Query gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 300 No_of_seqs 186 out of 3259 Neff 6.5 Searched_HMMs 23785 Date Mon May 30 12:48:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780805.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vz0_A PARB, chromosome partit 100.0 0 0 368.8 11.4 215 5-235 3-219 (230) 2 1vk1_A Conserved hypothetical 100.0 6.3E-32 2.7E-36 223.7 -5.0 195 38-235 12-221 (242) 3 1r71_A Transcriptional repress 99.9 9.2E-26 3.9E-30 184.1 9.4 116 97-216 1-119 (178) 4 3mky_B Protein SOPB; partition 99.8 8.8E-22 3.7E-26 158.5 6.8 169 116-295 6-183 (189) 5 1yzs_A Sulfiredoxin; PARB doma 99.8 5E-21 2.1E-25 153.7 7.0 85 35-122 21-110 (121) 6 1zx4_A P1 PARB, plasmid partit 99.8 1.2E-20 5.1E-25 151.2 2.7 164 129-293 1-178 (192) 7 1xw3_A Sulfiredoxin; retroredu 99.8 3.9E-19 1.7E-23 141.5 5.8 93 36-131 11-110 (110) 8 2ict_A Antitoxin HIGA; helix-t 94.8 0.019 7.9E-07 34.4 3.4 34 141-174 10-43 (94) 9 2a6c_A Helix-turn-helix motif; 94.5 0.03 1.3E-06 33.1 3.9 36 139-174 18-53 (83) 10 1lmb_3 Protein (lambda repress 94.3 0.04 1.7E-06 32.3 4.0 33 142-174 20-52 (92) 11 2wiu_B HTH-type transcriptiona 94.1 0.047 2E-06 31.8 4.2 40 135-174 8-47 (88) 12 2o38_A Hypothetical protein; a 94.0 0.046 1.9E-06 31.9 3.9 36 139-174 40-75 (120) 13 2kpj_A SOS-response transcript 94.0 0.038 1.6E-06 32.4 3.5 39 141-179 11-49 (94) 14 2w48_A Sorbitol operon regulat 93.8 0.053 2.2E-06 31.4 4.0 24 151-174 20-43 (315) 15 3cec_A Putative antidote prote 93.7 0.03 1.3E-06 33.1 2.5 38 137-174 16-53 (104) 16 2fjr_A Repressor protein CI; g 93.6 0.043 1.8E-06 32.1 3.2 45 142-186 9-54 (189) 17 3o9x_A Uncharacterized HTH-typ 93.6 0.041 1.7E-06 32.2 3.1 34 141-174 73-106 (133) 18 1u78_A TC3 transposase, transp 93.6 0.07 3E-06 30.7 4.2 41 132-174 4-44 (141) 19 3b7h_A Prophage LP1 protein 11 93.3 0.054 2.3E-06 31.4 3.3 34 141-174 9-42 (78) 20 3eus_A DNA-binding protein; st 93.2 0.088 3.7E-06 30.1 4.2 42 133-174 6-49 (86) 21 1y7y_A C.AHDI; helix-turn-heli 93.2 0.073 3.1E-06 30.5 3.8 38 138-175 12-49 (74) 22 2b5a_A C.BCLI; helix-turn-heli 93.1 0.063 2.7E-06 31.0 3.4 37 140-176 11-47 (77) 23 3bdn_A Lambda repressor; repre 93.1 0.071 3E-06 30.6 3.7 36 139-174 13-52 (236) 24 3kz3_A Repressor protein CI; f 93.1 0.071 3E-06 30.7 3.6 36 144-179 17-52 (80) 25 3ivp_A Putative transposon-rel 93.0 0.085 3.6E-06 30.1 4.0 40 135-174 8-47 (126) 26 1b0n_A Protein (SINR protein); 93.0 0.068 2.9E-06 30.7 3.4 33 142-174 4-36 (111) 27 3bs3_A Putative DNA-binding pr 93.0 0.054 2.3E-06 31.4 2.9 31 144-174 15-45 (76) 28 2auw_A Hypothetical protein NE 92.9 0.069 2.9E-06 