgisr~tL~rklkk~g 58 (61) T 1g2h_A 18 IGFYEAQV-LKLFYAEYP-STRKLAQRLGVSHTAIANKLKQYG 58 (61) T ss_dssp CSHHHHHH-HHHHHHHSC-SHHHHHHHTTSCTHHHHHHHHTTT T ss_pred HHHHHHHH-HHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99999999-999840387-389999995861899998999846 No 141 >>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} (I:1-94) Probab=75.35 E-value=3.7 Score=20.62 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=28.4 Q ss_pred CCHHHH-HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHH Q ss_conf 104899-999998521011104679999743------37877865656 Q gi|254780805|r 135 LNPLEE-ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILRI 175 (300) Q Consensus 135 l~p~e~-A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~LrL 175 (300) |.-+|+ |..|+.-.=..|+||.+++..+|. |+++|++.-+| T Consensus 3 l~ele~Fa~~fK~rRi~LG~TQ~dVG~ALg~l~G~~fSQTtIcRFEaL 50 (94) T 3d1n_I 3 XEEIREFAKNFKIRRLSLGLTQTQVGQAXTATEGPAYSQSAISRFEKL 50 (94) T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH T ss_conf 899999999999999984676968999997337763563546559988 No 142 >>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91) Probab=74.97 E-value=3 Score=21.21 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=28.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++. ++..+..+.+.-++|+.+||+.+|.++++|++.+. T Consensus 10 ~l~~~-~~~iL~~i~~~~~~t~~ela~~l~i~~~~vs~~i~ 49 (91) T 3cta_A 10 YRAIK-KIKEAAEASNRAYLTSSKLADMLGISQQSASRIII 49 (91) T ss_dssp HHHHH-HHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHH-HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999-99985640479983899999998878879999999 No 143 >>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102) Probab=74.91 E-value=5 Score=19.78 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+..+.+.-++++.+||+.+|.++++|++.+. T Consensus 4 q~~iL~~l~~~~~~~~~~la~~~~~~~stvs~~i~ 38 (73) T 3bdd_A 4 RYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLK 38 (73) T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999986998999999998715758999999 No 144 >>3ere_D Arginine repressor; X-RAY crystallography, arginine repressor protein; 2.50A {Mycobacterium tuberculosis H37RV} PDB: 3fhz_A* (D:1-87) Probab=74.79 E-value=3.6 Score=20.64 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=34.7 Q ss_pred CCCCHHHHHHHHHHHHHHCC-CCHHHHHHHH-----HHHHHHHHHHHHHHH Q ss_conf 22104899999998521011-1046799997-----433787786565654 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYG-YTQNDIGSIV-----GKSRSHVANILRILK 177 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~-----G~s~s~V~~~LrLl~ 177 (300) ..++..+.-..+..++...+ .|+++|++.+ +.|.+||++-|.-|. T Consensus 14 ~~m~k~~R~~~I~~~l~~~~~~t~~eL~~~L~~~gf~VSq~TIrRDL~~L~ 64 (87) T 3ere_D 14 VAANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELG 64 (87) T ss_dssp -CCCHHHHHHHHHHHHHTCCCCSHHHHHHHHHHTTCCCCHHHHHHHHHTTT T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC T ss_conf 786899999999999985897899999999997497611788887999809 No 145 >>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} (A:144-208) Probab=74.55 E-value=3.8 Score=20.54 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=23.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+ |+|..+||+.+|.|..+|.++++ T Consensus 9 ~l~~~-G~t~~eIA~~l~iS~~TV~~~~~ 36 (65) T 1yio_A 9 QLTIR-GLMNKQIAGELGIAEVTVKVHRH 36 (65) T ss_dssp HHHTT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHC-CCCHHHHHHHCCCCHHHHHHHHH T ss_conf 99981-66299999981886899999999 No 146 >>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} (A:147-220) Probab=74.21 E-value=3.9 Score=20.41 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 11104679999743378778656565435899998764210167777 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHAR 197 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar 197 (300) +.+|++++|..+|.++.+|++.| +++-.+|-|.....+ T Consensus 22 i~~t~~~lA~~lg~sr~tvsr~L---------~~l~~~g~I~~~~~~ 59 (74) T 3dv8_A 22 LKITHETIANHLGSHREVITRXL---------RYFQVEGLVKLSRGK 59 (74) T ss_dssp ECCCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEEEETTE T ss_pred CCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEECCCE T ss_conf 66449999999798999999999---------999988989962999 No 147 >>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138) Probab=74.17 E-value=2.6 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=23.0 Q ss_pred HHHHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210-111046799997433787786565 Q gi|254780805|r 146 QLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.. .+.|+.+||+.+|.|+++|++.+. T Consensus 13 ~~~~~~~~~t~~~lA~~lgis~~tvt~~l~ 42 (138) T 3hrs_A 13 ELGTRHNKITNKEIAQLMQVSPPAVTEMMK 42 (138) T ss_dssp HTTSSCSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 998349987599999997899289999999 No 148 >>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A (A:103-184) Probab=74.07 E-value=0.7 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-+......+.. .|+|..+||+.+|.|.++|.+++. T Consensus 32 ~~L~~~~r~v~~l~~~--~g~s~~eIA~~lgis~~~v~~~l~ 71 (82) T 2q1z_A 32 ARLPEAQRALIERAFF--GDLTHRELAAETGLPLGTIKSRIR 71 (82) T ss_dssp HTSCHHHHHHHHHHHH--SCCSSCCSTTTCCCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8746899889999999--198999999998939999999999 No 149 >>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125) Probab=74.02 E-value=4.8 Score=19.86 Aligned_cols=35 Identities=14% Similarity=-0.056 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +...+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 6 q~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~ 40 (81) T 2fxa_A 6 EHHILWIAYQLNGASISEIAKFGVXHVSTAFNFSK 40 (81) T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999976995899999998457553779999 No 150 >>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus} (A:111-195) Probab=74.02 E-value=1.8 Score=22.63 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=26.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 11104679999743378778656565435899998764210167 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) +.+|+++||..+|.|+.+|++.|+ .+-.+|-|... T Consensus 28 ~~~t~~~lA~~~g~sr~tvsr~L~---------~l~~~giI~~~ 62 (85) T 2zdb_A 28 VTVSHEEIADATASIRESVSKVLA---------DLRREGLIATA 62 (85) T ss_dssp EECCHHHHHHTTTSCHHHHHHHHH---------HHHHHTSEEEE T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEE T ss_conf 388899999887997999999999---------99988989970 No 151 >>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} (A:133-222) Probab=73.81 E-value=2.4 Score=21.81 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=25.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 111046799997433787786565654358999987642101 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) +.+|+++||..+|.|+.+|++.|. ++-.+|-|. T Consensus 30 ~~lt~~~lA~~lg~sr~tvsr~l~---------~l~~~g~I~ 62 (90) T 1ft9_A 30 VDFTVEEIANLIGSSRQTTSTALN---------SLIKEGYIS 62 (90) T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHH---------HHHHTTSSE T ss_pred CHHHHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE T ss_conf 428899999984998999999999---------999889899 No 152 >>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A (A:) Probab=73.26 E-value=6.2 Score=19.17 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.5 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+ T Consensus 22 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAiellDrs 70 (94) T 2jrh_A 22 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS 70 (94) T ss_dssp SSCCHHHHHHHHHHHHCSSEEEEEECS--SCEEECCSHHHHHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC T ss_conf 984399999999998598454677567--1788525677889999987169 No 153 >>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:1-60) Probab=73.07 E-value=3.7 Score=20.62 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=26.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 110467999974337877865656-543589999876 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR 187 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~ 187 (300) ..|..+||+..|.|.++||+.|.= -.++++..+.|. T Consensus 9 ~~tl~diA~~aGvS~sTVSr~ln~~~~vs~~tr~rV~ 45 (60) T 3h5t_A 9 YGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRIL 45 (60) T ss_dssp TTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 7629999999884999999985898999999999999 No 154 >>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95) Probab=73.02 E-value=4.5 Score=20.07 Aligned_cols=46 Identities=4% Similarity=0.090 Sum_probs=35.7 Q ss_pred HCCCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210--11104679999743378778656565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .+.-...++.+..+-+++.+ .+++..+||+.+|.++++|.++|.-| T Consensus 15 ~~~~~~s~~r~l~iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~tL 62 (95) T 2o0y_A 15 ADAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATX 62 (95) T ss_dssp ---CCHHHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 787751999999999999747999899999999792989999999999 No 155 >>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} (A:) Probab=72.62 E-value=3.2 Score=20.96 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=36.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) +.|+..|.|..++..+..++++|.--|+. +|+|+.+++.+|+ T Consensus 19 ~~ldT~~I~~~i~~eL~~~~I~Q~~Fa~~vL~rSQGtlSdLL~ 61 (141) T 1yse_A 19 NTEVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILR 61 (141) T ss_dssp CCSCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH T ss_conf 7320799999999999984877999999998208588999996 No 156 >>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} (B:) Probab=72.58 E-value=6.5 Score=19.01 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=42.7 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||....+...++ .+.|...+.+||++-++.|..+ T Consensus 38 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAiellDrs 86 (100) T 2npt_B 38 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS 86 (100) T ss_dssp SSCCHHHHHHHHHHHHTSCEEEEEEET--TEEEECCCHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC T ss_conf 874399999999998598354677467--3788625677789999987059 No 157 >>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109) Probab=72.56 E-value=5.5 Score=19.49 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++..+..+.+.-++|+.+||+.+|.++++|++.+. T Consensus 3 ~q~~iL~~l~~~~~~t~~~l~~~~~~~~~~vs~~i~ 38 (75) T 2fbi_A 3 QQWRVIRILRQQGEMESYQLANQACILRPSMTGVLA 38 (75) T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999999986998999999998867888999999 No 158 >>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88) Probab=72.56 E-value=6.5 Score=19.01 Aligned_cols=47 Identities=26% Similarity=0.226 Sum_probs=32.3 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 65431022104899999998521011-1046799997433787786565 Q gi|254780805|r 127 VENVQRKDLNPLEEALGYEQLISEYG-YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 127 ~EN~~R~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+.+...++++.+-.. +..+...-| .|+.+||+.+|.++++|++.+. T Consensus 16 ~~~l~~~gls~~q~~v-L~~l~~~~g~~t~~~La~~~~~~~~~vs~~i~ 63 (88) T 1ku9_A 16 SELAKIHGLNKSVGAV-YAILYLSDKPLTISDIXEELKISKGNVSXSLK 63 (88) T ss_dssp HHHHHHTTCCHHHHHH-HHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHH-HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999981979999999-99999769896999999784866514999999 No 159 >>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:) Probab=71.97 E-value=2.4 Score=21.81 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=25.8 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .++.+...+..+||+.+|.|+++|+++|+.|. T Consensus 25 ~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~ 56 (118) T 3f6o_A 25 GRLSRGPATVSELAKPFDMALPSFMKHIHFLE 56 (118) T ss_dssp HHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99980997777779886969999999998899 No 160 >>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} (A:) Probab=71.56 E-value=6.9 Score=18.86 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=42.4 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) ....+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+ T Consensus 26 RPvk~~dl~~Kv~~afGq~ldl~y~nn--EL~IPl~~Q~DLDkAielLDrS 74 (103) T 2cu1_A 26 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS 74 (103) T ss_dssp SSCCHHHHHHHHHHHHSSCEEEEECSS--SSCEECCSHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC T ss_conf 874399999999998588253566467--2788625677889999987059 No 161 >>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} (A:) Probab=71.50 E-value=6.9 Score=18.86 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=29.1 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-|..... ++-. |+|..++|..+|.|..+|.++++ T Consensus 10 ~~LT~rE~~vl~--~~~~-G~s~~eIA~~l~is~~TV~~~~~ 48 (74) T 1fse_A 10 PLLTKREREVFE--LLVQ-DKTTKEIASELFISEKTVRNHIS 48 (74) T ss_dssp CCCCHHHHHHHH--HHTT-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 987999999999--9992-79999999996898779999999 No 162 >>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:1-45) Probab=71.41 E-value=2.6 Score=21.57 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=24.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 0467999974337877865656-543589999876 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR 187 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~ 187 (300) |-.++|+..|.|+++|++.|.= -..+++.++.|. T Consensus 2 Ti~diA~~agvS~~TVSr~ln~~~~Vs~~tr~rV~ 36 (45) T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVW 36 (45) T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 68999999895999999996897999999999999 No 163 >>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} (A:) Probab=71.39 E-value=5.7 Score=19.37 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=42.8 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+ T Consensus 49 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAiellDrs 97 (111) T 2c60_A 49 RPVKYEDVEHKVTTVFGQPLDLHYXNN--ELSILLKNQDDLDKAIDILDRS 97 (111) T ss_dssp SSCCHHHHHHHHHHHHSSCCEEEEECS--SCEEECCSHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC T ss_conf 884399999999998598454677567--1788525677889999987069 No 164 >>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125) Probab=71.12 E-value=6.3 Score=19.09 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=31.0 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3102210489999999852101110467999974337877865656 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ....+|++.+-. .+..+...-+.|+.+||+.+|.++++|++.+.- T Consensus 33 ~~~~~lt~~q~~-iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~ 77 (125) T 3bj6_A 33 TLREGVTVGQRA-ILEGLSLTPGATAPQLGAALQXKRQYISRILQE 77 (125) T ss_dssp HHHTTCCHHHHH-HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 867698999999-999999869989999999988657589999999 No 165 >>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} (A:120-231) Probab=71.03 E-value=4.9 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=26.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 1104679999743378778656565435899998764210167777 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHAR 197 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar 197 (300) .+|++++|..+|.++.+|++.|+ ++-.+|.|+..+.+ T Consensus 56 ~lt~~~lA~~~g~sr~tvsr~l~---------~L~~~G~I~~~~~~ 92 (112) T 3e97_A 56 PLGTQDIXARTSSSRETVSRVLK---------RLEAHNILEVSPRS 92 (112) T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEECSSC T ss_pred CCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCCE T ss_conf 55799999996999999999999---------99978989972999 No 166 >>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} (B:) Probab=70.99 E-value=5.6 Score=19.41 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=28.9 Q ss_pred CCCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985-21-011104679999743378778656 Q gi|254780805|r 133 KDLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 133 ~dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) ..|+|-|...-..+. ++ .-.+|++++|+.+|.|+..|++.- T Consensus 4 ~~L~erEr~Ii~lrfGl~~~~~~tl~eia~~lgiS~erVrqie 46 (68) T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 46 (68) T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 0399999999999838889997889999999897899999999 No 167 >>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} (A:152-232) Probab=70.77 E-value=3 Score=21.14 Aligned_cols=36 Identities=8% Similarity=0.222 Sum_probs=26.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 111046799997433787786565654358999987642101677 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGH 195 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh 195 (300) +.+|+++||..+|.++.+|++.| +++-.+|-|...+ T Consensus 28 ~~lt~~~lA~~lG~sr~tvsr~L---------~~l~~~g~I~~~~ 63 (81) T 2gau_A 28 IYLSREELATLSNMTVSNAIRTL---------STFVSERMLALDG 63 (81) T ss_dssp CCCCHHHHHHHTTSCHHHHHHHH---------HHHHHTTSEEEET T ss_pred CCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEECC T ss_conf 28789999989799999999999---------9999889699709 No 168 >>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A (A:) Probab=70.37 E-value=6.5 Score=19.02 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|++-|.-.. +++-. |+|..+||+.+|.|..+|.++++ T Consensus 26 ~~LT~rE~~vl--~ll~~-G~s~~eIA~~L~iS~~TV~~~~~ 64 (95) T 3c57_A 26 SGLTDQERTLL--GLLSE-GLTNKQIADRMFLAEKTVKNYVS 64 (95) T ss_dssp -CCCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 40599999999--99991-79879984885668889999999 No 169 >>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:) Probab=70.36 E-value=3.9 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=21.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|..++|+.+|.|..+|.++++ T Consensus 13 G~s~~eIA~~l~iS~~TV~~~~~ 35 (61) T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRM 35 (61) T ss_dssp SCCSHHHHHHTCSCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 79999999896988999999999 No 170 >>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:) Probab=70.35 E-value=3.9 Score=20.41 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=36.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-743378778656565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRIL 176 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl 176 (300) +.|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+=- T Consensus 15 ~~ldT~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~~P 59 (101) T 1wiz_A 15 SVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKE 59 (101) T ss_dssp SCCCCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTC T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCC T ss_conf 023289999999999999498799999999753808899998589 No 171 >>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (F:504-613) Probab=70.25 E-value=1.6 Score=23.00 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=33.0 Q ss_pred CCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210--111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|+|-++.....++... -|+|..+||..+|.|+++|++++. T Consensus 46 ~~L~~~~r~ii~l~~~~~~~e~~t~~eIA~~lgis~~~V~~~~~ 89 (110) T 3iyd_F 46 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEA 89 (110) T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 48999999999998189999982499999997959999999999 No 172 >>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} (A:) Probab=70.21 E-value=5.4 Score=19.55 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=27.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|++-|.-... ++-+ |+|..+||+.+|.|..+|.++++ T Consensus 16 ~Lt~~E~~vl~--~~~~-G~s~~eIA~~L~is~~TV~~~~~ 53 (79) T 1x3u_A 16 TLSERERQVLS--AVVA-GLPNKSIAYDLDISPRTVEVHRA 53 (79) T ss_dssp HHCHHHHHHHH--HHTT-TCCHHHHHHHTTSCHHHHHHHHH T ss_pred CCCHHHHHHHH--HHHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 39999999999--9993-69999998898978999999999 No 173 >>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} (A:1-46) Probab=70.18 E-value=0.53 Score=26.04 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHH Q ss_conf 011104679999743378778 Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVA 170 (300) Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~ 170 (300) +.|+||++||+.+|-||+.|+ T Consensus 3 ~~GltQ~eIA~~LgTSRANis 23 (46) T 1nr3_A 3 ERGWSQKKIARELKTTRQNVS 23 (46) T ss_dssp CCSCSSCSTHHHHHHCCSSSC T ss_pred CCCCCHHHHHHHHCCCHHHHH T ss_conf 256779999999776588999 No 174 >>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A (A:24-107) Probab=69.90 E-value=6.9 Score=18.86 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.8 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +++.+ |.|+.+|++.+|.|-+||++-=+-|+ T Consensus 30 ~~L~~-g~syreI~~~tGaS~ATIsRvsr~L~ 60 (84) T 3frw_A 30 KXLTD-KRTYLDISEKTGASTATISRVNRSLN 60 (84) T ss_dssp HHHHT-TCCHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99886-99999999996987575899999987 No 175 >>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146) Probab=69.82 E-value=5.2 Score=19.63 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=24.3 Q ss_pred HHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521-011104679999743378778656565 Q gi|254780805|r 144 YEQLIS-EYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 144 ~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +..+.. ....+..+||+++|.|+++|++.++-| T Consensus 15 i~~l~~~~~~v~~~elA~~l~vs~~svt~~i~rL 48 (146) T 2qq9_A 15 IYELEEEGVTPLRARIAERLEQSGPTVSQTVARM 48 (146) T ss_dssp HHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999865997619999999789927999999999 No 176 >>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122) Probab=69.72 E-value=7 Score=18.83 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=34.3 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 1022104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) ...