HHsearch results for GI: 254780805 and protein with PDBid: 1vk1_A

>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2
Probab=99.96  E-value=6.3e-32  Score=223.71  Aligned_cols=195  Identities=13%  Similarity=0.109  Sum_probs=157.5

Q ss_pred             CCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             60240389823578999876898899999998863100155046205--6544533357567777764210013543334
Q gi|254780805|r   38 SQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFRAAKMASLSEVPVIIRN  115 (300)
Q Consensus        38 ~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~--~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~  115 (300)
                      .+..|++..|.+++.|||+.|+++.+++|+.||+++|++||++|++.  ++|+|+||+|||||+||+.+|+++|||+|.|
T Consensus        12 ~~~~i~~~~i~~~~l~P~~~~~~~~~~~l~~sI~~~g~~~p~iv~~~~~~~~~y~ii~G~~R~~A~~~lg~~~ip~~~~d   91 (242)
T 1vk1_A           12 PVKKVEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILD   91 (242)
T ss_dssp             CEECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEEC
T ss_pred             CCEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHCCCCEEEEEEEE
T ss_conf             81572521461477899654899999999999998298668379733688976799655899999998799755489985


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             641123455666543102210489999999852------10111046799997433787786565654358999987642
Q gi|254780805|r  116 VDNKSSLEIAIVENVQRKDLNPLEEALGYEQLI------SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKE  189 (300)
Q Consensus       116 ~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~------~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~  189 (300)
                      ++|+++...++.||++|++++++|++.++....      .+++++++++++.+|++++++++.+++..+++.++..+..+
T Consensus        92 ~~~~~~~~~~~~en~~r~~l~~iE~~~~~~l~~~E~a~~~~~~~~~~~~~~~~gk~~~~i~~~~~l~~~~~~~l~~~~~~  171 (242)
T 1vk1_A           92 YFDEGVKVYTWYPAFXGDVNXVIERLKAEGLEVIEDEKAEEXAEXGEIAFALIGEKSFAIPGGLEEQXKVSKVLDEMDQA  171 (242)
T ss_dssp             TTSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHHTTSSSEEEESSSEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89789999998850003443469999985478077897776531389999995752254311576643179999987665


Q ss_pred             HCCHHHHHHHHHCCH-H-H-----HHHHHHHHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             101677777640100-4-6-----89999742224778999999764102222
Q gi|254780805|r  190 EISLGHARTLVSTSD-P-L-----SLAQVIVSKKMSVRDTEELVQEQDNKKEK  235 (300)
Q Consensus       190 ~is~ghar~Ll~~~~-~-~-----~la~~Ii~~~LSVRe~E~lVk~~~~~~~~  235 (300)
                      ..   +.+.+..... . .     .+...+....+|+++++++++........
T Consensus       172 ~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~v~~~v~~~~~~~~~  221 (242)
T 1vk1_A          172 XE---IELVYYGLKEDAKADMEKGEIDYVFIRXAPTKEEVMELVKRGEVFSPX  221 (242)
T ss_dssp             TS---SEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBSTT
T ss_pred             HH---HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf             77---788885586878887764358999986243799999999846767987