HHsearch results for GI: 254780805 and protein with PDBid: 1vk1_A
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=99.96 E-value=6.3e-32 Score=223.71 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=157.5
Q ss_pred CCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 60240389823578999876898899999998863100155046205--6544533357567777764210013543334
Q gi|254780805|r 38 SQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFRAAKMASLSEVPVIIRN 115 (300)
Q Consensus 38 ~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~--~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~ 115 (300)
.+..|++..|.+++.|||+.|+++.+++|+.||+++|++||++|++. ++|+|+||+|||||+||+.+|+++|||+|.|
T Consensus 12 ~~~~i~~~~i~~~~l~P~~~~~~~~~~~l~~sI~~~g~~~p~iv~~~~~~~~~y~ii~G~~R~~A~~~lg~~~ip~~~~d 91 (242)
T 1vk1_A 12 PVKKVEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILD 91 (242)
T ss_dssp CEECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEEC
T ss_pred CCEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHCCCCEEEEEEEE
T ss_conf 81572521461477899654899999999999998298668379733688976799655899999998799755489985
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 641123455666543102210489999999852------10111046799997433787786565654358999987642
Q gi|254780805|r 116 VDNKSSLEIAIVENVQRKDLNPLEEALGYEQLI------SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKE 189 (300)
Q Consensus 116 ~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~------~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~ 189 (300)
++|+++...++.||++|++++++|++.++.... .+++++++++++.+|++++++++.+++..+++.++..+..+
T Consensus 92 ~~~~~~~~~~~~en~~r~~l~~iE~~~~~~l~~~E~a~~~~~~~~~~~~~~~~gk~~~~i~~~~~l~~~~~~~l~~~~~~ 171 (242)
T 1vk1_A 92 YFDEGVKVYTWYPAFXGDVNXVIERLKAEGLEVIEDEKAEEXAEXGEIAFALIGEKSFAIPGGLEEQXKVSKVLDEMDQA 171 (242)
T ss_dssp TTSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHHTTSSSEEEESSSEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89789999998850003443469999985478077897776531389999995752254311576643179999987665
Q ss_pred HCCHHHHHHHHHCCH-H-H-----HHHHHHHHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 101677777640100-4-6-----89999742224778999999764102222
Q gi|254780805|r 190 EISLGHARTLVSTSD-P-L-----SLAQVIVSKKMSVRDTEELVQEQDNKKEK 235 (300)
Q Consensus 190 ~is~ghar~Ll~~~~-~-~-----~la~~Ii~~~LSVRe~E~lVk~~~~~~~~ 235 (300)
.. +.+.+..... . . .+...+....+|+++++++++........
T Consensus 172 ~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~v~~~v~~~~~~~~~ 221 (242)
T 1vk1_A 172 XE---IELVYYGLKEDAKADMEKGEIDYVFIRXAPTKEEVMELVKRGEVFSPX 221 (242)
T ss_dssp TS---SEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBSTT
T ss_pred HH---HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 77---788885586878887764358999986243799999999846767987