+|++.+-. .+..+....+.|+.+||+.+|.+++++++.+ ..++..|-+ T Consensus 31 ~~~~ls~~q~~-iL~~i~~~~~~t~~ela~~~~i~~~~vsr~v---------~~L~~~g~v 81 (122) T 1s3j_A 31 EKQGVTPAQLF-VLASLKKHGSLKVSEIAERXEVKPSAVTLXA---------DRLEQKNLI 81 (122) T ss_dssp HHTTCCHHHHH-HHHHHHHHSEEEHHHHHHHHTSCHHHHHHHH---------HHHHHTTSE T ss_pred HHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHHHHH T ss_conf 78598999999-9999998699799999999896998999999---------999862425 No 177 >>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} (A:1-82,A:382-406) Probab=69.26 E-value=6.6 Score=18.97 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..-+...++-+......|..+||+.+|.|+++|++.+. T Consensus 15 ~~N~~~IL~lL~~~g~~Sr~eLA~~lgLS~~TVs~iv~ 52 (107) T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH 52 (107) T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999985991899999887959999999999 No 178 >>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:) Probab=69.24 E-value=5.7 Score=19.41 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=27.8 Q ss_pred CCCCHHHHH--HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999--9999852101-11046799997433787786565 Q gi|254780805|r 133 KDLNPLEEA--LGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A--~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++..+. ..+..+.++. ..++.+||+.+|.|+++|++.++ T Consensus 32 ~~lt~~~~~~L~~I~~l~~~~~~v~~~dlA~~l~vs~~tv~~~l~ 76 (155) T 2h09_A 32 AHRRELIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLK 76 (155) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 316457999999999998227977399999885988578999999 No 179 >>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} (A:1-55) Probab=69.23 E-value=2.3 Score=21.89 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=24.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011104679999743378778656565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .|.+....|..+||+.+|.|+++|.++++=| T Consensus 13 ~L~~~~r~s~~ela~~lgis~~tv~~ri~~L 43 (55) T 2cg4_A 13 ALMGNARTAYAELAKQFGVSPETIHVRVEKM 43 (55) T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999998589999999999887758999999 No 180 >>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141) Probab=69.09 E-value=5.3 Score=19.60 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=27.4 Q ss_pred CCCHHHHHH--HHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 210489999--9998521-0111046799997433787786565 Q gi|254780805|r 134 DLNPLEEAL--GYEQLIS-EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~--~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|++-+.-. .+..+.+ ..+.++.+||+++|.|+++|++.+. T Consensus 3 ~Lt~~q~~~L~~I~~l~~~~~~v~~~eLA~~l~vs~~tvt~~l~ 46 (141) T 1fx7_A 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVS 46 (141) T ss_dssp TTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH T ss_conf 56778999999999998449975199999997899168999999 No 181 >>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} (C:) Probab=69.03 E-value=1.1 Score=23.86 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=14.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) ++|++|||+.+|.|+++|++.+ T Consensus 214 ~ls~~EIA~~LgiS~~~V~q~~ 235 (243) T 1l0o_C 214 DQTQSEVASRLGISQVQMSRLE 235 (243) T ss_dssp ---------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 9889999999895999999999 No 182 >>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131) Probab=68.81 E-value=7.6 Score=18.58 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=42.4 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHH-HHHCC Q ss_conf 10221048999999985210111046799997433787786565654358999987642101------677777-64010 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS------LGHART-LVSTS 203 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is------~ghar~-Ll~~~ 203 (300) ...+|++-+ +..+..+.+.-+.|+.+||+.+|.++++|++.+. .++..|-|. ...-|. ++.+. T Consensus 35 ~~~~lt~~q-~~iL~~i~~~~~~t~~~la~~l~~~~s~vs~~i~---------~L~~~glV~r~~~~d~~D~R~~~i~LT 104 (131) T 2qww_A 35 ASLGLTIQQ-LAXINVIYSTPGISVADLTKRLIITGSSAAANVD---------GLISLGLVVKLNKTIPNDSXDLTLKLS 104 (131) T ss_dssp HHHTCCHHH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEESCC--CTTCTTCEEEEC T ss_pred HHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH---------HHHHHHHHHHHHCCCCCCCCEEEECCC T ss_conf 874998899-9999999987998999999997864466626657---------999877865232023566652242567 Q ss_pred -HHHHHHHHHHHC Q ss_conf -046899997422 Q gi|254780805|r 204 -DPLSLAQVIVSK 215 (300) Q Consensus 204 -~~~~la~~Ii~~ 215 (300) ...++.+.+... T Consensus 105 ~~G~~~~~~~~~~ 117 (131) T 2qww_A 105 KKGEDLSKRSTAN 117 (131) T ss_dssp HHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHH T ss_conf 7899999999999 No 183 >>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:) Probab=68.75 E-value=6.4 Score=19.07 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=25.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101110467999974337877865656 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .+..+...-+.|+.+||+.+|.+++++++.++- T Consensus 21 il~~l~~~~~~t~~eLa~~~~i~~~~~s~~l~~ 53 (100) T 1ub9_A 21 IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100) T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHH T ss_conf 999972678961999999885268744199998 No 184 >>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A (A:1-76) Probab=68.61 E-value=1.1 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.3 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +++...+++..+||+.+|.|+++|+..|+.|. T Consensus 19 ~~L~~~~~~v~eLa~~~~is~stiS~HL~~L~ 50 (76) T 2qlz_A 19 SHLTCXECYFSLLSSKVSVSSTAVAKHLKIXE 50 (76) T ss_dssp HHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99981999699999998919889999999998 No 185 >>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101) Probab=68.53 E-value=7.7 Score=18.55 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=24.4 Q ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210-111046799997433787786565 Q gi|254780805|r 142 LGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+..+... -+.|+.+||+.++.++++|++.++ T Consensus 7 ~vL~~l~~~~~~~t~~~la~~~~~~~~tvs~~i~ 40 (67) T 2fbh_A 7 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 40 (67) T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999998759996599999998978988999999 No 186 >>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318) Probab=68.14 E-value=1.2 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|..++|+++|.|++||++.|. T Consensus 4 ~T~~dIA~~agVS~~TVSRaLn 25 (185) T 3dbi_A 4 TTXLEVAKRAGVSKATVSRVLS 25 (185) T ss_dssp ---------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHHC T ss_conf 8899999998988999999968 No 187 >>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122) Probab=68.11 E-value=7.9 Score=18.49 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=33.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 221048999999985210111046799997433787786565654358999987642101 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) .++++. +...+..+...-+.|+.+||+.+|.++++|++.+ ..++..|-|. T Consensus 30 ~~lt~~-~~~iL~~l~~~~~~t~~~la~~l~i~~~~vs~~i---------~~L~~~g~i~ 79 (122) T 1jgs_A 30 LDITAA-QFKVLCSIRCAACITPVELKKVLSVDLGALTRML---------DRLVCKGWVE 79 (122) T ss_dssp TTSCHH-HHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEE T ss_pred CCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEE T ss_conf 597999-9999999987799899999999897886899999---------9998689879 No 188 >>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114) Probab=67.97 E-value=7.4 Score=18.65 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 4 q~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~ 38 (87) T 1lj9_A 4 QYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIK 38 (87) T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999838997999999998978858999999 No 189 >>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122) Probab=67.85 E-value=7.5 Score=18.64 Aligned_cols=40 Identities=13% Similarity=-0.004 Sum_probs=28.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++.+-. .+..+ ...+.|+.+||+++|.++++|++.++ T Consensus 33 ~~lt~~~~~-iL~~i-~~~~~t~~ela~~~~~~~~~vs~~i~ 72 (122) T 3f3x_A 33 MNLSYLDFS-ILKAT-SEEPRSMVYLANRYFVTQSAITAAVD 72 (122) T ss_dssp HSCCHHHHH-HHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHH-HHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 599999999-99999-92991999999997978868999999 No 190 >>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123) Probab=67.82 E-value=7.6 Score=18.57 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=29.7 Q ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 1048999999985210-11104679999743378778656565435899998764210 Q gi|254780805|r 135 LNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 135 l~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) +++.+ ...+..+.+. ...|+.+||+.+|.++++|++.+ ..+...|-| T Consensus 4 lt~~~-~~vL~~l~~~~~~~t~~~La~~~~~~~~~vs~~i---------~~L~~~GlI 51 (94) T 2hr3_A 4 VQFSQ-LVVLGAIDRLGGDVTPSELAAAERXRSSNLAALL---------RELERGGLI 51 (94) T ss_dssp HHHHH-HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH---------HHHHHTTSE T ss_pred CCHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE T ss_conf 89999-9999999976999899999999797988999999---------999866976 No 191 >>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:1-161,A:294-339) Probab=67.61 E-value=1.3 Score=23.56 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=21.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH Q ss_conf 110467999974337877865656-54358999987 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMI 186 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l 186 (300) ..|..+||++.|.|++|||+.|.= -...++..+.| T Consensus 4 kvTikdIA~~aGVS~sTVSrvLng~~~Vs~eTr~rV 39 (207) T 3h5o_A 4 GVTXHDVAKAAGVSAITVSRVLNQPQQVSEQLREKV 39 (207) T ss_dssp ------------------------------------ T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 445999999989599999999589899999999999 No 192 >>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122) Probab=67.48 E-value=7.1 Score=18.78 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=33.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 221048999999985210111046799997433787786565654358999987642101 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) -++++-+- ..+..+...-+.|+.+||+.+|.++++|++.+. .++..|-|. T Consensus 33 ~~lt~~~~-~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~---------~L~~~G~I~ 82 (122) T 3ech_A 33 LDLTPPDV-HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIR---------ELEGRNLVR 82 (122) T ss_dssp CCCCHHHH-HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHH---------HHHHTTSEE T ss_pred CCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHHHCEE T ss_conf 89899999-999999987998999999997935726999999---------999961320 No 193 >>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130) Probab=67.35 E-value=8.2 Score=18.36 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=32.8 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 022104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) +.++++.+-. .+..+....+.|+.+||+.+|.++++|++.++ .++..|-| T Consensus 39 ~~~lt~~~~~-iL~~l~~~~~~t~~eLa~~~~i~~~~vs~~i~---------~L~~~glv 88 (130) T 2eth_A 39 ISDXKTTELY-AFLYVALFGPKKXKEIAEFLSTTKSNVTNVVD---------SLEKRGLV 88 (130) T ss_dssp HHHSBHHHHH-HHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH---------HHHHTTSE T ss_pred HCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCE T ss_conf 4699999999-99999985995999999998969989999999---------99878884 No 194 >>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=67.25 E-value=6.2 Score=19.13 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=38.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565654358 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLPS 180 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~~ 180 (300) +.++..+.|..++..+..++++|.--|+. +|+|+.+++..||.-+=|. T Consensus 15 ~~ldT~~I~~~i~~eLk~~~IsQ~~Fa~~vl~rsQGtls~LLr~~~~Pk 63 (101) T 2csf_A 15 NINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPS 63 (101) T ss_dssp CCCCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCC T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCC T ss_conf 2233999999999999984864999999998027106999985447999 No 195 >>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} (H:376-438) Probab=67.03 E-value=6 Score=19.23 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) .+|.++||+.+|.|+.+|++.- T Consensus 20 ~~Tl~eIa~~lgiSrerVRqi~ 41 (63) T 1l9z_H 20 EHTLEEVGAYFGVTRERIRQIE 41 (63) T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 5129999999896999999999 No 196 >>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5} (A:) Probab=66.95 E-value=5.2 Score=19.62 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=24.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9852101110467999974337877865656 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .....++| +|...|+.||..++.|+..||- T Consensus 7 ~dyv~~~G-~Q~kaA~~lGV~Q~AIsKAlra 36 (67) T 2pij_A 7 SKYLEEHG-TQSALAAALGVNQSAISQXVRA 36 (67) T ss_dssp HHHHHHTC-CHHHHHHHHTSCHHHHHHHHHT T ss_pred HHHHHHHC-CHHHHHHHCCCCHHHHHHHHHC T ss_conf 99999946-2888999819778899999964 No 197 >>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111) Probab=66.66 E-value=6.9 Score=18.87 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=28.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|++.+ +..+..+.+.-+.|+.+||+.+|.+++++++.+. T Consensus 4 glt~~~-~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~ 43 (78) T 1z91_A 4 NITYPQ-YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 43 (78) T ss_dssp CCCHHH-HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH T ss_pred CCCHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 989999-9999998858999999999997968766889999 No 198 >>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119) Probab=66.30 E-value=8.8 Score=18.17 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=34.6 Q ss_pred HHHHCCCCCHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 543102210489999999-8521011104679999743378778656565435899998764210 Q gi|254780805|r 128 ENVQRKDLNPLEEALGYE-QLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 128 EN~~R~dl~p~e~A~~~~-~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) +.+...++++.+-..-+. ......++|+.+||+.+|.++++|++.+. .+...|-| T Consensus 22 ~~~~~~~l~~~~~~vL~~l~~~~~~~~t~~ela~~~~~~~~~vs~~v~---------~L~~~gli 77 (119) T 3eco_A 22 QKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLR---------NLERKKLI 77 (119) T ss_dssp HHHGGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHH---------HHHHTTSE T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCE T ss_conf 999885979999999999995599997999999998968889999999---------99988896 No 199 >>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133) Probab=66.00 E-value=8 Score=18.45 Aligned_cols=44 Identities=11% Similarity=0.116 Sum_probs=31.5 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +...+|++.+-. .+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 6 ~~~~~l~~~~~~-iL~~i~~~~~~t~~~la~~~~~~~~~vsr~i~ 49 (103) T 3cdh_A 6 IRAQGLRVPEWR-VLACLVDNDAXXITRLAKLSLXEQSRXTRIVD 49 (103) T ss_dssp HHHTTCCHHHHH-HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH T ss_conf 988397999999-99999818895999999996888643655699 No 200 >>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} (A:1-72) Probab=65.97 E-value=8.2 Score=18.37 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=23.3 Q ss_pred HHHHHHHCC--CCHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 998521011--104679999743-378778656565 Q gi|254780805|r 144 YEQLISEYG--YTQNDIGSIVGK-SRSHVANILRIL 176 (300) Q Consensus 144 ~~~l~~~~~--~t~~~lA~~~G~-s~s~V~~~LrLl 176 (300) +.+...+.| .|..+|++.+|. |.++|.++|.-| T Consensus 15 I~~~~~~~g~pps~rei~~~~g~~S~stV~~~l~~L 50 (72) T 1jhf_A 15 IRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (72) T ss_dssp HHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 999999829897699999982999737899987513 No 201 >>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108) Probab=65.37 E-value=6.7 Score=18.95 Aligned_cols=36 Identities=14% Similarity=0.112 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++..+..+.+.-+.|+.+||+.++.+++++++.+. T Consensus 6 ~~~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~ 41 (76) T 2bv6_A 6 PQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLK 41 (76) T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999999807994999999997988737999999 No 202 >>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121) Probab=65.35 E-value=9.2 Score=18.05 Aligned_cols=44 Identities=11% Similarity=-0.011 Sum_probs=30.6 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 4310221048999999985210111046799997433787786565 Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 129 N~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .....++++.+-. .+.. +.+.+.|+.+||+.+|.++++|++.+. T Consensus 29 ~~~~~~lt~~q~~-vL~~-l~~~~~t~~~la~~~~~~~~~vs~~i~ 72 (121) T 2gxg_A 29 RLGELNLSYLDFL-VLRA-TSDGPKTMAYLANRYFVTQSAITASVD 72 (121) T ss_dssp HHHTTTCCHHHHH-HHHH-HTTSCBCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHCCCCHHHHH-HHHH-HHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8877697999999-9999-985997999999998979879999999 No 203 >>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} (A:) Probab=65.18 E-value=4.3 Score=20.15 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011104679999743378778656 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.++.|| ++..+|+.+|.+++.|++-= T Consensus 5 ~ai~~~G-~~~~lA~~lgvs~~aVs~W~ 31 (61) T 1rzs_A 5 DVIDHFG-TQRAVAKALGISDAAVSQWK 31 (61) T ss_dssp HHHHHHS-SHHHHHHHHTCCHHHHHHCC T ss_pred HHHHHHC-CHHHHHHHHCCCHHHHHHCC T ss_conf 9999968-89999999299999998726 No 204 >>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139) Probab=64.79 E-value=9.4 Score=17.98 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=42.5 Q ss_pred HHHCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHC Q ss_conf 4310221048999999985210-11104679999743378778656565435899998764210----1677777-6401 Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHART-LVST 202 (300) Q Consensus 129 N~~R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar~-Ll~~ 202 (300) .....+|++-+-. .+..+... -+.|+.+||+.+|.++++|++.+ +.++..|-| +....|. .+.+ T Consensus 45 ~~~~~gl~~~~~~-iL~~l~~~~~~~t~~~La~~~~i~~~~vs~~i---------~~L~~~gli~r~~~~~D~R~~~i~L 114 (139) T 3deu_A 45 RLKPLELTQTHWV-TLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTL---------DQLEDKGLISRQTCASDRRAKRIKL 114 (139) T ss_dssp HTTTTTCCHHHHH-HHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHH---------HHHHHTTSEEEC--------CEEEE T ss_pred HHHHCCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEEEEECCCCCEEEEEE T ss_conf 9887697999999-99999976989999999999896998999999---------9999698879862068987578898 Q ss_pred CH-HHHHHHHHHH Q ss_conf 00-4689999742 Q gi|254780805|r 203 SD-PLSLAQVIVS 214 (300) Q Consensus 203 ~~-~~~la~~Ii~ 214 (300) .+ ..++.+++.. T Consensus 115 T~~G~~~~~~~~~ 127 (139) T 3deu_A 115 TEKAEPLIAEMEE 127 (139) T ss_dssp CGGGHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 9889999999999 No 205 >>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77) Probab=64.55 E-value=8.3 Score=18.35 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..+||+.+|.|+.+|...|+.|. T Consensus 38 ser~La~~~~VSr~tvr~Al~~L~ 61 (77) T 3f8m_A 38 AEREIAEQFEVARETVRQALRELL 61 (77) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 699999997969999999999999 No 206 >>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} (A:1-62) Probab=64.30 E-value=7.5 Score=18.60 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=22.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.-+++|.. .+|..+|+.+|.+.|+|++.- T Consensus 16 s~iL~rLa~---~gq~~vAe~iGvd~StiSR~K 45 (62) T 1zs4_A 16 SALLNKIAM---LGTEKTAEAVGVDKSQISRWK 45 (62) T ss_dssp HHHHHHHHH---HCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHH---HCCHHHHHHHCCCHHHHHHHH T ss_conf 999999999---720468998399899998998 No 207 >>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} (A:107-238) Probab=64.11 E-value=4.9 Score=19.81 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=24.9 Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 11046799997433-78778656565435899998764210167 Q gi|254780805|r 152 GYTQNDIGSIVGKS-RSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 152 ~~t~~~lA~~~G~s-~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) .+|+++||..+|.| |.+|++.|+ ++-.+|.|... T Consensus 63 ~lt~~elA~~~G~s~retvsr~l~---------~l~~~G~I~~~ 97 (132) T 2bgc_A 63 NLTMQELGYSSGIAHSSAVSRIIS---------KLKQEKVIVYK 97 (132) T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHH---------HHHHTTSEEEE T ss_pred CCCHHHHHHHHCCCCHHHHHHHHH---------HHHHCCCEEEC T ss_conf 767999999958982779999999---------99988989963 No 208 >>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=64.00 E-value=8.8 Score=18.19 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=23.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +.+..+||+.+|.++++|+..|+.|. T Consensus 43 ~~~~~eLa~~~~i~~stvs~HL~~L~ 68 (96) T 1y0u_A 43 GRSEEEIXQTLSLSKKQLDYHLKVLE 68 (96) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 41788999998939889999999998 No 209 >>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91) Probab=63.94 E-value=9.8 Score=17.88 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=21.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .++..+||+.+|.|+++|...|..