HHsearch results for GI: 254780805 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=93.56  E-value=0.07  Score=30.67  Aligned_cols=41  Identities=15%  Similarity=0.114  Sum_probs=34.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.+|++.|.+..... .. -|+|+.+||+.+|.|+++|++.++
T Consensus         4 ~~~lt~~~R~~I~~l-~~-~G~s~~~IAk~lg~s~stV~r~lk   44 (141)
T 1u78_A            4 GSALSDTERAQLDVM-KL-LNVSLHEMSRKISRSRHCIRVYLK   44 (141)
T ss_dssp             SCCCCHHHHHHHHHH-HH-TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH-HH-CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             887999999999999-99-799999999998957899999999