|. T Consensus 49 ~l~e~~La~~~gvSr~tvr~Al~~L~ 74 (91) T 3c7j_A 49 ALRQQELATLFGVSRXPVREALRQLE 74 (91) T ss_dssp BCCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 63899999998869549999999999 No 210 >>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135) Probab=63.86 E-value=7.7 Score=18.54 Aligned_cols=57 Identities=21% Similarity=0.108 Sum_probs=35.8 Q ss_pred HHHHHCCCCCHHHHHHHHH--HHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 6543102210489999999--852101--11046799997433787786565654358999987642101 Q gi|254780805|r 127 VENVQRKDLNPLEEALGYE--QLISEY--GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 127 ~EN~~R~dl~p~e~A~~~~--~l~~~~--~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) ..+-..-+|++-|.+.-.. ...++. -.|.++||+.+|+|+++|.+.|+ .++..|-|+ T Consensus 7 ~~~~~~l~Ls~~~~~vl~~l~~~~~~g~~~pS~~~iA~~~g~s~~tV~~~l~---------~L~~~Gli~ 67 (120) T 2v79_A 7 LTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLR---------MFIQKGFLF 67 (120) T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHH---------HHHHHTSCE T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE T ss_conf 9878885999999999999999987699998999999996989999999999---------999889979 No 211 >>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76) Probab=63.75 E-value=9.8 Score=17.86 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=20.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..++|+.+|.|+++|.+.|+.|. T Consensus 35 se~~La~~~~vSr~tvr~al~~L~ 58 (76) T 3edp_A 35 NETALQEIYSSSRTTIRRAVDLLV 58 (76) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899999997949999999999999 No 212 >>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96) Probab=63.56 E-value=7.1 Score=18.78 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.+||+.+|.|+++|...|++|. T Consensus 55 s~~~La~~~gvsr~tvr~Al~~L~ 78 (96) T 3eet_A 55 SQARIREEYGVSDTVALEARKVLX 78 (96) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 799999998959999999999999 No 213 >>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:69-133) Probab=62.74 E-value=7.8 Score=18.50 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=23.5 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+...+|.+++|+.+|.|+++.++..+ T Consensus 20 i~~~~~itl~~lA~~~~~S~~~l~r~Fk 47 (65) T 1u8b_A 20 LEQETPVTLEALADQVAXSPFHLHRLFK 47 (65) T ss_dssp TCSSSCCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHCCCCHHHHHHHHH T ss_conf 7236999999995471999899999999 No 214 >>1stz_A Heat-inducible transcription repressor HRCA homolog; circe element, structural genomics, BSGC structure funded by NIH; 2.20A {Thermotoga maritima} (A:1-105) Probab=62.03 E-value=11 Score=17.66 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=31.8 Q ss_pred CCHHHHH--HHHHHHHHHCC--CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 1048999--99998521011--10467999974--33787786565654358999987642101677 Q gi|254780805|r 135 LNPLEEA--LGYEQLISEYG--YTQNDIGSIVG--KSRSHVANILRILKLPSSVREMIRKEEISLGH 195 (300) Q Consensus 135 l~p~e~A--~~~~~l~~~~~--~t~~~lA~~~G--~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh 195 (300) |++-.+. ..+.....+.| .|..+||+.+| .|.++|.+.|. .+-..|.|.-.| T Consensus 15 lt~Rq~~IL~~I~~~~~~~g~~vtv~el~~~~~l~vS~~TvrrdL~---------~Le~~G~l~r~h 72 (105) T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK---------KLEYLGYIYQPH 72 (105) T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH---------HHHHTTSEECCS T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHH---------HHHHCCCCCCCC T ss_conf 0899999999999999742995678999987289988699999999---------998787715899 No 215 >>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} (A:96-123,A:177-281) Probab=61.97 E-value=8.4 Score=18.31 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=26.4 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||.||- ..++++.+.++++-.+++|++ T Consensus 37 ~i~nP~NPTG~~~s~~~l~~i~~~a~~~~v~ 67 (133) T 3g7q_A 37 CVSRPTNPTGNVITDEELXKLDRLANQHNIP 67 (133) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCC T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC T ss_conf 0123323323333322201343210333343 No 216 >>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127) Probab=61.91 E-value=8.8 Score=18.18 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=30.4 Q ss_pred HHCCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985-210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQL-ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l-~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+.++++.+-..-+.-. ..+.++|+.+||+.+|.++++|++.++ T Consensus 8 l~~~glt~~~~~vL~~l~~~~~~~~t~~~La~~~~~~~~~vs~~i~ 53 (101) T 3jw4_A 8 LAELGLNSQQGRXIGYIYENQESGIIQKDLAQFFGRRGASITSXLQ 53 (101) T ss_dssp HHHTTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHH T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8776979999999999980899997999999998978858999999 No 217 >>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} (A:1-74) Probab=61.53 E-value=11 Score=17.61 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=33.2 Q ss_pred HCCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1022104899999998521---0111046799997433787786565654 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLIS---EYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~---~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ...+|++.|...+-.-+-. -..+|..++|+..|.|.++|.+..+=+. T Consensus 11 ~~~~lt~~e~~ia~yil~~~~~~~~~si~eiA~~~~vS~stv~Rf~kklG 60 (74) T 3iwf_A 11 QYPYFTKNEKKIAQFILNYPHKVVNXTSQEIANQLETSSTSIIRLSKKVT 60 (74) T ss_dssp HGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHS T ss_pred HHHHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 88544899999999999199999776399999997999989999999958 No 218 >>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:) Probab=61.44 E-value=11 Score=17.60 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=28.2 Q ss_pred CCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 02210489999999852101--11046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEY--GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~--~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++..+ +..+..+.... .+|+.+||+.+|.++++|++.+. T Consensus 32 ~~gl~~~~-~~iL~~l~~~~~~~~t~~ela~~l~i~~~~vs~~v~ 75 (127) T 2frh_A 32 EFSISFEE-FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127) T ss_dssp TTCCCHHH-HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHH T ss_pred HCCCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 74989999-999999984689991899999997989868999999 No 219 >>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124) Probab=61.25 E-value=11 Score=17.58 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=30.3 Q ss_pred HHCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210-111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+.+|++.+-. .+..|... -++|+.+||+.+|.++++|++.+. T Consensus 32 ~~~~~lt~~q~~-iL~~l~~~~~~~t~~ela~~~~~~~~~vs~~i~ 76 (124) T 3fm5_A 32 LVPTGLRVRSYS-VLVLACEQAEGVNQRGVAATXGLDPSQIVGLVD 76 (124) T ss_dssp HGGGTCCHHHHH-HHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 988498999999-999999859898999999997887777889999 No 220 >>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119) Probab=60.69 E-value=11 Score=17.57 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=34.6 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 31022104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) ....++++.+ +..+..+.+.-+.|+.+||+.++.++++|++.+ ..++..|-| T Consensus 29 ~~~~~lt~~q-~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i---------~~L~~~gli 80 (119) T 3hsr_A 29 LKEYDLTYTG-YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLL---------KKLEKKDYV 80 (119) T ss_dssp HGGGTCCHHH-HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE T ss_conf 9885989999-999999987799899999999896886899999---------999817956 No 221 >>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487) Probab=60.53 E-value=7.8 Score=18.50 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=21.7 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++|+.+||+.+|.++++|++.+. T Consensus 17 ~~~~~t~~~l~~~l~~~~~~vs~~i~ 42 (87) T 1hsj_A 17 ESNEISSKEIAKCSEFKPYYLTKALQ 42 (87) T ss_dssp SCSEEEHHHHHHSSCCCHHHHHHHHH T ss_pred CCCCCCHHHHHHHCCCCCCCHHHHHH T ss_conf 15786499998641678112048898 No 222 >>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} (A:) Probab=60.35 E-value=11 Score=17.48 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=41.1 Q ss_pred HHHHHHHH--CCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH Q ss_conf 56665431--02210489999999852---1011104679999743378778656565435--8999987642 Q gi|254780805|r 124 IAIVENVQ--RKDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMIRKE 189 (300) Q Consensus 124 ~~l~EN~~--R~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l~~~ 189 (300) +.+.+.+. -..|+|.|.-.+=.-+- .-...|..++|+..|.|.++|.|..+-+-.. ++++..+... T Consensus 6 m~i~~~i~~~~~~Lt~~e~~ia~yil~n~~~~~~~si~eiA~~~~vS~sTI~Rf~kkLGy~gf~elk~~l~~~ 78 (111) T 2o3f_A 6 TGGLAIIQSXXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXXRVAGD 78 (111) T ss_dssp CCHHHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 1099999987262799999999999959247655579999999798999999999996679899999999999 No 223 >>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94) Probab=59.82 E-value=12 Score=17.42 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565654 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++..+||+.+|.|+++|...|+.|. T Consensus 52 l~e~~La~~~~vSr~tvR~al~~L~ 76 (94) T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILI 76 (94) T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 6999999997959999999999999 No 224 >>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} (A:) Probab=59.82 E-value=7.9 Score=18.47 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=42.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH Q ss_conf 104899999998521011104679999-74337877865656543589999876421016777776401004 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDP 205 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~ 205 (300) ++..+.|.-++..+..++++|.--|+. +|+|+.+++.+|+=-+=| -..+..|.-++-.-+--+.+++. T Consensus 7 ~dt~~i~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~~PK~p---w~~~~~gre~~~rM~~wL~~p~~ 75 (93) T 2o4a_A 7 EVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDP---KTASQSLLVNLRAMQNFLQLPEA 75 (93) T ss_dssp CCCTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCT---TSCCHHHHHHHHHHHHHHTSCHH T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHCCHHH T ss_conf 5409999999999999498799999999721827799998089993---14307777999999999829098 No 225 >>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} (A:1-62) Probab=59.77 E-value=7.1 Score=18.76 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=23.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) +..+++|.. .+|..+|+.+|.+.|+|++.- T Consensus 15 s~iL~~la~---~gq~~vAe~iGv~eStISR~k 44 (62) T 1xwr_A 15 SALLNKIAM---LGTEKTAEAVGVDKSQISRWK 44 (62) T ss_dssp HHHHHHHHH---HCHHHHHHHHTCCTTTHHHHH T ss_pred HHHHHHHHH---HHHHHHHHHHCCCHHHHHHHH T ss_conf 999999999---833548998298798851443 No 226 >>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114) Probab=59.55 E-value=12 Score=17.39 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+..+...-+.|+.+||+.+|.+++++++.++ T Consensus 6 ~~~iL~~i~~~~~~t~~~la~~~~i~~~~~s~~i~ 40 (71) T 2pex_A 6 QYLVMLVLWETDERSVSEIGERLYLDSATLTPLLK 40 (71) T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999847998999999997968878999999 No 227 >>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} (C:1-91) Probab=59.47 E-value=12 Score=17.38 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=25.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHH Q ss_conf 999998521011104679999743------37877865656 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILRI 175 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~LrL 175 (300) |..|+.-.=..|+||.+++..+|. |+++|++.-+| T Consensus 13 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~fSQTtIcRFE~L 53 (91) T 1e3o_C 13 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 53 (91) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHC T ss_conf 99999850354775989999999534675213364178873 No 228 >>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114) Probab=59.24 E-value=12 Score=17.35 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=36.7 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5431022104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 128 ENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 128 EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) +.....++++.+ +..+..+.+..++|+.+||+.+|.++++|++.+ ..++..|-| T Consensus 20 ~~~~~~~lt~~q-~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i---------~~L~~~gli 73 (114) T 3bpv_A 20 RELGHLNLTDAQ-VACLLRIHREPGIKQDELATFFHVDKGTIARTL---------RRLEESGFI 73 (114) T ss_dssp HHSGGGTCCHHH-HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE T ss_pred HHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE T ss_conf 997427979999-999999985899899999999896988999999---------999968986 No 229 >>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:1-157,A:286-333) Probab=59.16 E-value=2.3 Score=21.96 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=16.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|..+||++.|.|.+|||+.|. T Consensus 6 k~Ti~dIA~~aGVS~aTVSRvLN 28 (205) T 3jvd_A 6 KSSLKEVAELAGVGYATASRALS 28 (205) T ss_dssp ----------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHC T ss_conf 98899999998969999999977 No 230 >>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} (A:1-75) Probab=58.98 E-value=9.9 Score=17.85 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=23.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101110467999974337877865656 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .+.++ |.+..++|++||.|.++|++.+.. T Consensus 36 ~~~~~-G~s~r~iArrf~VS~stv~kwl~R 64 (75) T 2k27_A 36 DLAHQ-GVRPCDISRQLRVSHGCVSKILGR 64 (75) T ss_dssp HHHHH-TCCHHHHHHHHTCCSHHHHHHHCC T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99975-998999998877659899999999 No 231 >>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} (A:1-46) Probab=58.63 E-value=12 Score=17.29 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=24.8 Q ss_pred HHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999985-210111046799997433787786565 Q gi|254780805|r 138 LEEALGYEQL-ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 138 ~e~A~~~~~l-~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++..|=.- ..+-.+|.+++|+.+|.|+++.++..+ T Consensus 5 i~~~~~yI~~h~~~~~lsl~~lA~~~~~S~~yl~r~Fk 42 (46) T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFR 42 (46) T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999975689997999999998929999999999 No 232 >>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82) Probab=58.54 E-value=12 Score=17.28 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..+||+.+|.|+++|...|+.|. T Consensus 36 s~~~La~~~~vSr~tvr~Al~~L~ 59 (82) T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLV 59 (82) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 699999997969999999999999 No 233 >>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134) Probab=58.46 E-value=12 Score=17.27 Aligned_cols=40 Identities=10% Similarity=0.012 Sum_probs=28.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++.+-. .+..+.+..+.|+.+||+.+|.++++|++.++ T Consensus 46 ~~t~~~~~-iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~ 85 (134) T 2fa5_A 46 GXAIPEWR-VITILALYPGSSASEVSDRTAXDKVAVSRAVA 85 (134) T ss_dssp CCCHHHHH-HHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999-99999858997999999998848889999999 No 234 >>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78) Probab=58.35 E-value=12 Score=17.26 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..++|+.+|.|+++|.+.|..|. T Consensus 30 se~~La~~~~vSr~tvr~al~~L~ 53 (78) T 2di3_A 30 SERALSETLGVSRSSLREALRVLE 53 (78) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 099999998959999999999988 No 235 >>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} (F:259-314) Probab=58.16 E-value=10 Score=17.75 Aligned_cols=37 Identities=30% Similarity=0.407 Sum_probs=26.0 Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHH--HHHHHHHHHHHHHH Q ss_conf 9998521011--1046799997433--78778656565435 Q gi|254780805|r 143 GYEQLISEYG--YTQNDIGSIVGKS--RSHVANILRILKLP 179 (300) Q Consensus 143 ~~~~l~~~~~--~t~~~lA~~~G~s--~s~V~~~LrLl~L~ 179 (300) +.++|..++| -|.++||+.+|.| ..-|...+++..-| T Consensus 16 ~~~~l~q~~grept~eEiA~~l~~p~~~ekV~~~l~~~~~P 56 (56) T 2a6h_F 16 TARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEP 56 (56) T ss_dssp HHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCC T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCC T ss_conf 99999998489984789998843541299999999972887 No 236 >>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} (A:1-56) Probab=57.98 E-value=12 Score=17.22 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=31.8 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565654 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) -++=-++.+++..++.-|.|..++|+.+|.+.+++.+-++... T Consensus 6 ys~EFK~~aV~l~~~~~g~sv~~vA~~~gi~~~tl~~Wvk~~~ 48 (56) T 2jn6_A 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (56) T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 9999999999999983898399999996998213039999972 No 237 >>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100) Probab=57.61 E-value=8.3 Score=18.34 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|+.+||+++|.+++++++.+. T Consensus 2 it~~~la~~l~~~~~t~s~~i~ 23 (51) T 3bro_A 2 VLQRDLESEFSIKSSTATVLLQ 23 (51) T ss_dssp CBHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHCCCCCHHHHHHH T ss_conf 8999999887778236999999 No 238 >>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Pyrococcus horikoshii OT3} (A:130-257) Probab=57.58 E-value=12 Score=17.24 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=47.6 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 4533357567777764210013543334-641123455666543102210-48999999985210111046799997433 Q gi|254780805|r 88 LYKIIAGERRFRAAKMASLSEVPVIIRN-VDNKSSLEIAIVENVQRKDLN-PLEEALGYEQLISEYGYTQNDIGSIVGKS 165 (300) Q Consensus 88 ~y~ii~G~rR~rAa~~~g~~~ip~iv~~-~~d~~~~~~~l~EN~~R~dl~-p~e~A~~~~~l~~~~~~t~~~lA~~~G~s 165 (300) .|-.|++=-....-.++.+..||-.|.+ .+-.+...-+-.| ++|. |+++-..|-...-+.+++.++++..+|.+ T Consensus 20 d~~pi~~L~Kt~V~~La~~l~vp~~ii~k~PSa~L~~~q~DE----~~lg~~Y~~lD~~l~~~~~~~~~~~~i~~~~~~~ 95 (128) T 2e18_A 20 DYAPIINLYKTEVWEIAKRIGVPERIVKKKPSAGLWEGQTDE----DELGISYNLLDEILWRMIDLKIGKEEIAKDLGIP 95 (128) T ss_dssp SBCTTTTSCHHHHHHHHHHHTCCHHHHHSCCCCCSSTTCCHH----HHHTSCHHHHHHHHHHHHTSCCCHHHHHHTTTCC T ss_pred CHHHHCCHHHHHHHHHHHHCCCCHHHEECCCCCCCCCCCCCH----HCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC T ss_conf 213321447899999999609743210246785302368853----1048648889999999998499999999883979 Q ss_pred HHHHHHHHHHHH Q ss_conf 787786565654 Q gi|254780805|r 166 RSHVANILRILK 177 (300) Q Consensus 166 ~s~V~~~LrLl~ 177 (300) ...|.+..++.. T Consensus 96 ~~~v~~v~~~~~ 107 (128) T 2e18_A 96 LSLVERVEELIK 107 (128) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 239 >>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127) Probab=57.21 E-value=13 Score=17.14 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=31.5 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ....+|++.+-.. +..+...-+.|+.+||+.+|.++++|++.+. T Consensus 35 ~~~~~lt~~~~~i-L~~i~~~~~~t~~~la~~~~i~~~~vs~~i~ 78 (127) T 2rdp_A 35 LTNYPITPPQFVA-LQWLLEEGDLTVGELSNKXYLACSTTTDLVD 78 (127) T ss_dssp HTTSSSCHHHHHH-HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 8777979999999-9999977994999999987845244889999 No 240 >>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:1-155,A:286-330) Probab=56.60 E-value=2.7 Score=21.51 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=20.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 04679999743378778656565-4358999987 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300) |..++|++.|.|++|||+.|.=. ...++..+.| T Consensus 4 Ti~dIA~~aGVS~sTVSRaLn~~~~Vs~eTr~rV 37 (200) T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNTGYVSEDAREKI 37 (200) T ss_dssp ---------------------------------- T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 8999999989399999999779799999999999 No 241 >>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118) Probab=56.36 E-value=9.9 Score=17.84 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=30.7 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...+|++.+- ..+..+.+.-+.|+.+||+.+|.++++|++.++ T Consensus 27 ~~~~lt~~~~-~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~ 69 (118) T 3bja_A 27 EQYDISYVQF-GVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQ 69 (118) T ss_dssp GGGTCCHHHH-HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHH T ss_pred HHCCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 7869799999-999999986998999999986857461879999 No 242 >>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:1-162,A:293-349) Probab=55.54 E-value=2.8 Score=21.33 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=22.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 104679999743378778656565-435899998764 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMIRK 188 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l~~ 188 (300) .|..+||++.|.|.+||++.|.=- ..+++..+.|.+ T Consensus 4 vTikDIA~~aGVS~aTVSraLN~~~~Vs~~TrerV~~ 40 (219) T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEA 40 (219) T ss_dssp ------------------------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHH T ss_conf 7899999998859999999967959999999999999 No 243 >>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} (A:1-72) Probab=55.47 E-value=14 Score=16.96 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=22.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.++| .|-++||+..|.|+++|.++.+ T Consensus 40 ~~lf~~~G~~~~si~~Ia~~agvs~~~iY~~Fk 72 (72) T 3bru_A 40 LEHLTEKGYSSVGVDEILKAARVPKGSFYHYFR 72 (72) T ss_dssp HHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC T ss_conf 999998491506799999986889632332578 No 244 >>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} (A:) Probab=55.32 E-value=3.7 Score=20.59 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=24.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654358 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPS 180 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~ 180 (300) =++..++|+.+|.|+++|.+..+=-++|. T Consensus 10 ~l~~~eva~~lgis~~ti~~~~~~G~~P~ 38 (66) T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66) T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCCC T ss_pred EECHHHHHHHHCCCHHHHHHHHHCCCCCC T ss_conf 16499999997978999866731896148 No 245 >>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131) Probab=55.02 E-value=14 Score=16.91 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=31.0 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ....+|++.+ +..+..+.+.-+.|+.+||+.++.++++|++.+. T Consensus 39 ~~~~glt~~q-~~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~ 82 (131) T 3k0l_A 39 LSALEISLPQ-FTALSVLAAKPNLSNAKLAERSFIKPQSANKILQ 82 (131) T ss_dssp HHTTTCCHHH-HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH T ss_conf 8675989999-9999999967997999999985889464899999 No 246 >>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} (A:) Probab=54.81 E-value=3 Score=21.21 Aligned_cols=11 Identities=9% Similarity=0.302 Sum_probs=3.6 Q ss_pred HHHHHHHHHCC Q ss_conf 99999886310 Q gi|254780805|r 64 EDLCQSIKSHG 74 (300) Q Consensus 64 ~eLa~SI~~~G 74 (300) ..+.......| T Consensus 86 ~~~~~~~~~~~ 96 (348) T 3bil_A 86 TEIQSTASKAG 96 (348) T ss_dssp HHHHHHHHHTT T ss_pred CCCCCHHHHHH T ss_conf 22110123321 No 247 >>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2jk3_A 2fx0_A (A:1-70) Probab=54.29 E-value=12 Score=17.39 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=23.2 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|..+||+..|.|++++.++.. T Consensus 16 a~~l~~~~G~~~~ti~~Ia~~agis~~~~Y~~F~ 49 (70) T 2jj7_A 16 AKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 49 (70) T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCC T ss_conf 9999998591407799999881988400104799 No 248 >>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138) Probab=53.99 E-value=14 Score=16.80 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=28.6 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|++.+ +..+..+....+.|+.+||+.+|.++++|++.+. T Consensus 49 ~glt~~q-~~iL~~l~~~~~~t~~ela~~~~~~~~~~s~~v~ 89 (138) T 3e6m_A 49 EKLPTPK-LRLLSSLSAYGELTVGQLATLGVXEQSTTSRTVD 89 (138) T ss_dssp HTCCHHH-HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 5979999-9999999856996999999997747988829999 No 249 >>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133) Probab=53.87 E-value=8.5 Score=18.29 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=39.9 Q ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHCCH-HH Q ss_conf 210489999999852101-1104679999743378778656565435899998764210----1677777-640100-46 Q gi|254780805|r 134 DLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHART-LVSTSD-PL 206 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar~-Ll~~~~-~~ 206 (300) +|++.+-. .+..+.+.. ++|+.+||+.+|.++++|++.+.- +...|-| +....|. ++.+.+ .. T Consensus 44 ~lt~~~~~-il~~l~~~~~~~t~~~la~~l~i~~~~vs~~i~~---------Le~~GlI~r~~~~~DrR~~~i~lT~~G~ 113 (133) T 3boq_A 44 GLSLAKFD-AXAQLARNPDGLSXGKLSGALKVTNGNVSGLVNR---------LIKDGXVVKAXSADDRRSFSAKLTDAGL 113 (133) T ss_dssp SCCHHHHH-HHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHH---------HHHHTSEEEC--------CEEEECHHHH T ss_pred CCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH---------HHHCCCEEEECCCCCCCEEEEEECHHHH T ss_conf 93999999-9999985899988999998877789899999999---------9868886761066767514777898999 Q ss_pred HHHHHHHH Q ss_conf 89999742 Q gi|254780805|r 207 SLAQVIVS 214 (300) Q Consensus 207 ~la~~Ii~ 214 (300) ++.+.+.. T Consensus 114 ~~~~~~~~ 121 (133) T 3boq_A 114 TTFKQASE 121 (133) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999999 No 250 >>3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} (A:104-159,A:203-307) Probab=53.77 E-value=14 Score=16.88 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=26.8 Q ss_pred HCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 8235789998-768988999999988631001 Q gi|254780805|r 46 SIVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 46 ~i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) -+.+||.||- ..++.+.+.+|++=.+++|++ T Consensus 64 iil~nP~NPTG~v~s~e~l~~La~~~~~~~i~ 95 (161) T 3if2_A 64 ICCSRPTNPTGNVLTDEEXAHLAEIAKRYDIP 95 (161) T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 99899969968027899999998775404216 No 251 >>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A (A:205-295) Probab=53.72 E-value=15 Score=16.78 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=37.3 Q ss_pred HHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 23455666-54310221048999999985210111046799997433787786565 Q gi|254780805|r 120 SSLEIAIV-ENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 120 ~~~~~~l~-EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +...+-++ ++..-+.|++-..-.+.-|+-.. ..|-.+||+.+..|+|.|..+++ T Consensus 24 qi~~I~~i~~~~~~~~l~~~l~~~a~lRl~nP-e~SL~EL~~l~~iSKSgvnhrlr 78 (91) T 3hyi_A 24 QIRAIELIKENMGLENLPEDLRRVALVRLRNK-ELSLRELGKKLNLTKSQIYSKLK 78 (91) T ss_dssp HHHHHHHHHHHTCGGGSCHHHHHHHHHHHHCT-TSCHHHHHHTTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC-CCCHHHHHHCCCCCHHHHHHHHH T ss_conf 99999999983695439999999999998687-77899994464878999989999 No 252 >>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} (A:) Probab=53.19 E-value=15 Score=16.72 Aligned_cols=45 Identities=11% Similarity=0.250 Sum_probs=33.1 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565654 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .|...++=..+.+++.+ +. |.+..++|+.+|.+.+++.+-++-.. T Consensus 19 ~rr~yt~efK~~av~~~-~~-G~sv~eva~~~gIs~stl~~W~k~~~ 63 (87) T 2elh_A 19 PLRSLTPRDKIHAIQRI-HD-GESKASVARDIGVPESTLRGWCKNED 63 (87) T ss_dssp CCSSCCHHHHHHHHHHH-HH-TCCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHH-HC-CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 88708999999999998-72-69999999997969999999999999 No 253 >>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:1-163,A:294-332) Probab=52.97 E-value=3.3 Score=20.91 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=25.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 110467999974337877865656-543589999876 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIR 187 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~ 187 (300) ..|-.+||++.|.|.+|||+.|.= -..+++..+.|. T Consensus 5 ~~Tl~dIA~~agVS~sTVSRvLn~~~~Vs~~TrerV~ 41 (202) T 2o20_A 5 TTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVL 41 (202) T ss_dssp ------------------------------------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 8769999999796999999997896999999999999 No 254 >>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* (A:) Probab=52.85 E-value=11 Score=17.65 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=11.0 Q ss_pred HHCCCCCCCCCCCCCHHHHHH Q ss_conf 982357899987689889999 Q gi|254780805|r 45 HSIVPNPHNPRNYFESEGLED 65 (300) Q Consensus 45 ~~i~~~p~~pR~~~~~~~l~e 65 (300) +.|.-+-+.|-....+..|.+ T Consensus 31 ~~I~~G~l~pG~~Lpe~~La~ 51 (226) T 3dbw_A 31 EXILNHELKLGEKLNVRELSE 51 (226) T ss_dssp HHHHTTSSCTTCBCCHHHHHH T ss_pred HHHHCCCCCCCCCCCHHHHHH T ss_conf 999849999809779999999 No 255 >>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} (A:37-101) Probab=52.84 E-value=15 Score=16.69 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=25.2 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101110467999974337877865656543 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) +++.+...|+.+|++.+|.|-++|++-=+-|+- T Consensus 16 ~~L~~g~~syreI~~~tGaS~aTIsRvsr~L~~ 48 (65) T 1jhg_A 16 EELLRGEMSQRELKNELGAGIATITRGSNSLKA 48 (65) T ss_dssp HHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999839967999999969865667898999885 No 256 >>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355) Probab=52.35 E-value=3.4 Score=20.80 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=5.6 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 4679999743378778 Q gi|254780805|r 155 QNDIGSIVGKSRSHVA 170 (300) Q Consensus 155 ~~~lA~~~G~s~s~V~ 170 (300) ..+||+.+|.|.+||+ T Consensus 15 l~dIA~~aGVS~~TVS 30 (221) T 3e3m_A 15 MRDVAKAAGVSRMTVS 30 (221) T ss_dssp ---------------- T ss_pred HHHHHHHHCCCHHHHH T ss_conf 9999999885999999 No 257 >>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82) Probab=51.05 E-value=10 Score=17.68 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..++|+.+|.|+.+|...+..|. T Consensus 31 s~~~la~~~~vSr~tvr~Al~~L~ 54 (82) T 3bwg_A 31 VLETLXAQFEVSKSTITKSLELLE 54 (82) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 699999998939999999999999 No 258 >>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A (A:1-101) Probab=50.16 E-value=11 Score=17.54 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=24.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 0467999974337877865656543589999876421016777 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA 196 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha 196 (300) |..++|+.+|.|+.+|.+.|+.| ...|-|...+. T Consensus 30 se~~La~~~~VSr~tvr~Al~~L---------~~~Gli~~~~g 63 (101) T 2ek5_A 30 STNELAAFHRINPATARNGLTLL---------VEAGILYKKRG 63 (101) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH---------HTTTSEEEETT T ss_pred CHHHHHHHHCCCHHHHHHHHHHH---------HHCCCEEEECC T ss_conf 79999999789958999999999---------97892799889 No 259 >>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106) Probab=49.71 E-value=13 Score=17.19 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=24.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 046799997433787786565654358999987642101677 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGH 195 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gh 195 (300) +..++|+.+|.|+.+|...+..| ..+|-|..-+ T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L---------~~~G~i~~~~ 69 (106) T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL---------EAQKVIRTIP 69 (106) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH---------HHTTSEEEET T ss_pred CHHHHHHHHCCCHHHHHHHHHHH---------HHCCEEEEEC T ss_conf 49999999698989999999999---------9789079972 No 260 >>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77) Probab=48.71 E-value=13 Score=17.14 Aligned_cols=23 Identities=17% Similarity=0.569 Sum_probs=19.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656565 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +..++|+.+|.|+.+|...+..| T Consensus 33 s~~~La~~~~vSr~tvr~al~~L 55 (77) T 1hw1_A 33 AERELSELIGVTRTTLREVLQRL 55 (77) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 69999999792999999999999 No 261 >>1aoy_A Arginine repressor; DNA-binding protein, expression regulation, DNA organization, winged helix; NMR {Escherichia coli} (A:) Probab=48.18 E-value=18 Score=16.22 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=25.4 Q ss_pred HHHHHHHHHHCC-CCHHHHHHHH---H---HHHHHHHHHHHHHHH Q ss_conf 999998521011-1046799997---4---337877865656543 Q gi|254780805|r 141 ALGYEQLISEYG-YTQNDIGSIV---G---KSRSHVANILRILKL 178 (300) Q Consensus 141 A~~~~~l~~~~~-~t~~~lA~~~---G---~s~s~V~~~LrLl~L 178 (300) -..+++|+..+. .||++|...| | .+++|||+-|+-+.+ T Consensus 11 ~~~I~~lI~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eL~~ 55 (78) T 1aoy_A 11 VKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGA 55 (78) T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHHTC T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 999999998089789999999999839851109889999999398 No 262 >>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} (A:1-85) Probab=48.09 E-value=18 Score=16.23 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.2 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---1046799997433787786565 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..+++.+.| .|..+||+..|.|++++.++.. T Consensus 31 aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 65 (85) T 2zb9_A 31 AVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWP 65 (85) T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHC T ss_conf 99999998592406899999985636484127209 No 263 >>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=47.03 E-value=18 Score=16.11 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=28.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +-++-+...|+..+.. .++|....|..+|..++|+.+++. T Consensus 13 ~yt~e~l~~Ai~aV~~-g~mS~~~As~~y~IP~sTL~~ri~ 52 (70) T 2cob_A 13 QYNSEILEEAISVVMS-GKMSVSKAQSIYGIPHSTLEYKVK 52 (70) T ss_dssp CCCHHHHHHHHHHHHT-TSSCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHH-CCEEEHHCCCCCCCCCCHHHHHHH T ss_conf 3688899999999983-541222037530576501112277 No 264 >>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} (A:1-88) Probab=46.86 E-value=18 Score=16.24 Aligned_cols=36 Identities=6% Similarity=0.122 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565654 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .-..|..+.+ +| +-...|+.+|.|+++|++.++-++ T Consensus 8 ~l~~f~~v~~-~g-s~s~AA~~L~isq~avs~~i~~LE 43 (88) T 3fzv_A 8 QLKYFVTTVE-CG-SVAEASRKLYIAQPSISTAVKGLE 43 (88) T ss_dssp HHHHHHHHHH-SS-SHHHHHHHHTCCC-CHHHHHHHHH T ss_pred HHHHHHHHHH-CC-CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999998-09-999999998878889999999999 No 265 >>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, alternative splicing, mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 2vgz_A* (A:102-293) Probab=46.85 E-value=19 Score=16.09 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=26.1 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||+||- ..++.+.++++++-.+++|+. T Consensus 95 i~~~p~NPtG~~~s~~~l~~i~~~~~~~~~~ 125 (192) T 2r2n_A 95 TVPNGNNPTGNSLTSERKKEIYELARKYDFL 125 (192) T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHCCCCC T ss_conf 9799999756566627789999987523664 No 266 >>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} (A:) Probab=46.16 E-value=19 Score=16.02 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=20.7 Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111--04679999743378778656 Q gi|254780805|r 144 YEQLISEYGY--TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~~--t~~~lA~~~G~s~s~V~~~L 173 (300) -.+++.+.|+ |-.+||++.|.|++++.++. T Consensus 21 A~~lf~~~G~~~T~~~IA~~aGvs~~tiY~~F 52 (224) T 1t33_A 21 ALAQFGEYGLHATTRDIAALAGQNIAAITYYF 52 (224) T ss_dssp HHHHHHHHGGGSCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999987907569999998389924215788 No 267 >>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90) Probab=45.91 E-value=19 Score=16.00 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=27.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101110467999974337877865656543 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) .|..+ .+...|.++||.++|.+...+.+.||.+.. T Consensus 30 if~~l-~~~~~t~~eLa~~~g~~~~~l~rllr~l~~ 64 (90) T 3i53_A 30 VADHI-AAGHRTAAEIASAAGAHADSLDRLLRHLVA 64 (90) T ss_dssp HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHH T ss_pred HHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 78897-279999999998869298999999999998 No 268 >>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} (A:1-72) Probab=45.79 E-value=19 Score=15.99 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=22.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|..+||+..|.|++++.++.. T Consensus 18 ~~~~~~~G~~~~t~~~ia~~~gvs~~~~Y~~F~ 50 (72) T 3dew_A 18 TELFAQKGFYGVSIRELAQAAGASISXISYHFG 50 (72) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998592417799999996939999966658 No 269 >>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} (A:) Probab=45.43 E-value=19 Score=15.97 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=22.4 Q ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210--11104679999743378778656 Q gi|254780805|r 144 YEQLISE--YGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+ ++.|-.+||+..|.|+++|.++. T Consensus 22 a~~l~~~~G~~~t~~~Ia~~agvs~~tiY~~F 53 (196) T 2qwt_A 22 AYDTFAAEGLGVPMDEIARRAGVGAGTVYRHF 53 (196) T ss_dssp HHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHC T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999987967879999999596999999880 No 270 >>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} (A:1-50) Probab=44.93 E-value=20 Score=15.95 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=22.9 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---104679999743378778656 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +-.+++.+.| .|-++||+..|.|++++.++. T Consensus 16 aA~~l~~~~G~~~~t~~~Ia~~agisk~~~y~~F 49 (50) T 2g7s_A 16 CARTLIIRGGYNSFSYADISQVVGIRNASIHHHF 49 (50) T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 9999999739252889999998690999995761 No 271 >>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:) Probab=44.82 E-value=8 Score=18.43 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..++|+.+|.|+++|.+.|+.|. T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (102) T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLK 60 (102) T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTT T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899999997979999999999999 No 272 >>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:1-75) Probab=44.59 E-value=16 Score=16.59 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=24.0 Q ss_pred HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101---11046799997433787786565 Q gi|254780805|r 143 GYEQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..+++.+. +.|-.+||+..|.|++++.++.. T Consensus 15 aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~ 49 (75) T 2fd5_A 15 AATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ 49 (75) T ss_dssp HHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC T ss_conf 99999997194516899999873899426979819 No 273 >>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} (A:1-89) Probab=44.05 E-value=20 Score=15.82 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=24.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+...|.++||+++|.+...+.+.||.+. T Consensus 38 ~~g~~t~~eLa~~~g~~~~~l~rllr~l~ 66 (89) T 2ip2_A 38 ESGIDSDETLAAAVGSDAERIHRLMRLLV 66 (89) T ss_dssp HTTCCSHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 56999999999885949899999999998 No 274 >>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum atcc 13032} PDB: 1v7b_A 2zoy_A 2yvh_A* 2dh0_A* 2zoz_A* (A:) Probab=43.97 E-value=21 Score=15.81 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=22.9 Q ss_pred HHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111---046799997433787786565 Q gi|254780805|r 143 GYEQLISEYGY---TQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~~---t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..+++.+.|+ |-.+||++.|.|++++.++.. T Consensus 12 aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F~ 46 (185) T 2yve_A 12 TAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (185) T ss_dssp HHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCS T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHCCCCCCC T ss_conf 99999998592517899999986837402258799 No 275 >>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583) Probab=43.94 E-value=5.6 Score=19.45 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999852101-11046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +....+..++.++ .+|..++++.+|.|+++|++.|+ T Consensus 107 ~~~~~i~~~l~~~~~it~~ei~~~~gis~~ti~r~L~ 143 (174) T 3lmm_A 107 ELTNAAXLWLSEVGDLATSDLXAXCGVSRGTAKACVD 143 (174) T ss_dssp ------------------------------------- T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7999999999977993999999997949999999999 No 276 >>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} (A:1-85) Probab=43.75 E-value=21 Score=15.79 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=22.2 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|.++||++.|.+++++.++. T Consensus 53 ~~lf~~~G~~~~si~~IA~~agvs~~~~Y~yF 84 (85) T 3bni_A 53 ADLLDEVGYDALSTRAVALRADVPIGSVYRFF 84 (85) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC T ss_conf 99999849330779999998288965201208 No 277 >>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3} (A:) Probab=43.75 E-value=21 Score=15.79 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=12.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||++.|.|++++.++. T Consensus 23 ~t~~~IA~~aGvs~~tlY~~F 43 (209) T 3bqy_A 23 LTXRRLAQAXDVQAGALYRYF 43 (209) T ss_dssp CCHHHHHHHHTSCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 539999998790997999987 No 278 >>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} (A:1-75) Probab=43.60 E-value=15 Score=16.62 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=19.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 110467999974337877865656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) =+|..++|+++|.+.+.|.++++= T Consensus 31 ~LtlpevAe~Lgv~vtrV~~Lird 54 (75) T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLRE 54 (75) T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHHC T ss_conf 348999999969888999999987 No 279 >>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:1-88) Probab=43.59 E-value=21 Score=15.77 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998521011104679999743378778656565 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ++.-..|..+.+. | +-...|+.+|.++++|++.++-+ T Consensus 3 l~~l~~f~~v~~~-g-s~t~AA~~L~it~~avs~~i~~L 39 (88) T 1ixc_A 3 FRQLKYFIAVAEA-G-NXAAAAKRLHVSQPPITRQXQAL 39 (88) T ss_dssp HHHHHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7999999999980-9-99999999888889999999999 No 280 >>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:1-82) Probab=43.52 E-value=20 Score=15.92 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=23.1 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||++.|.|++++.++.. T Consensus 22 ~~l~~~~G~~~~ti~~ia~~agvs~~t~Y~~F~ 54 (82) T 1rkt_A 22 KTVFKRKGFELTTXKDVVEESGFSRGGVYLYFS 54 (82) T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCC T ss_conf 999998192408899999985899652101689 No 281 >>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82) Probab=43.50 E-value=21 Score=15.76 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .++..+||+.+|.|+++|...|+.|. T Consensus 39 ~l~e~~La~~~~vSr~~vr~Al~~L~ 64 (82) T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLA 64 (82) T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 66999999998988899999999999 No 282 >>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA); HET: DNA; 2.30A {Rattus norvegicus} (A:1-82) Probab=43.16 E-value=21 Score=15.73 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=24.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH Q ss_conf 999998521011104679999743------3787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr 174 (300) |..|+.-.=..|+||.+++..+|. |+++|++.=+ T Consensus 9 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQTtIcRFE~ 48 (82) T 1au7_A 9 ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN 48 (82) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 9998886502798864677776641588655446676201 No 283 >>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82) Probab=42.82 E-value=21 Score=15.70 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=26.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) -+-|.-|++..+++..+||+.+|.|...|...+ T Consensus 5 irIY~LLlek~~m~i~eI~keLglSeR~VRe~v 37 (64) T 1sfx_A 5 VRIYSLLLERGGXRVSEIARELDLSARFVRDRL 37 (64) T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHH T ss_conf 999999980488879999999756701899999 No 284 >>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:) Probab=42.57 E-value=21 Score=15.73 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=19.9 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|-.+||+..|.|++++.++. T Consensus 21 a~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (200) T 2hyj_A 21 AAEIASEEGLDGITIGRLAEELEMSKSGVHKHF 53 (200) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 999999739441679999998783801276565 No 285 >>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} (A:1-90) Probab=42.54 E-value=22 Score=15.67 Aligned_cols=40 Identities=10% Similarity=0.064 Sum_probs=23.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 1104679999743378778656565435899998764210 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) .-||+++|..+|.+|++.-.--.=..---+-..+|.+..+ T Consensus 48 KkTqeelA~ElGi~R~~L~~WrTqn~~Fi~y~n~lAd~~L 87 (90) T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL 87 (90) T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 7579999999574699999886044669999999999999 No 286 >>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:1-91) Probab=42.48 E-value=22 Score=15.66 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=26.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998521011104679999743378778656565 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ++.-..|..+.+. | +-...|+.+|.|+++|+..|+=+ T Consensus 4 ~~~l~~f~~i~~~-~-s~s~AA~~L~isq~avS~~i~~L 40 (91) T 3fxq_A 4 LQTLQALICIEEV-G-SLRAAAQLLHLSQPALSAAIQQL 40 (91) T ss_dssp HHHHHHHHHHHHH-S-CHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 8999999999982-9-99999999898889999999999 No 287 >>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} (A:66-285) Probab=42.39 E-value=22 Score=15.66 Aligned_cols=29 Identities=24% Similarity=0.125 Sum_probs=22.6 Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 35789998-768988999999988631001 Q gi|254780805|r 48 VPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 48 ~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) .+||.||- ..++.+.++++++-.+++|+. T Consensus 113 ~~np~NPtG~~~~~~~~~~l~~~~~~~~~~ 142 (220) T 2q7w_A 113 HGCCHNPTGIDPTLEQWQTLAQLSVEKGWL 142 (220) T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCE T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHCCCCCE T ss_conf 458889988406889998999986166416 No 288 >>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} (A:) Probab=42.27 E-value=20 Score=15.88 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=9.4 Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 7642100135433346411234556665 Q gi|254780805|r 101 AKMASLSEVPVIIRNVDNKSSLEIAIVE 128 (300) Q Consensus 101 a~~~g~~~ip~iv~~~~d~~~~~~~l~E 128 (300) |+.+|... ..+-.-.++.+.+..++++ T Consensus 40 a~~agvs~-~tiY~~F~~K~~L~~~~~~ 66 (195) T 2iu5_A 40 MQTAKIRR-QTFYNYFQNQEELLSWIFE 66 (195) T ss_dssp HHHHTSCG-GGGGGTCSSHHHHHHHHHH T ss_pred HHHHCCCH-HHHHCCCCCHHHHHHHHHH T ss_conf 99859684-3330127999999999999 No 289 >>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250) Probab=42.06 E-value=22 Score=15.62 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=20.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 111046799997433787786565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...|+.+||+.+|.+++++++.+. T Consensus 18 ~~~t~~~la~~l~~~~~~~s~~i~ 41 (95) T 1p4x_A 18 NIVLLKDLIETIHHKYPQTVRALN 41 (95) T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 967699999997888515999999 No 290 >>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... (B:1-71) Probab=41.82 E-value=22 Score=15.64 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=22.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..++.+.| .|..+||+..|.|++++.++.. T Consensus 12 ~~l~~~~G~~~~t~~~Ia~~agis~~t~y~~F~ 44 (71) T 3bqz_B 12 KELFIKNGYNATTTGEIVKLSESSKGNLYYHFK 44 (71) T ss_dssp HHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999997591517799999987909888814388 No 291 >>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} (A:) Probab=41.72 E-value=22 Score=15.61 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=21.8 Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011--1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG--YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|-++||++.|.|++++.++.. T Consensus 24 a~~l~~~~G~~~ti~~Ia~~agvs~~tiY~~F~ 56 (194) T 2q24_A 24 AVRVFSEEGLDAHLERIAREAGVGSGTLYRNFP 56 (194) T ss_dssp HHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCC T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHCC T ss_conf 999999869567799999983878011998779 No 292 >>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} (A:) Probab=41.03 E-value=23 Score=15.52 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=19.7 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---104679999743378778656 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +..+++.+.| .|..+||++.|.|++++.++. T Consensus 16 aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F 49 (183) T 1zk8_A 16 TAAEIADANGVQEVTLASLAQTLGVRSPSLYNHV 49 (183) T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCC T ss_conf 9999999709440579999998588943033228 No 293 >>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} (A:181-225,A:375-471) Probab=41.00 E-value=23 Score=15.52 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=44.7 Q ss_pred HHHHHCCCC-HHHHHHHHHHHHHHHHHH-----------HH-HHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 852101110-467999974337877865-----------65-65435899998764210167777764010046899997 Q gi|254780805|r 146 QLISEYGYT-QNDIGSIVGKSRSHVANI-----------LR-ILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVI 212 (300) Q Consensus 146 ~l~~~~~~t-~~~lA~~~G~s~s~V~~~-----------Lr-Ll~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~I 212 (300) .++.+.-|| ++++|+++|.|-+.|..- -- |..=-+++-....+|.+|...+|+.+. .++++.- T Consensus 10 eilrenpwtphdeiarrlglsvsevegekdpessgiesiagilatdleeier~yeegrlseeayraave----iqlaelt 85 (142) T 2csb_A 10 EILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIESIAGILATDLEEIERXYEEGRLSEEAYRAAVE----IQLAELT 85 (142) T ss_dssp HHHHHCTTCCHHHHHHHHTCCHHHHHCCSSSSSCSHSSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHH----HHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHH T ss_conf 999608999728999984885334137779420118988889860499999998715644899988898----7799776 Q ss_pred HHCCCCHHHHHHHHHHHHCC Q ss_conf 42224778999999764102 Q gi|254780805|r 213 VSKKMSVRDTEELVQEQDNK 232 (300) Q Consensus 213 i~~~LSVRe~E~lVk~~~~~ 232 (300) -+++..-..+|.+.+.+-++ T Consensus 86 kkegvgrktaerllrafgnp 105 (142) T 2csb_A 86 KKEGVGRKTAERLLRAFGNP 105 (142) T ss_dssp TSTTCCHHHHHHHHHHHSSH T ss_pred HHCCCCHHHHHHHHHHHCCH T ss_conf 54064565799999970998 No 294 >>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} (A:) Probab=40.96 E-value=23 Score=15.52 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=22.4 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|.++||++.|.|++++.++.. T Consensus 19 a~~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~ 52 (194) T 2nx4_A 19 AWRLIAARGIEAANMRDIATEAGYTNGALSHYFA 52 (194) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCC T ss_conf 9999997592506599999997909988853079 No 295 >>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} (A:) Probab=40.81 E-value=23 Score=15.50 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=19.5 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|-.+||+..|.|++++.++. T Consensus 44 a~~l~~~~G~~~~ti~~IA~~agvs~~tiY~yF 76 (221) T 3g7r_A 44 ATRIFYAEGIHSVGIDRITAEAQVTRATLYRHF 76 (221) T ss_dssp HHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC T ss_conf 999999849150749999998789968411068 No 296 >>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} (A:) Probab=40.50 E-value=23 Score=15.47 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=22.5 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|-.+||++.|.|++++.++.. T Consensus 11 a~~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F~ 44 (179) T 2eh3_A 11 SKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCC T ss_conf 9999987393507599999986819340114289 No 297 >>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans} (A:1-74) Probab=40.28 E-value=13 Score=17.01 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=37.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 1046799997433787786565654358999987642101677777640100468999974222477899999976 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQE 228 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk~ 228 (300) +|-.++|+.+|.|..++.-+-+.--++|....--.....+..|.. ...........++|+.++.+++.. T Consensus 2 ~tI~e~a~~~gvs~~tLR~ye~~gLi~p~~r~~~g~R~Y~~~~i~-------~l~~I~~l~~~G~~l~~i~~~l~~ 70 (74) T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLD-------RLQQILFYRELGFPLDEVAALLDD 70 (74) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHH-------HHHHHHHHHHTTCCHHHHHHHHTC T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHH-------HHHHHHHHHHCCCCHHHHHHHHHC T ss_conf 518999999894999999987537868865699993100077889-------999999999969999999999957 No 298 >>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} (A:) Probab=40.19 E-value=23 Score=15.44 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=12.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 32 ~t~~~IA~~agvs~~t~Y~yF 52 (219) T 2w53_A 32 TTLEMIGARAGYTRGAVYWHF 52 (219) T ss_dssp CCHHHHHHHHTSCHHHHHTTC T ss_pred CCHHHHHHHHCCCCCHHHHHC T ss_conf 879999998688844087638 No 299 >>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} (A:) Probab=39.98 E-value=24 Score=15.42 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=18.6 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-.+||++.|.|++++.++. T Consensus 19 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 50 (193) T 2dg8_A 19 LDLIAEEGIARVSHRRIAQRAGVPLGSMTYHF 50 (193) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 99999729040679999999890999997663 No 300 >>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa} (A:) Probab=39.86 E-value=24 Score=15.43 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=15.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|.++||+..|.|++++.++. T Consensus 34 ~~si~~Ia~~agvs~~t~Y~yF 55 (215) T 3e7q_A 34 GASVRKICAEAGVSVGLINHHY 55 (215) T ss_dssp HCCHHHHHHHHTCCHHHHHHHC T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 0779999999794888898885 No 301 >>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus} (A:1-72) Probab=39.72 E-value=24 Score=15.39 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=32.5 Q ss_pred CCCCHHHHHHHHH--HHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999--85210111---046799997433787786565654 Q gi|254780805|r 133 KDLNPLEEALGYE--QLISEYGY---TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 133 ~dl~p~e~A~~~~--~l~~~~~~---t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) -.+++.++..+.. .-+++.|| +.+++|..+|.|...|.+.+.++. T Consensus 15 ~~~~~~~~~ia~~lI~~LD~~GyL~~~~~eia~~l~~~~~~ve~~l~~iq 64 (72) T 2k9m_A 15 LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 64 (72) T ss_dssp HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 89998999999999970898982567889999884788878999999997 No 302 >>3iuv_A Uncharacterized TETR family protein; APC6223, structural genomics, PSI-2, protein structure initiative; 2.55A {Streptomyces coelicolor A3} (A:) Probab=39.63 E-value=24 Score=15.38 Aligned_cols=30 Identities=3% Similarity=0.102 Sum_probs=17.9 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|-.+||++.|.|++++.++. T Consensus 19 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 51 (201) T 3iuv_A 19 AIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHF 51 (201) T ss_dssp HHHHHHTTCGGGCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 999999849030679999999785861798883 No 303 >>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} (A:1-82) Probab=39.62 E-value=24 Score=15.38 Aligned_cols=30 Identities=7% Similarity=0.101 Sum_probs=23.1 Q ss_pred HHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 985210--111046799997433787786565 Q gi|254780805|r 145 EQLISE--YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+ |+.|..+||+..|.|++++.++.. T Consensus 26 ~~l~~~~G~~~t~~~ia~~agvs~~~~Y~~F~ 57 (82) T 2rek_A 26 AAEVARHGADASLEEIARRAGVGSATLHRHFP 57 (82) T ss_dssp HHHHHHHGGGCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99999879788799999996949989998859 No 304 >>1d5y_A ROB transcription factor; protein-DNA complex, ROB transcription factor; HET: DNA; 2.70A {Escherichia coli} (A:1-104) Probab=39.44 E-value=20 Score=15.85 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=20.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|.+++|+.+|.|++++++.++ T Consensus 19 ~~~~~~la~~~~~S~~~l~r~f~ 41 (104) T 1d5y_A 19 PLSLDNVAAKAGYSKWHLQRMFK 41 (104) T ss_dssp SCCCHHHHTTTSSCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999998939999999999 No 305 >>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} (A:) Probab=39.24 E-value=24 Score=15.35 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=19.4 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+|+.+.| .|-.+||++.|.|++++.++. T Consensus 17 A~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~yF 49 (206) T 1vi0_A 17 AVEVIAENGYHQSQVSKIAKQAGVADGTIYLYF 49 (206) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCC T ss_conf 999999839340779999999598875798608 No 306 >>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} (A:) Probab=38.54 E-value=25 Score=15.28 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||+..|.|++++.++. T Consensus 25 s~~~Ia~~agvs~~t~Y~~F 44 (208) T 2g3b_A 25 RVNDVAEVAGVSPGLLYYHF 44 (208) T ss_dssp CHHHHHHHHTSCHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHCC T ss_conf 29999999890999994018 No 307 >>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} (C:) Probab=38.44 E-value=23 Score=15.53 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.9 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+--|+|.. ..+...|+|..++|+.+.+||-.|.+||. T Consensus 6 L~~~e~aql--DVm~~L~~slhemaR~i~rSR~~ir~Yl~ 43 (51) T 1tc3_C 6 LSDTERAQL--DVMKLLNVSLHEMSRKISRSRHCIRVYLK 43 (51) T ss_dssp CCHHHHHHH--HHHHHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 307899988--99999487699999999885999999956 No 308 >>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A (A:) Probab=38.01 E-value=25 Score=15.22 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=18.7 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-.+||++.|.|++++.++. T Consensus 24 ~~l~~~~G~~~~ti~~Ia~~aGvs~~tiY~~F 55 (220) T 3lhq_A 24 LRLFSQQGVSATSLAEIANAAGVTRGAIYWHF 55 (220) T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC T ss_conf 99999849140779999998588933477618 No 309 >>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} (A:1-136) Probab=37.66 E-value=26 Score=15.19 Aligned_cols=24 Identities=13% Similarity=0.249 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 110467999974337877865656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) -++-++||+.+|.|+++|.+.|.- T Consensus 28 ~~~s~~IA~~~~i~~~~l~kil~~ 51 (136) T 3k69_A 28 KVASRELAQSLHLNPVXIRNILSV 51 (136) T ss_dssp CBCHHHHHHHHTSCGGGTHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 736999999889099999999999 No 310 >>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} (A:) Probab=37.59 E-value=26 Score=15.18 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=20.9 Q ss_pred HHHHHH--CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 985210--11104679999743378778656 Q gi|254780805|r 145 EQLISE--YGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~--~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+ |+.|-.+||++.|.|++++.++. T Consensus 30 ~~l~~~~G~~~si~~IA~~agvs~~tiY~~F 60 (215) T 2hku_A 30 TELFLEHGEGVPITQICAAAGAHPNQVTYYY 60 (215) T ss_dssp HHHHHHHCTTSCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCHHHCC T ss_conf 9999985867859999998652214111143 No 311 >>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} (A:30-109) Probab=37.57 E-value=26 Score=15.18 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=25.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..| .+...|.++||+.+|.+...+.+.||.+. T Consensus 16 f~~L-~~~p~t~~eLA~~~g~~~~~l~rllr~l~ 48 (80) T 1tw3_A 16 VDHI-LAGARTVKALAARTDTRPEALLRLIRHLV 48 (80) T ss_dssp HHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 7897-46998999999887909999999999998 No 312 >>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} (A:) Probab=37.24 E-value=26 Score=15.15 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=27.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|.++-+. ...| ..-|+|...|++..|.|.++++|.|. T Consensus 6 ~~dWh~adI---~AaL-~krG~sLa~lsr~~gls~stl~nal~ 44 (74) T 1neq_A 6 ARDWHRADV---IAGL-KKRKLSLSALSRQFGYAPTTLANALE 44 (74) T ss_dssp SSSCCHHHH---HHHH-HTTSCCHHHHHHHHSSCHHHHHHTTT T ss_pred CCCCCHHHH---HHHH-HHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 688899999---9999-99688799999990998789999883 No 313 >>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} (A:) Probab=37.15 E-value=26 Score=15.14 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=21.1 Q ss_pred HHHHH--CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210--111046799997433787786565 Q gi|254780805|r 146 QLISE--YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+ |+.|-.+||+..|.|++++.++.. T Consensus 20 ~l~~~~G~~~t~~~IA~~agvs~~tiY~~F~ 50 (190) T 3jsj_A 20 ALTYRDGVGIGVEALCKAAGVSKRSXYQLFE 50 (190) T ss_dssp HHHHHHCTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCHHHCCC T ss_conf 9999869678599999997898230012189 No 314 >>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, DNA-binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} (A:) Probab=37.04 E-value=26 Score=15.13 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=33.8 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0489999999852101110467999974337877865656543589999876421 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEE 190 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~ 190 (300) .-++.+..|-.-.-...+|.+++|+.+|.|++++++.++-...++ .+.+..-. T Consensus 169 ~~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~s~--~~~i~~~R 221 (276) T 3gbg_A 169 DAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKF--RELINSIR 221 (276) T ss_dssp CHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCCH--HHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCH--HHHHHHHH T ss_conf 999999999985738999999999997979999999999949989--99999999 No 315 >>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} (A:) Probab=36.99 E-value=26 Score=15.12 Aligned_cols=30 Identities=23% Similarity=0.124 Sum_probs=19.8 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|-.+||+..|.|++++.++. T Consensus 16 a~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~yF 48 (197) T 2gen_A 16 ALACFSEHGVDATTIEXIRDRSGASIGSLYHHF 48 (197) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHT T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHC T ss_conf 999999869351779999998484964134518 No 316 >>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor} (A:31-230) Probab=36.88 E-value=25 Score=15.26 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.5 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|..+||++.|.|++++.++. T Consensus 11 ~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F 41 (200) T 2iai_A 11 QVFIERGYDGTSXEHLSKAAGISKSSIYHHV 41 (200) T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHTTTC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHCC T ss_conf 9999859362609999998693876676607 No 317 >>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:) Probab=36.83 E-value=26 Score=15.11 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=8.9 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-.+||+..|.|++++.++ T Consensus 29 si~~IA~~agvs~~tlY~~ 47 (235) T 2fbq_A 29 SLRLITSKAGVNLAAVNYH 47 (235) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999979398899998 No 318 >>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} (A:1-69) Probab=36.76 E-value=27 Score=15.10 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=23.8 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---1046799997433787786565 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +...++.+.| .|..+||+..|.|++++.++.. T Consensus 12 aa~~~~~~~G~~~~t~~~Ia~~~gis~~t~Y~~F~ 46 (69) T 3egq_A 12 AALRLYXKKPPHEVSIEEIAREAKVSKSLIFYHFE 46 (69) T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCS T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC T ss_conf 99999987292306799999986839420765089 No 319 >>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} (A:) Probab=36.68 E-value=27 Score=15.09 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=13.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||+..|.|++++.++. T Consensus 38 ~t~~~IA~~agvs~~tiY~yF 58 (208) T 3cwr_A 38 XTXEGVASEAGIAKKTLYRFA 58 (208) T ss_dssp CCHHHHHHHHTCCHHHHHHHC T ss_pred CCHHHHHHHCCCCCCCCCCCC T ss_conf 479999987599877655789 No 320 >>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:) Probab=36.59 E-value=16 Score=16.48 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=24.2 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654358 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~ 180 (300) +..-+|.+|.|+.+|.|++++.++.+=..+|+ T Consensus 13 ek~~ltv~Eaa~ylgis~~~ly~l~~~~~ip~ 44 (70) T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAEENKNAN 44 (70) T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHHHCTTCS T ss_pred HHHEECHHHHHHHHCCCHHHHHHHHHHCCCCC T ss_conf 74405799999995504999999998588998 No 321 >>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} (A:) Probab=36.52 E-value=27 Score=15.07 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=21.3 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|.++||+..|.|++++.++. T Consensus 21 a~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F 53 (198) T 3cjd_A 21 AEAQIEAEGLASLRARELARQADCAVGAIYTHF 53 (198) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 999999749352579999999787545899984 No 322 >>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} (A:1-58) Probab=36.50 E-value=26 Score=15.11 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=20.7 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---10467999974337877865 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~ 172 (300) +|+.+.| .|-.+||+..|.|++++.++ T Consensus 27 ~lf~~~G~~~~ti~~Ia~~agvs~~~lY~h 56 (58) T 2oi8_A 27 EQIATAGASALSLNAIAKRXGXSGPALYRY 56 (58) T ss_dssp HHHHHHCTTSCCHHHHHHHTTCCHHHHHTT T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 999982945388999999968872048675 No 323 >>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} (A:1-74) Probab=36.43 E-value=27 Score=15.07 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=22.7 Q ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9852101---11046799997433787786565 Q gi|254780805|r 145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+. +.|-.+||+..|.|++++.++.. T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~~gvs~~t~Y~yF~ 50 (74) T 2d6y_A 18 VAEFARHGIAGARIDRIAAEARANKQLIYAYYG 50 (74) T ss_dssp HHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999997491407799999985919889967877 No 324 >>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} (A:) Probab=36.42 E-value=27 Score=15.06 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=17.4 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|-.+||++.|.|++++.++. T Consensus 22 ~l~~~~G~~~~ti~~IA~~agvs~~tiY~yF 52 (196) T 3he0_A 22 QLIAESGFQGLSXQKLANEAGVAAGTIYRYF 52 (196) T ss_dssp HHHHHHCTTTCCHHHHHHHHTSCHHHHHTTC T ss_pred HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC T ss_conf 9999739130679999998099978651118 No 325 >>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} (A:26-108) Probab=36.38 E-value=27 Score=15.06 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=24.7 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 210111046799997433787786565654 Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +.+...|.+++|+++|.+...+.+.||.+. T Consensus 20 L~~gp~t~~eLA~~~~~~~~~l~rlLr~L~ 49 (83) T 1qzz_A 20 LLAGADTLAGLADRTDTHPQALSRLVRHLT 49 (83) T ss_dssp HHTTCCSHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 607998999999885919899999999998 No 326 >>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81) Probab=36.31 E-value=27 Score=15.05 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=23.7 Q ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99852101---11046799997433787786565 Q gi|254780805|r 144 YEQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+. +.|..+||+..|.|+++|.++.. T Consensus 25 a~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~ 58 (81) T 2qtq_A 25 ASNIXREGDVVDISLSELSLRSGLNSALVKYYFG 58 (81) T ss_dssp HHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999997196637899999997909889977756 No 327 >>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} (A:) Probab=36.28 E-value=27 Score=15.05 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=12.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|..+||++.|.|++++.++. T Consensus 29 ~~s~~~IA~~agvs~~t~Y~~F 50 (213) T 2g7g_A 29 DFRXPDLARHLNVQVSSIYHHA 50 (213) T ss_dssp SCCHHHHHHHTTSCHHHHHTTS T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 9609999999692854442566 No 328 >>2uxu_A HTH-type transcriptional regulator TTGR; repressor protein, transcription regulation, multidrug binding protein; HET: NAR; 2.3A {Pseudomonas putida} PDB: 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* (A:) Probab=36.24 E-value=27 Score=15.05 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=20.8 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|-.+||++.|.|++++.++.. T Consensus 20 A~~l~~~~G~~~~si~~IA~~agvs~~tiY~~F~ 53 (210) T 2uxu_A 20 AERAFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210) T ss_dssp HHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCC T ss_conf 9999998593528899999986889543764189 No 329 >>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} (A:15-79) Probab=36.18 E-value=27 Score=15.04 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=34.7 Q ss_pred HHHHHHHCCCCCHHHHHHHHH--HHHHHCC--CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 666543102210489999999--8521011--1046799997433787786565 Q gi|254780805|r 125 AIVENVQRKDLNPLEEALGYE--QLISEYG--YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 125 ~l~EN~~R~dl~p~e~A~~~~--~l~~~~~--~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|..|-++=.|++.|-..-++ +..++.. -|.+++|++.|.|..+|.+.+. T Consensus 6 ~LL~~Y~~LGLt~~El~lllql~~~~~~g~~fPs~~~La~~m~~s~~~i~~~l~ 59 (65) T 2vn2_A 6 LLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVR 59 (65) T ss_dssp HHHTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999983998789999999999987699999999999896979999999999 No 330 >>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} (A:) Probab=36.10 E-value=27 Score=15.03 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=18.6 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|..+||++.|.|++++.++. T Consensus 21 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F 51 (196) T 3col_A 21 AIILAEGPAGVSTTKVAKRVGIAQSNVYLYF 51 (196) T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHTTC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCCCCCC T ss_conf 9999719552889999998689967031058 No 331 >>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} (A:) Probab=36.04 E-value=27 Score=15.03 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=25.3 Q ss_pred HHHHHHHHHH--HHHCCCCHHHHHHHHH-HHHHHHHHHHH Q ss_conf 8999999985--2101110467999974-33787786565 Q gi|254780805|r 138 LEEALGYEQL--ISEYGYTQNDIGSIVG-KSRSHVANILR 174 (300) Q Consensus 138 ~e~A~~~~~l--~~~~~~t~~~lA~~~G-~s~s~V~~~Lr 174 (300) +=.|+.+..+ .+..+++-.+||+.|| ++.++|....+ T Consensus 30 ~~~aR~iamyL~r~~~~~sl~~Ig~~fg~rdhSTV~~a~~ 69 (94) T 1j1v_A 30 VARPRQXAXALAKELTNHSLPEIGDAFGGRDHTTVLHACR 69 (94) T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHH T ss_conf 8899999999999882899999999968998409999999 No 332 >>3gzi_A Transcriptional regulator, TETR family; YP_001095692.1, TETR family transcriptional regulator, structural genomics; 2.05A {Shewanella loihica pv-4} (A:) Probab=35.82 E-value=27 Score=15.00 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=19.2 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||+..|.|++++.++.. T Consensus 27 ~~l~~~~G~~~~si~~IA~~aGvs~~tlY~yF~ 59 (218) T 3gzi_A 27 RNLFIERPYAQVSIREIASLAGTDPGLIRYYFG 59 (218) T ss_dssp HHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHCCCC T ss_conf 999998392305799999986889640441599 No 333 >>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} (A:70-129) Probab=35.75 E-value=27 Score=15.00 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=22.4 Q ss_pred HHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101-11046799997433787786565 Q gi|254780805|r 146 QLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..+| |....+||.+.|.|..||.+.++ T Consensus 16 ~I~~eFnG~N~~eLArkY~lS~~~I~~Ii~ 45 (60) T 1rr7_A 16 RIWNDFNGRNVSELTTRYGVTFNTVYKAIR 45 (60) T ss_dssp HHHHHCCSSCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999990899899999998977999999999 No 334 >>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} (A:) Probab=35.53 E-value=28 Score=14.97 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||++.|.|++++.++. T Consensus 37 si~~IA~~agvs~~tiY~~F 56 (221) T 3c2b_A 37 TTSGLARAANCSKESLYKWF 56 (221) T ss_dssp CHHHHHHHHTCCHHHHHHHH T ss_pred CHHHHHHHHCCCCCCHHHHC T ss_conf 89999998589802052663 No 335 >>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} (A:) Probab=35.45 E-value=28 Score=14.97 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=12.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 39 ~ti~~IA~~agvs~~tiY~~F 59 (212) T 1pb6_A 39 TRLEQIAELAGVSKTNLLYYF 59 (212) T ss_dssp CCHHHHHHHTTSCHHHHHHHS T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 889999999794988897877 No 336 >>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor} (A:1-95) Probab=35.41 E-value=28 Score=14.96 Aligned_cols=30 Identities=23% Similarity=0.130 Sum_probs=22.9 Q ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9852101---11046799997433787786565 Q gi|254780805|r 145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+. +.|.++||+..|.+++.|.++.. T Consensus 58 ~~l~~~~G~~~~ti~~Ia~~agvs~~slY~~F~ 90 (95) T 2of7_A 58 YGLIRQQGYEATTVEQIAERAEVSPSTVLRYFP 90 (95) T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998095527899999997939989999869 No 337 >>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} (A:) Probab=35.17 E-value=28 Score=14.94 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=19.9 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|..+||++.|.|++++.++. T Consensus 48 A~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F 80 (214) T 2guh_A 48 AGRAFATRPYREITLKDIAEDAGVSAPLIIKYF 80 (214) T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 999999839030679999999398988998886 No 338 >>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} (A:30-78) Probab=34.95 E-value=5.2 Score=19.64 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.++|+.+|.|+++|.+.++.|. T Consensus 8 s~r~la~~~~vsr~Tv~~a~~~L~ 31 (49) T 3ic7_A 8 SVREYASIVEVNANTVXRSYEYLQ 31 (49) T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH T ss_pred CHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 899999875939999999999999 No 339 >>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} (A:) Probab=34.92 E-value=28 Score=14.91 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=17.2 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|-.+||+..|.|++++.++. T Consensus 20 ~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F 50 (209) T 2gfn_A 20 ALIAREGISAVTTRAVAEESGWSTGVLNHYF 50 (209) T ss_dssp HHHHHHCGGGCCHHHHHHHHSSCHHHHHHHT T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 9999839230779999999691999995425 No 340 >>2pbx_A Hemagglutinin/protease regulatory protein; quorum sensing, transcription factor, TETR family, DNA-binding, transcription regulation; 2.20A {Vibrio cholerae 2740-80} (A:) Probab=34.91 E-value=28 Score=14.91 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=19.0 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|-.+||++.|.|++++.++. T Consensus 28 ~l~~~~G~~~~ti~~IA~~agvs~~tiY~~F 58 (203) T 2pbx_A 28 EVFAKRGIGRGGHADIAEIAQVSVATVFNYF 58 (203) T ss_dssp HHHHHHCTTCCCHHHHHHHHTSCHHHHHHHS T ss_pred HHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC T ss_conf 9998719240779999988399854223268 No 341 >>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} (A:1-74) Probab=34.83 E-value=25 Score=15.25 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=34.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 10467999974337877865656543589999876421016777776401004689999742224778999999764 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQ 229 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk~~ 229 (300) +|-.++|+.+|.|.+++..+-+.--|+|.....-.-...+.-|.. ...........++|..++..+.... T Consensus 1 lti~e~a~~~gvs~~tLR~ye~~gll~p~~r~~~g~R~Y~~~di~-------~l~~I~~lr~~G~~l~~i~~~l~~~ 70 (74) T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLN-------ELTLLRQARQVGFNLEESGELVNLF 70 (74) T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHH-------HHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHH-------HHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 978999999891999999999878989876699984431075899-------9999999998399999999998513 No 342 >>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} (A:) Probab=34.77 E-value=28 Score=14.90 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=19.7 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-.+||++.|.|++++.++. T Consensus 19 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~yF 50 (215) T 1ui5_A 19 ADLFDRRGYESTTLSEIVAHAGVTKGALYFHF 50 (215) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC T ss_conf 99999849452889999998688945086519 No 343 >>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} (C:151-209) Probab=34.76 E-value=29 Score=14.90 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=24.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011104679999743378778656565435 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) .++.. |.+..+||+..|.||.+|.+.-+=+.|. T Consensus 20 ~mL~~-G~~is~IAk~~gisRqTVYRIK~dl~l~ 52 (59) T 2r0q_C 20 EMLEE-GQAISKIAKEVNITRQTVYRIKHDNGLS 52 (59) T ss_dssp HHHHT-TCCHHHHHHHHTCCHHHHHHHHTTCC-- T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHCCCC T ss_conf 99987-7999999999896999999999977998 No 344 >>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=34.75 E-value=24 Score=15.33 Aligned_cols=30 Identities=7% Similarity=0.132 Sum_probs=20.3 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|-.+||++.|.|++++.++. T Consensus 20 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~yF 52 (204) T 3eup_A 20 TAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNF 52 (204) T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 999999739462889999999790999997764 No 345 >>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} (A:231-343) Probab=34.68 E-value=29 Score=14.89 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.3 Q ss_pred CCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 9822899985898999999998375 Q gi|254780805|r 271 NNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 271 ~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) +..|.+.|.|.+.++|++|-..||- T Consensus 47 ~~~~~vRI~Y~~~~~fk~~Ak~lGi 71 (113) T 1fo8_A 47 KELGEVRVQYTGRDSFKAFAKALGV 71 (113) T ss_dssp TTCSEEEEECCSHHHHHHHHHHTTC T ss_pred CCCCCEEEEECCHHHHHHHHHHHCC T ss_conf 7887289997367789999987276 No 346 >>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} (A:42-232) Probab=34.23 E-value=29 Score=14.84 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=19.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..++.++|..+|.++.+|++.|. T Consensus 145 ~~~~~~la~~l~~sr~~v~r~l~ 167 (191) T 1zyb_A 145 KVKXDDLARCLDDTRLNISKTLN 167 (191) T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 76999999897989999999999 No 347 >>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Streptomyces coelicolor} (A:) Probab=34.10 E-value=29 Score=14.83 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=15.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|..+||++.|.|++++.++. T Consensus 60 ~~ti~~Ia~~agvs~~tiY~~F 81 (225) T 2id3_A 60 ALDLGEIARRAGVGKTTVYRRW 81 (225) T ss_dssp GCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHCCCCCCCCCCC T ss_conf 0779999998189966413578 No 348 >>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} (A:1-51) Probab=34.07 E-value=29 Score=14.83 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.7 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-++||++.|.+.+.|.++. T Consensus 19 ~~lf~~~G~~~~s~~~Ia~~aGvs~g~iY~~F 50 (51) T 3cdl_A 19 IAEFGDRGFEITSXDRIAARAEVSKRTVYNHF 50 (51) T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHC T ss_conf 99999749251889999998688966145308 No 349 >>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} (A:) Probab=33.88 E-value=29 Score=14.81 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=7.5 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-.+||++.|.|++++.++ T Consensus 45 si~~IA~~agvs~~t~Y~~ 63 (231) T 2zcx_A 45 TLTDIAATVGMHKSALLRY 63 (231) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999969598999788 No 350 >>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} (A:1-74) Probab=33.78 E-value=23 Score=15.47 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=36.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 1104679999743378778656565435899998764210167777764010046899997422247789999997 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQ 227 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk 227 (300) -+|-.++|+.+|.+.+++..+-+.--++|+....=.-...+..|.. ...........+++..++.+++. T Consensus 4 ~yti~eva~~~gvs~~tlR~ye~~gll~~~~r~~~g~R~Y~~~di~-------~l~~I~~l~~~G~~l~~i~~~l~ 72 (74) T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLY-------VLQQIQSFKHLGFSLGEIQNIIL 72 (74) T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTSCEEBCHHHHH-------HHHHHHHHHHTTCCHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHH-------HHHHHHHHHHCCCCHHHHHHHHH T ss_conf 7749999999894989999999878989762089995441076899-------99999999987989999999987 No 351 >>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3} (A:) Probab=33.77 E-value=30 Score=14.79 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=4.8 Q ss_pred HHHHHHHHHCC Q ss_conf 99999886310 Q gi|254780805|r 64 EDLCQSIKSHG 74 (300) Q Consensus 64 ~eLa~SI~~~G 74 (300) +....-+.++| T Consensus 23 ~aa~~l~~~~G 33 (237) T 2hxo_A 23 GAAVELLDTVG 33 (237) T ss_dssp HHHHHHHHHTT T ss_pred HHHHHHHHHHC T ss_conf 99999999719 No 352 >>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP} (A:) Probab=33.77 E-value=30 Score=14.79 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=19.2 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|-.+||++.|.|++++.++. T Consensus 25 ~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~yF 55 (204) T 2ibd_A 25 TLFAERGLRATTVRDIADAAGILSGSLYHHF 55 (204) T ss_dssp HHHHHHCSTTCCHHHHHHHTTSCHHHHHHHC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC T ss_conf 9999849341779999998688830688876 No 353 >>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A (A:) Probab=33.60 E-value=30 Score=14.78 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=23.0 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---1046799997433787786565 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..+++.+.| .|..+||++.|.|++++.++.. T Consensus 16 aa~~l~~~~G~~~~ti~~Ia~~agvs~~tiY~~F~ 50 (195) T 3frq_A 16 AATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFT 50 (195) T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC T ss_conf 99999998492307799999987899404887493 No 354 >>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:) Probab=33.38 E-value=30 Score=14.75 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=13.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-++||++.|.|++++.++. T Consensus 27 ~si~~Ia~~agvs~~tiY~yF 47 (191) T 1sgm_A 27 TGLNQIVKESGAPKGSLYHFF 47 (191) T ss_dssp CCHHHHHHHHCCCSCHHHHST T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 669999998790988998885 No 355 >>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3} (A:1-213) Probab=33.33 E-value=30 Score=14.75 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |..+||+..|.|++++.++. T Consensus 35 ti~~Ia~~agvs~~tiY~~F 54 (213) T 2qib_A 35 SIDEIASAAGISRPLVYHYF 54 (213) T ss_dssp CHHHHHHHHTSCHHHHHHHC T ss_pred CHHHHHHHHCCCHHHHHHHC T ss_conf 79999999794987999882 No 356 >>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} (A:) Probab=33.33 E-value=28 Score=14.94 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=9.4 Q ss_pred CCCCCCCHHHHHH-HHHHHHHCCC Q ss_conf 9987689889999-9998863100 Q gi|254780805|r 53 NPRNYFESEGLED-LCQSIKSHGI 75 (300) Q Consensus 53 ~pR~~~~~~~l~e-La~SI~~~G~ 75 (300) +++.....+.|-+ -..-+.++|. T Consensus 14 ~~~~~~~r~~Il~aA~~l~~~~G~ 37 (243) T 2g7l_A 14 PAKPALSRRWIVDTAVALXRAEGL 37 (243) T ss_dssp --CCCCCHHHHHHHHHHHHHHHCS T ss_pred CCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 988465999999999999997295 No 357 >>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} (A:1-73) Probab=33.26 E-value=30 Score=14.74 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998521011104679999743378778656 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) +...-+.+.+=.-|-.|.++|..+|.|+..|+... T Consensus 21 ~~ti~iAR~VLV~G~~~~evA~~~Glsrq~V~~~V 55 (73) T 2w7n_A 21 QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAV 55 (73) T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH T ss_conf 89999999999688209999999673098999999 No 358 >>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} (A:215-324) Probab=33.13 E-value=30 Score=14.73 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.3 Q ss_pred HHCCCCHHHHHHHHH-HHHHHHHHHHH Q ss_conf 101110467999974-33787786565 Q gi|254780805|r 149 SEYGYTQNDIGSIVG-KSRSHVANILR 174 (300) Q Consensus 149 ~~~~~t~~~lA~~~G-~s~s~V~~~Lr 174 (300) +..++|-.+||+.|| ++.++|....+ T Consensus 56 ~~~~~sl~~Ig~~fg~rdhsTV~~a~~ 82 (110) T 1l8q_A 56 KVCSASLIEIARAFKRKDHTTVIHAIR 82 (110) T ss_dssp HHHCCCHHHHHHHSSCCCSTHHHHHHH T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHH T ss_conf 885789999999948997369999999 No 359 >>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} (A:) Probab=33.05 E-value=22 Score=15.56 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=20.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656565435 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +++.++|+.||.|..||.+..+. -|| T Consensus 3 vNk~qlA~~fgVS~~Ti~~W~~~-GlP 28 (68) T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ-GMP 28 (68) T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT-TCC T ss_pred CCHHHHHHHHCCCHHHHHHHHHC-CCC T ss_conf 57999999979888999999987-998 No 360 >>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* (A:145-203) Probab=32.77 E-value=31 Score=14.69 Aligned_cols=35 Identities=26% Similarity=0.175 Sum_probs=29.3 Q ss_pred CCCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEE Q ss_conf 68978999999999973987999717982289998 Q gi|254780805|r 245 EKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIK 279 (300) Q Consensus 245 ~k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~ 279 (300) -...++.-|.+-|..+|+.+++|...+++-+|-|+ T Consensus 23 Ft~~Ev~~L~~~L~~kf~L~~si~~~~~qy~IyI~ 57 (59) T 3c0w_A 23 FTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYID 57 (59) T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEEC T ss_pred CCHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEEE T ss_conf 99999999999999871947999965966899993 No 361 >>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* (A:) Probab=32.45 E-value=31 Score=14.66 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=5.4 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 4679999743378778 Q gi|254780805|r 155 QNDIGSIVGKSRSHVA 170 (300) Q Consensus 155 ~~~lA~~~G~s~s~V~ 170 (300) ..+||+..|.|+++|. T Consensus 67 i~~IA~~agvs~~tiY 82 (256) T 3g1l_A 67 VDDLAKGAGISRPTFY 82 (256) T ss_dssp HHHHHHHHTCCHHHHH T ss_pred HHHHHHHHCCCHHHHH T ss_conf 9999999790998883 No 362 >>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} (A:) Probab=32.05 E-value=26 Score=15.15 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=20.5 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+.| .|-.+||++.|.|++++.++.. T Consensus 14 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 45 (189) T 3geu_A 14 TLFSEKGYDGTTLDDIAKSVNIKKASLYYHFD 45 (189) T ss_dssp HHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99997493637699999987909768877779 No 363 >>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A (A:) Probab=32.01 E-value=32 Score=14.61 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=21.1 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|-.+||++.|.|++++.++.. T Consensus 16 a~~l~~~~G~~~~t~~~Ia~~agvs~~tiY~~F~ 49 (192) T 2zcm_A 16 AITLFSEKGYDGTTLDDISKSVNIKKASLYYHYD 49 (192) T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999987393506699999987909999967638 No 364 >>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} (B:210-292) Probab=32.00 E-value=32 Score=14.61 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=39.5 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEECCC-------CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 68988999999988631001550462056-------54453335756777776421001 Q gi|254780805|r 57 YFESEGLEDLCQSIKSHGIIQPLIVRAID-------NGLYKIIAGERRFRAAKMASLSE 108 (300) Q Consensus 57 ~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~-------~g~y~ii~G~rR~rAa~~~g~~~ 108 (300) .+++.++++|.+-+...|+ .|+++.... +|.|.+-.|...+...+.+|-.. T Consensus 18 ~~~pgDi~elK~i~~~fGl-~~~iLpD~S~slDgp~~~~~~~~~GGT~leei~~~g~a~ 75 (83) T 1qgu_B 18 ETYLGNFRVLKRMMEQMAV-PCSLLSDPSEVLDTPADGHYRMYSGGTTQQEMKEAPDAI 75 (83) T ss_dssp CCCHHHHHHHHHHHHHHTC-CEEESSCTTTTTSCCCSSCCCSCCCCBCHHHHHHGGGEE T ss_pred CCCCCCHHHHHHHHHHHCC-CEEECCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC T ss_conf 7883459999999998199-557657703214666566642048998899999876264 No 365 >>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, chloroplast, plastid; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* (A:93-310) Probab=31.88 E-value=32 Score=14.60 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=25.5 Q ss_pred HCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 8235789998-768988999999988631001 Q gi|254780805|r 46 SIVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 46 ~i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) -+.+||.||- ..++.+.+++|++-.+++|.. T Consensus 110 i~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ 141 (218) T 3ei9_A 110 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSI 141 (218) T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCE T ss_pred EEECCCCCHHHHHHHHHCCCCCCCCCCCCCEE T ss_conf 99789875455454320023322333322125 No 366 >>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} (A:1-60) Probab=31.70 E-value=32 Score=14.58 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=21.6 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---1104679999743378778656 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+. +.|.++||+..|.|++++.++. T Consensus 25 ~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F 55 (60) T 3ljl_A 25 DQLLRLGYDKXSYTTLSQQTGVSRTGISHHF 55 (60) T ss_dssp HHHHHTHHHHCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 9998719020779999998688860898888 No 367 >>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:) Probab=31.67 E-value=32 Score=14.58 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=19.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .+.|..+||+.||.++..|.+.| T Consensus 28 ~~~tA~~lAk~Lg~~Kk~VNr~L 50 (75) T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQL 50 (75) T ss_dssp CEECHHHHHHHTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHCCHHHHHHHHH T ss_conf 42219999988630087888999 No 368 >>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} (A:) Probab=31.67 E-value=32 Score=14.58 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=13.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||++.|.|++++.++. T Consensus 45 ~ti~~Ia~~agvs~~tlY~yF 65 (216) T 1t56_A 45 ISVDDLAKGAGISRPTFYFYF 65 (216) T ss_dssp CCHHHHHHHHTCCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHCCC T ss_conf 779999999685866660358 No 369 >>3bhq_A Transcriptional regulator; NP_105615.1, bacterial regulatory proteins, TETR family, structural genomics; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099} (A:) Probab=31.53 E-value=32 Score=14.56 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=20.0 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|-.+||+..|.|++++.++. T Consensus 21 A~~l~~~~G~~~~t~~~IA~~aGvs~~~iy~yF 53 (211) T 3bhq_A 21 ATAAFISKGYDGTSXEEIATKAGASKQTVYKHF 53 (211) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC T ss_conf 999999849351779999998487901387538 No 370 >>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} (A:) Probab=31.52 E-value=32 Score=14.56 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=16.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|..+||+..|.|+++|.++. T Consensus 42 ~~si~~Ia~~agvs~~tiY~~F 63 (207) T 3bjb_A 42 RVQXHEVAKRAGVAIGTLYRYF 63 (207) T ss_dssp GCCHHHHHHHHTCCHHHHHHHC T ss_pred CCCHHHHHHHHCCCCCHHHHHC T ss_conf 0669999998683912064665 No 371 >>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} (A:) Probab=31.48 E-value=32 Score=14.56 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=18.2 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-.+||++.|.|++++.++. T Consensus 24 ~~l~~~~G~~~~si~~IA~~agvs~~t~Y~yF 55 (199) T 3crj_A 24 YRALREHGYADLTIQRIADEYGKSTAAVHYYY 55 (199) T ss_dssp HHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 99999739251889999999791999995427 No 372 >>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=31.42 E-value=32 Score=14.55 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=7.1 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVAN 171 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~ 171 (300) |-.+||+..|.|++++.+ T Consensus 33 ti~~IA~~agvs~~tiY~ 50 (216) T 3f0c_A 33 TXNEIASDVGXGKASLYY 50 (216) T ss_dssp CHHHHHHHHTCCHHHHHH T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 899999987919878977 No 373 >>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A (A:) Probab=31.34 E-value=32 Score=14.54 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=22.0 Q ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011-1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG-YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|..+||+..|.|++++.++.. T Consensus 23 a~~l~~~~G~~ti~~Ia~~agvs~~tiY~~F~ 54 (190) T 2v57_A 23 AMLVLADHPTAALGDIAAAAGVGRSTVHRYYP 54 (190) T ss_dssp HHHHHTTCTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99999886997499999987849888977709 No 374 >>1m7y_A ACC synthase, 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, pyridoxal phosphate, lyase; HET: PPG; 1.60A {Malus x domestica} (A:109-303) Probab=31.17 E-value=33 Score=14.52 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=23.3 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||+||- ..++.+.++++++=.+++|+. T Consensus 88 ~~~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ 118 (195) T 1m7y_A 88 LVTNPSNPLGTTMTRNELYLLLSFVEDKGIH 118 (195) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCE T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 9789999844120099999997522117879 No 375 >>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} (A:1-73) Probab=31.06 E-value=33 Score=14.51 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=22.1 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+.| .|..+||+..|.|++++.++.. T Consensus 23 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~ 54 (73) T 2fq4_A 23 ELLLESGFKAVTVDKIAERAKVSKATIYKWWP 54 (73) T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCC T ss_conf 99998492407799999996928877510379 No 376 >>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:54-141) Probab=30.89 E-value=33 Score=14.49 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=23.6 Q ss_pred HHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHH Q ss_conf 999852101110467999974--33787786565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVG--KSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G--~s~s~V~~~Lr 174 (300) .+.++...--.|..+|+..+| .|.++|.+.|. T Consensus 15 ~i~~~~~~~~~t~~~l~~~lg~~vS~~Tv~r~L~ 48 (88) T 1u78_A 15 NVIRAASNSCKTARDIRNELQLSASKRTILNVIK 48 (88) T ss_dssp HHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH T ss_pred HHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 9999997624678899998187867999999999 No 377 >>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} (A:) Probab=30.64 E-value=33 Score=14.47 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=11.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 51 ~t~~~IA~~agvs~~t~Y~~F 71 (226) T 2pz9_A 51 ARVDRIAKQARTSKERVYAYF 71 (226) T ss_dssp CCHHHHHHHTTSCHHHHHHHC T ss_pred CCHHHHHHHHCCCCCCHHHCC T ss_conf 879999999489955524229 No 378 >>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP} (A:) Probab=30.63 E-value=33 Score=14.46 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |..+||+..|.|++++.++ T Consensus 36 t~~~IA~~agvs~~tiY~~ 54 (212) T 3knw_A 36 GLQEILKTSGVPKGSFYHY 54 (212) T ss_dssp CHHHHHHHHTCCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 8999999979099999888 No 379 >>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=30.49 E-value=33 Score=14.45 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=36.1 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 6654310221048999999985210111046799997433787786565 Q gi|254780805|r 126 IVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 126 l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |-.++.|..-+|-|...-+ .++..||..=..||..+|++..+|.++-+ T Consensus 3 L~p~~~k~~WT~eED~~L~-~~v~~~g~~W~~Ia~~~gRt~~q~r~R~~ 50 (66) T 2din_A 3 SGSSGKKTEWSREEEEKLL-HLAKLMPTQWRTIAPIIGRTAAQCLEHYE 50 (66) T ss_dssp CSSSSSCCCCCHHHHHHHH-HHHHHCTTCHHHHHHHHSSCHHHHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHH-HHHHHCCCHHHHHHHCCCCCHHHHHHHHH T ss_conf 9989889996889999999-99999197899804220788799999999 No 380 >>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} (A:1-88) Probab=30.33 E-value=34 Score=14.43 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=25.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111046799997433787786565654 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ..|..+.+ .| +-...|+.+|.|+++|++.++-++ T Consensus 9 ~~f~~v~~-~g-s~s~AA~~L~itq~avs~~i~~LE 42 (88) T 3hhg_A 9 TVFVQVVE-SG-SFSRAAEQLAMANSAVSRIVKRLE 42 (88) T ss_dssp HHHHHHHH-SS-SHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHH-CC-CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999998-19-999999998879899999999999 No 381 >>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80) Probab=30.19 E-value=34 Score=14.42 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=23.2 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++.+.| .|..+||++.|.|++++.++.. T Consensus 20 a~~l~~~~G~~~~t~~~Ia~~~gvs~~~~Y~~F~ 53 (80) T 3b81_A 20 IWDIFIANGYENTTLAFIINKLGISKGALYHYFS 53 (80) T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999997490407899999995989889987169 No 382 >>1wst_A MSAT, multiple substrate aminotransferase; alpha and beta; HET: PLP; 1.95A {Thermococcus profundus} (A:103-284) Probab=30.03 E-value=34 Score=14.40 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=26.1 Q ss_pred HCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 8235789998-768988999999988631001 Q gi|254780805|r 46 SIVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 46 ~i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) .+.+||.||- ..++.+.++++++-.+++|+. T Consensus 85 ii~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 116 (182) T 1wst_A 85 YTVSTFQNPAGVTMSVDRRKKLLELANEYDFL 116 (182) T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHTTCE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 33245688878778899999999876505857 No 383 >>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} (A:1-61) Probab=29.59 E-value=35 Score=14.35 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=29.1 Q ss_pred CCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 104899999998521011---104679999743378778656565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYG---YTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +++-|++ .|+++...|+ +-..++|..+|.....+.+.||-+ T Consensus 1 ~s~~e~~-lWq~i~p~~~~~P~wVRDlA~~~g~~E~~~R~llrk~ 44 (61) T 2pjp_A 1 FSEEQQA-IWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQA 44 (61) T ss_dssp CCHHHHH-HHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHH T ss_pred CCHHHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9989999-9999999974699989999999792999999999999 No 384 >>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* (A:263-440) Probab=29.58 E-value=13 Score=17.08 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=20.3 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++|..+||+.||++.|+|.+.++ T Consensus 122 ~~~~~sl~eIG~~fgrdhSTV~~a~~ 147 (178) T 2z4s_A 122 NYLKSSLRTIAEKFNRSHPVVVDSVK 147 (178) T ss_dssp -------------------------- T ss_pred HHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 98578999999886988459999999 No 385 >>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A* (A:1-67) Probab=29.55 E-value=35 Score=14.35 Aligned_cols=32 Identities=3% Similarity=0.052 Sum_probs=23.7 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---1046799997433787786565 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..+++.+.| .|-.+||+..|.|++++.++.. T Consensus 14 aa~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~ 48 (67) T 2opt_A 14 TALGILDAEGLDALSMRRLAQELKTGHASLYAHVG 48 (67) T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99999997294525799999997929879999879 No 386 >>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} (A:89-277) Probab=29.18 E-value=35 Score=14.31 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=23.6 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.++|.||. ..++.+.++++++-.+++|+. T Consensus 85 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ 115 (189) T 3jtx_A 85 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFI 115 (189) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHCCE T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHCCCE T ss_conf 9604556666556677899999765303513 No 387 >>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A (A:) Probab=29.12 E-value=35 Score=14.30 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=34.4 Q ss_pred CCCHHHHHHHHHHHHHHC----CCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH Q ss_conf 210489999999852101----110467999974-----33787786565654358999 Q gi|254780805|r 134 DLNPLEEALGYEQLISEY----GYTQNDIGSIVG-----KSRSHVANILRILKLPSSVR 183 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~----~~t~~~lA~~~G-----~s~s~V~~~LrLl~L~~~i~ 183 (300) +++.-..-..+++|++.- -+|-++|++.+. .+|.||++|-.-|..|+.-+ T Consensus 15 ~~S~~~ik~~I~~lI~~Edk~~PlSD~~I~~~L~~~Gi~IsRRTVaKYR~~L~Ip~s~~ 73 (76) T 2ahq_A 15 GLTQGELMKLIKEIVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRE 73 (76) T ss_dssp SCCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHHHTC------ T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCHHH T ss_conf 01699999999999986377899649999999997699742031999998829996421 No 388 >>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold; 1.75A {Escherichia coli} (A:1-112) Probab=28.96 E-value=36 Score=14.28 Aligned_cols=37 Identities=8% Similarity=-0.042 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998521011104679999743378778656565 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ++.-..|..+.+ .| +-...|+.+|.|+++|+++++-+ T Consensus 22 ~~~l~~~~~v~~-~g-S~t~AA~~l~is~~avs~~i~~L 58 (112) T 1b9m_A 22 PRRISLLKHIAL-SG-SISQGAKDAGISYKSAWDAINEX 58 (112) T ss_dssp HHHHHHHHHHHH-HS-SHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-HC-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 799999999999-69-99999999798999999999999 No 389 >>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; NP_940074.1, structural genomics, joint center for structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} (A:79-253) Probab=28.83 E-value=36 Score=14.27 Aligned_cols=50 Identities=26% Similarity=0.348 Sum_probs=32.6 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHH Q ss_conf 235789998-7689889999999886310015504620565445333575677777 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAA 101 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa 101 (300) +.++|.||- ..++.+.+++|.+-.+++|+. +++ ++....++.++.+.... T Consensus 77 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~--ii~---De~y~~~~~~~~~~~~~ 127 (175) T 3fdb_A 77 LLCNPYNPLGXVFAPEWLNELCDLAHRYDAR--VLV---DEIHAPLVFDGQHTVAA 127 (175) T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCE--EEE---ECTTGGGBSSSCCCCGG T ss_pred CCCCCCCCCCEEEHHHHHHHHHCCCCCCCCC--CCC---CCCCCCCCCCCCCCCCC T ss_conf 1223557443031254432332022334554--204---03444323443322111 No 390 >>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} (A:) Probab=28.33 E-value=28 Score=14.91 Aligned_cols=32 Identities=9% Similarity=0.007 Sum_probs=16.1 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 776421001354333464112345566654310 Q gi|254780805|r 100 AAKMASLSEVPVIIRNVDNKSSLEIAIVENVQR 132 (300) Q Consensus 100 Aa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R 132 (300) -|+.+|.. -..+.+-..+.+.+..++++.... T Consensus 61 IA~~agvs-~~t~Y~~F~sK~~L~~a~~~~~~~ 92 (237) T 3kkd_A 61 VAAEAQVP-LSATTYYFKDIDDLITDTFALFVE 92 (237) T ss_dssp HHHHHTSC-TTTC-----CHHHHHHHHHHHHHH T ss_pred HHHHHCCC-HHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99998929-899988788999999999999999 No 391 >>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} (A:1-10,A:102-163) Probab=28.10 E-value=37 Score=14.19 Aligned_cols=38 Identities=8% Similarity=0.233 Sum_probs=29.5 Q ss_pred HCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC Q ss_conf 3987999717982289998589899999999837564569 Q gi|254780805|r 261 VGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY 300 (300) Q Consensus 261 lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~~~~~ 300 (300) .+.||+..-.+. .|.+.-++.|+|...+..|++.||++ T Consensus 26 ~klKVqa~IQGd--~vRVtgKkrDDLQ~vIallk~~d~~~ 63 (72) T 1in0_A 26 SKIKVQTQIQGE--QVRVTGKSRDDLQAVIQLVKSAELGQ 63 (72) T ss_dssp HTCSEEEEEETT--EEEEEESCHHHHHHHHHHHHHSCCSS T ss_pred CCCCCEEEECCC--EEEECCCCHHHHHHHHHHHHHCCCCC T ss_conf 387405897583--78873688789999999987136799 No 392 >>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} (A:47-304) Probab=27.86 E-value=37 Score=14.16 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=19.9 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||+||- ..++++.+++|++-.+++|+. T Consensus 136 ~~~~p~NPTG~~~s~~~~~~l~~~~~~~~~~ 166 (258) T 1bw0_A 136 IVTNPSNPCGSNFSRKHVEDIVRLAEELRLP 166 (258) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCC T ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCCCCEE T ss_conf 3213333333320267776642032246746 No 393 >>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} (A:1-79) Probab=27.58 E-value=38 Score=14.13 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=23.4 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+.| .|-.+||+..|.|++++.++.. T Consensus 17 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (79) T 3dpj_A 17 ADELFYRQGFAQTSFVDISAAVGISRGNFYYHFK 50 (79) T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC T ss_conf 9999997493517799999985859533778559 No 394 >>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444} (A:1-66) Probab=27.45 E-value=38 Score=14.11 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=21.6 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---1104679999743378778656 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~L 173 (300) .++.+. +.|..+||+..|.|++++.++. T Consensus 22 ~l~~~~G~~~~s~~~Ia~~~gvs~~~iY~~F 52 (66) T 2ras_A 22 AIVEERGGAGLTLSELAARAGISQANLSRYF 52 (66) T ss_dssp HHHHHHTSSCCCHHHHHHHHTSCHHHHTTTC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999759020679999998684875687860 No 395 >>1u69_A Hypothetical protein; structural genomics, MSCG, protein structure initiative (PSI), midwest center for structural genomics, MCSG; 1.60A {Pseudomonas aeruginosa PAO1} (A:74-122) Probab=27.26 E-value=38 Score=14.09 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=19.6 Q ss_pred EEEEEEECCHHHHHHHHHHHCCCC Q ss_conf 289998589899999999837564 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLGEND 297 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~~~~ 297 (300) -.|.|.+.+.+|.+++.++|..+. T Consensus 5 ~sl~i~~~~~eE~~~~f~~Ls~gG 28 (49) T 1u69_A 5 FSFQVATDDQAETDRLWNAIVDNG 28 (49) T ss_dssp EEEEEEESSHHHHHHHHHHHHHTT T ss_pred EEEEEECCCHHHHHHHHHHHHCCC T ss_conf 699997798899999999986566 No 396 >>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} (A:92-298) Probab=27.12 E-value=38 Score=14.08 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=23.9 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||.||- ..++.+.++++++-.+++|+. T Consensus 90 ~~~~p~NPTG~~~s~~~~~~l~~~~~~~~~~ 120 (207) T 1yaa_A 90 LHSCAHNPTGLDPTSEQWVQIVDAIASKNHI 120 (207) T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCE T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 9437899837648999999999998645914 No 397 >>2np5_A Transcriptional regulator; TETR family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} (A:) Probab=27.02 E-value=38 Score=14.07 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=9.7 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||++.|.|++++.++. T Consensus 31 ti~~Ia~~agvs~~t~Y~~F 50 (203) T 2np5_A 31 SVREVAKRAGVSIGAVQHHF 50 (203) T ss_dssp CHHHHHHHHTCCHHHHHHHC T ss_pred CHHHHHHHHCCCCHHHCCCC T ss_conf 79999998689963220068 No 398 >>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B (A:) Probab=27.00 E-value=38 Score=14.06 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=19.2 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++| |...|+.||..++.|+..|| T Consensus 10 yv~~~G--Q~k~A~~lGv~Q~AIskAir 35 (66) T 2ovg_A 10 YAMRFG--QTKTAKDLGVYPSSINQAIH 35 (66) T ss_dssp HHHHHC--HHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHC--HHHHHHHCCCCHHHHHHHHH T ss_conf 999976--59899983977899999996 No 399 >>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157) Probab=26.40 E-value=22 Score=15.56 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=40.8 Q ss_pred CCCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHH-HHHCC Q ss_conf 02210489999999852---1011104679999743378778656565435899998764210----1677777-64010 Q gi|254780805|r 132 RKDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHART-LVSTS 203 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar~-Ll~~~ 203 (300) ..+|++.+-.. +.-+. +..++|+.+||+++|.++++|++.+ ..++..|-| +....|. ++.+. T Consensus 64 ~~~l~~~~~~v-L~~l~~~~~~~~~t~~~la~~l~~~~~~vs~~i---------~~L~~~Gli~r~~~~~DrR~~~i~lT 133 (157) T 2fbk_A 64 ASGLNAAGWDL-LLTLYRSAPPEGLRPTELSALAAISGPSTSNRI---------VRLLEKGLIERREDERDRRSASIRLT 133 (157) T ss_dssp TTTCCHHHHHH-HHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHH---------HHHHHHTSEECCC-------CCBEEC T ss_pred HCCCCHHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEEEECCCCCCCHHHHHCC T ss_conf 86989999999-999986289999699999999786875799999---------99986677123105654302454227 Q ss_pred H-HHHHHHHHHHC Q ss_conf 0-46899997422 Q gi|254780805|r 204 D-PLSLAQVIVSK 215 (300) Q Consensus 204 ~-~~~la~~Ii~~ 215 (300) + ..+++.++... T Consensus 134 ~~G~~~~~~~~~~ 146 (157) T 2fbk_A 134 PQGRALVTHLLPA 146 (157) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 8799999999999 No 400 >>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida} (A:1-68) Probab=26.36 E-value=39 Score=13.99 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=22.5 Q ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9852101---11046799997433787786565 Q gi|254780805|r 145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+. +.|-.+||+..|.|++++.++.. T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~~gvs~~~~y~~F~ 46 (68) T 2vpr_A 14 LILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVK 46 (68) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999997393517899999997919879988889 No 401 >>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S lyase; YP_813084.1, structural genomics, joint center for structural genomics; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} (A:83-268) Probab=26.26 E-value=40 Score=13.98 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=25.3 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||.||- ..++.+.+.+|++-.+.+|.. T Consensus 83 ~~~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ 113 (186) T 3dzz_A 83 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVL 113 (186) T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCE T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHCCEE T ss_conf 9806765201231188999999985414111 No 402 >>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP- binding, cell membrane; HET: CIT; 2.00A {Archaeoglobus fulgidus} (A:) Probab=25.96 E-value=40 Score=13.94 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 899999999997398799971798228999858989999999983756 Q gi|254780805|r 249 YLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 249 ~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) ....+++.|+..--..++++... +++.|.|.+.+++...++.+|.. T Consensus 19 C~~~Ie~~l~~~GV~~~~V~l~~--~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73) T 3fry_A 19 CVARVKKALEEAGAKVEKVDLNE--AVVAGNKEDVDKYIKAVEAAGYQ 64 (73) T ss_dssp GHHHHHHHHHHTTCEEEEECSSE--EEEEEEGGGHHHHHHHHHHTTCE T ss_pred HHHHHHHHHCCCCCEEEEEECCC--CEEEECCCCHHHHHHHHHHCCCC T ss_conf 99999998625894599998882--68996689999999999962997 No 403 >>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} (A:) Probab=25.11 E-value=42 Score=13.84 Aligned_cols=20 Identities=10% Similarity=0.233 Sum_probs=8.8 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |..+||++.|.|++++.++. T Consensus 51 si~~IA~~aGvs~~tiY~~F 70 (241) T 2hxi_A 51 SVRKLAASLGTDSSSLYRHF 70 (241) T ss_dssp CHHHHHHHTTSCHHHHHHHT T ss_pred CHHHHHHHHCCCHHHHHHHC T ss_conf 79999999791987999997 No 404 >>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis} (A:1-89) Probab=24.83 E-value=42 Score=13.81 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=24.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -..|..+.+. | +-...|+.+|.|++.|++.++-+ T Consensus 11 l~~f~~v~~~-g-s~t~AA~~l~isq~avS~~i~~L 44 (89) T 3isp_A 11 LAALAAVVEL-G-SFDAAAERLHVTPSAVSQRIKSL 44 (89) T ss_dssp HHHHHHHHHH-T-CHHHHHTTTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999980-9-99999999896989999999999 No 405 >>3cjl_A Domain of unknown function; YP_050007.1, structural genomics, joint center for structural genomics, JCSG; 2.20A {Pectobacterium atrosepticum SCRI1043} (A:1-70) Probab=24.72 E-value=42 Score=13.80 Aligned_cols=21 Identities=5% Similarity=0.192 Sum_probs=9.4 Q ss_pred EEEEEEECCHHHHHHHHHHHC Q ss_conf 289998589899999999837 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300) ..+++++.|-||+-.|+++++ T Consensus 18 ~~L~Fe~~nHDDif~Ivekv~ 38 (70) T 3cjl_A 18 RTLSFEFSLHDDLFKLLEKVD 38 (70) T ss_dssp CEEEEEEEESSCHHHHHHHHT T ss_pred CCEEEEECCHHHHHHHHHHHH T ss_conf 863676157789999999987 No 406 >>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} (A:1-167,A:265-324) Probab=24.41 E-value=18 Score=16.12 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=21.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+.+ .|.+-...|+.++.|++.||+.++.|+ T Consensus 11 ev~~-~~~sis~AA~~L~iSQpaVSk~Ik~LE 41 (227) T 1al3_A 11 EVVN-HNLNVSSTAEGLYTSQPGISKQVRMLE 41 (227) T ss_dssp -------------------------------- T ss_pred HHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9998-699899999998888899999999999 No 407 >>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:) Probab=24.23 E-value=43 Score=13.74 Aligned_cols=32 Identities=9% Similarity=0.047 Sum_probs=23.4 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011-1046799997433787786565 Q gi|254780805|r 143 GYEQLISEYG-YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.|.+... ++..+||+.+|.++..|++.|. T Consensus 15 IL~~L~e~g~p~~a~~Iae~lgv~kkeV~k~L~ 47 (67) T 2heo_A 15 ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67) T ss_dssp HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999768968799999997888899999999 No 408 >>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} (A:) Probab=24.16 E-value=28 Score=14.92 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||++.|.|++++.++. T Consensus 35 ti~~IA~~agvs~~tiY~yF 54 (210) T 2qco_A 35 SLSDIIKLSGGSYSNIYDGF 54 (210) T ss_dssp CHHHHHHHHCTTCTTCSSST T ss_pred CHHHHHHHCCCCCCHHHHHC T ss_conf 89999987299974036529 No 409 >>2b0l_A GTP-sensing transcriptional pleiotropic repressor CODY; DNA-binding, nucleotide-binding, transcription regulation, winged HTH motif.; 2.90A {Bacillus subtilis} (A:) Probab=24.07 E-value=43 Score=13.72 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=25.7 Q ss_pred HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998521011-----1046799997433787786565654 Q gi|254780805|r 142 LGYEQLISEYG-----YTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 142 ~~~~~l~~~~~-----~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+++...++++ +....+|+++|..||.|-|.||=+. T Consensus 28 eAi~hIf~eL~g~EG~lvASkIADrvgITRSVIVNALRKlE 68 (102) T 2b0l_A 28 EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE 68 (102) T ss_dssp HHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHH T ss_conf 99999999728965435308666762972899999998764 No 410 >>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii} (A:) Probab=23.83 E-value=29 Score=14.87 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=9.2 Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 764210013543334641123455666 Q gi|254780805|r 101 AKMASLSEVPVIIRNVDNKSSLEIAIV 127 (300) Q Consensus 101 a~~~g~~~ip~iv~~~~d~~~~~~~l~ 127 (300) |+.+|.. ...+-.-.++.+.+..+++ T Consensus 43 a~~agvs-~~tiY~~F~sK~~L~~~~~ 68 (211) T 3him_A 43 AASLDMS-PGAVYPHYKTKESLLYAIS 68 (211) T ss_dssp HHHTTCC-TTSSTTTCSSHHHHHHHHH T ss_pred HHHHCCC-CCCHHCCCCCHHHHHHHHH T ss_conf 9996899-6522223898999999999 No 411 >>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} (A:42-272) Probab=23.63 E-value=44 Score=13.67 Aligned_cols=29 Identities=21% Similarity=0.460 Sum_probs=19.6 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCC Q ss_conf 235789998-76898899999998863100 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGI 75 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~ 75 (300) +.+||+||- ..++.+.++++++...+++. T Consensus 121 i~~nP~NPtG~~~~~~~~~~i~~~a~~~~~ 150 (231) T 3euc_A 121 YLAYPNNPTGNLFDAADXEAIVRAAQGSVC 150 (231) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHTBTTSC T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCCCCCC T ss_conf 245555454644688885201112322323 No 412 >>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, lyase; HET: PLP AVG; 2.70A {Solanum lycopersicum} (A:106-298) Probab=23.58 E-value=44 Score=13.66 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=11.7 Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHCCC Q ss_conf 5789998-76898899999998863100 Q gi|254780805|r 49 PNPHNPR-NYFESEGLEDLCQSIKSHGI 75 (300) Q Consensus 49 ~~p~~pR-~~~~~~~l~eLa~SI~~~G~ 75 (300) +||+||- ..++.+.+++|.+--+++|+ T Consensus 90 ~~p~nptG~~~~~~~~~~l~~~a~~~~~ 117 (193) T 1iay_A 90 TNPSNPLGTTLDKDTLKSVLSFTNQHNI 117 (193) T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHTTTC T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCEE T ss_conf 7899998602416889998732455169 No 413 >>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} (A:) Probab=23.33 E-value=45 Score=13.63 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -++-++||+.+|.+++++.+.|+.| T Consensus 30 ~~s~~~IA~~~~i~~~~l~kil~~L 54 (149) T 1ylf_A 30 LCTSDYXAESVNTNPVVIRKIXSYL 54 (149) T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7759999999794999999999999 No 414 >>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase, cobalamin, lyase; 1.46A {Salmonella enterica} (A:36-260) Probab=23.03 E-value=45 Score=13.59 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=21.7 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.+||+||- ..++.+.+.++++-.++++.. T Consensus 116 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 146 (225) T 1lc5_A 116 FLCTPNNPTGLLPERPLLQAIADRCKSLNIN 146 (225) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCE T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHCCCEE T ss_conf 9838989866434477877778776315206 No 415 >>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} (A:17-95) Probab=22.85 E-value=46 Score=13.57 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=24.9 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..| .+...|.++||.++|.+...+.+.|+.+. T Consensus 16 fd~L-~~~p~t~~~La~~~g~~~~~~~~lLr~L~ 48 (79) T 2r3s_A 16 FTAI-SQGIESSQSLAQKCQTSERGXRXLCDYLV 48 (79) T ss_dssp HHHH-TTSEECHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHH-HCCCCCHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 8998-47999999999872989899999999999 No 416 >>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:) Probab=22.44 E-value=41 Score=13.85 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=20.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 99852101110467999974337877 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHV 169 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V 169 (300) +.+|+.+ ||+++++-+.+|.++..| T Consensus 11 I~~Lm~~-GYs~~~V~rAL~Ia~Nnv 35 (56) T 2juj_A 11 IENLMSQ-GYSYQDIQKALVIAQNNI 35 (56) T ss_dssp HHHHHTT-TCCHHHHHHHHHHTTTCS T ss_pred HHHHHHC-CCCHHHHHHHHHHHHCCH T ss_conf 9999986-665999999999987119 No 417 >>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:) Probab=21.72 E-value=48 Score=13.42 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=20.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 998521011104679999743378778 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVA 170 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~ 170 (300) +.+|+.+ ||+++++-+.+|..+..|. T Consensus 8 I~~Lm~~-GYs~~~v~rAL~Ia~Nnie 33 (46) T 2oo9_A 8 IENLXSQ-GYSYQDIQKALVIAQNNIE 33 (46) T ss_dssp HHHHHHT-TBCHHHHHHHHHHTTTCHH T ss_pred HHHHHHC-CCCHHHHHHHHHHHHCCHH T ss_conf 9999986-7769999999999871099 No 418 >>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} (A:1-94) Probab=21.39 E-value=49 Score=13.38 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=24.1 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998521011104679999743378778656565 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ..|..+.+. | +-...|+.+|.|++.|++.++-+ T Consensus 16 ~~f~av~~~-g-s~t~AA~~L~isq~avS~~i~~L 48 (94) T 2esn_A 16 LVFDALYRH-R-NVGTAASELAISASAFSHALGRL 48 (94) T ss_dssp HHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999980-9-99999999787989999999999 No 419 >>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} (A:55-290) Probab=21.31 E-value=49 Score=13.37 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=15.7 Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHCCC Q ss_conf 35789998-76898899999998863100 Q gi|254780805|r 48 VPNPHNPR-NYFESEGLEDLCQSIKSHGI 75 (300) Q Consensus 48 ~~~p~~pR-~~~~~~~l~eLa~SI~~~G~ 75 (300) .+||+||- ..++++.++++++-.+++|+ T Consensus 126 ~~~p~NPtG~~~~~~~~~~i~~~~~~~~~ 154 (236) T 2gb3_A 126 LSNPCNPTGVVYGKDEXRYLVEIAERHGL 154 (236) T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTC T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCE T ss_conf 41543201122019999999976511998 No 420 >>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} (A:109-506) Probab=21.06 E-value=17 Score=16.35 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=3.8 Q ss_pred CHHHHHHHHH Q ss_conf 7789999997 Q gi|254780805|r 218 SVRDTEELVQ 227 (300) Q Consensus 218 SVRe~E~lVk 227 (300) ++|..+.+++ T Consensus 340 ~~r~~~~~~~ 349 (398) T 3f8t_A 340 TRRQLESVER 349 (398) T ss_dssp CHHHHHHHHH T ss_pred EHHHHHHHHH T ss_conf 0899999999 No 421 >>2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8} (A:85-262) Probab=20.90 E-value=50 Score=13.32 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.4 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.++|+||- ..++.+.+.++++-.+++|+. T Consensus 79 i~~~p~nPtG~~~~~~~~~~i~~~~~~~~~~ 109 (178) T 2dou_A 79 LLNYPNNPTGAVADWGYFEEALGLARKHGLW 109 (178) T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCE T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHCEEE T ss_conf 8414456512446588899999987644278 No 422 >>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} (A:1-50) Probab=20.55 E-value=51 Score=13.27 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=21.1 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---1104679999743378778656 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+. +.|..+||+..|.|++++.++. T Consensus 19 ~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F 49 (50) T 2o7t_A 19 NLYRTHHHDSLTXENIAEQAGVGVATLYRNF 49 (50) T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHCCC T ss_conf 9999859140779999998588944212279 No 423 >>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} (A:99-287) Probab=20.26 E-value=52 Score=13.23 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=22.9 Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998-768988999999988631001 Q gi|254780805|r 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR-~~~~~~~l~eLa~SI~~~G~l 76 (300) +.++|.||- ..++.+.+.++++--+++|+. T Consensus 89 ~~~~p~NptG~~~~~~~~~~i~~~a~~~~i~ 119 (189) T 1yiz_A 89 IINTPHNPLGKVMDRAELEVVANLCKKWNVL 119 (189) T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCE T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 1165022454331388888887640201335 No 424 >>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli} (A:1-87) Probab=20.24 E-value=51 Score=13.28 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=31.0 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCH--H-HHHHHHHH Q ss_conf 89789999999999739879997179822899985898--9-99999998 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETN--E-QLKIICSL 292 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~--e-eLe~Il~k 292 (300) ++..+.+.=+.+++..|..+-++.. -+|+|++++.+. + -|+.|+.- T Consensus 21 ~~~~l~~vl~~ia~~~g~~iv~~~~-v~~~vs~~~~~~~~~~~l~~il~~ 69 (87) T 3gr5_A 21 KSSPVRAILNDFAANYSIPVFISSS-VNDDFSGEIKNEKPVKVLEKLSKL 69 (87) T ss_dssp EEEEHHHHHHHHHHHTTCCEEECTT-CCCEEEEEEEEECHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCEEEECCC-CCCCEEEECCCCCHHHHHHHHHHH T ss_conf 6998999999999986974995687-665201211778999999999986 No 425 >>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis} (A:) Probab=20.05 E-value=52 Score=13.20 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=37.3 Q ss_pred HHHHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCCC Q ss_conf 899999999997398799971798228999-858989999999983756456 Q gi|254780805|r 249 YLTDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDFE 299 (300) Q Consensus 249 ~i~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~~ 299 (300) ....+..+| ...|.++.|..++.-.+|.+ .|.+.++.+..+.+|+...++ T Consensus 22 ~A~~~~~~L-~~~g~~~~i~~~~~~yrV~vGpf~~~~~A~~~~~~lk~~g~~ 72 (79) T 1x60_A 22 NADSLASNA-EAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79) T ss_dssp HHHHHHHHH-HHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC T ss_pred HHHHHHHHH-HHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 999999999-865995699754863899988869999999999999983997 Done!