30.7 3.4 33 142-174 93-125 (170) 29 3fmy_A HTH-type transcriptiona 92.8 0.052 2.2E-06 31.5 2.7 33 142-174 14-46 (73) 30 1x57_A Endothelial differentia 92.7 0.071 3E-06 30.7 3.2 38 137-174 11-48 (91) 31 3op9_A PLI0006 protein; struct 92.7 0.078 3.3E-06 30.4 3.4 39 141-179 11-49 (114) 32 1utx_A CYLR2; DNA-binding prot 92.3 0.072 3E-06 30.6 2.8 31 144-174 6-36 (66) 33 3clc_A Regulatory protein; pro 92.3 0.11 4.7E-06 29.4 3.8 36 139-174 11-46 (82) 34 3f52_A CLP gene regulator (CLG 92.2 0.085 3.6E-06 30.1 3.1 35 140-174 29-63 (117) 35 2ppx_A AGR_C_3184P, uncharacte 92.2 0.047 2E-06 31.8 1.8 39 135-173 26-64 (99) 36 1jko_C HIN recombinase, DNA-in 92.1 0.059 2.5E-06 31.2 2.1 38 135-174 6-43 (52) 37 3f6w_A XRE-family like protein 91.9 0.12 5.2E-06 29.1 3.7 36 139-174 14-49 (83) 38 3omt_A Uncharacterized protein 91.9 0.078 3.3E-06 30.4 2.6 31 144-174 13-43 (73) 39 1adr_A P22 C2 repressor; trans 91.8 0.11 4.7E-06 29.4 3.3 34 141-174 7-40 (76) 40 2ef8_A C.ECOT38IS, putative tr 91.8 0.11 4.6E-06 29.4 3.3 36 139-174 10-45 (84) 41 1r69_A Repressor protein CI; g 91.7 0.12 5.2E-06 29.1 3.5 34 141-174 3-36 (69) 42 1zug_A Phage 434 CRO protein; 91.7 0.12 5.2E-06 29.1 3.5 34 141-174 5-38 (71) 43 2l49_A C protein; P2 bacteriop 91.6 0.09 3.8E-06 30.0 2.7 34 142-175 7-40 (99) 44 2ewt_A BLDD, putative DNA-bind 91.6 0.15 6.1E-06 28.6 3.7 36 139-174 8-45 (71) 45 3g5g_A Regulatory protein; tra 91.5 0.14 6.1E-06 28.7 3.7 36 139-174 28-63 (99) 46 3mlf_A Transcriptional regulat 91.4 0.11 4.4E-06 29.5 2.8 45 142-186 26-71 (111) 47 2eby_A Putative HTH-type trans 91.4 0.1 4.3E-06 29.7 2.7 54 130-186 4-59 (113) 48 2jvl_A TRMBF1; coactivator, he 91.4 0.16 6.6E-06 28.4 3.7 37 138-174 33-71 (107) 49 2bnm_A Epoxidase; oxidoreducta 91.0 0.17 7.3E-06 28.1 3.7 37 138-174 9-45 (198) 50 2wte_A CSA3; antiviral protein 90.9 0.79 3.3E-05 23.9 7.8 114 59-174 49-188 (244) 51 2p5t_A Putative transcriptiona 90.8 0.037 1.5E-06 32.5 0.0 34 142-175 4-37 (158) 52 1vk1_A Conserved hypothetical 90.7 0.02 8.4E-07 34.2 -1.4 85 120-204 107-207 (242) 53 3kxa_A NGO0477 protein, putati 90.6 0.13 5.3E-06 29.1 2.6 32 143-174 72-103 (141) 54 1y9q_A Transcriptional regulat 90.5 0.18 7.7E-06 28.0 3.4 38 137-174 9-46 (192) 55 2r1j_L Repressor protein C2; p 90.2 0.13 5.4E-06 29.0 2.4 34 141-174 7-40 (68) 56 2hwj_A AGR_C_2837P, hypothetic 89.5 0.15 6.5E-06 28.5 2.3 76 37-118 7-93 (205) 57 1sfx_A Conserved hypothetical 89.3 0.53 2.2E-05 25.0 4.9 49 125-174 8-56 (109) 58 1jhf_A LEXA repressor; LEXA SO 88.8 0.45 1.9E-05 25.5 4.3 42 135-176 4-50 (202) 59 1hlv_A CENP-B, major centromer 88.0 0.53 2.2E-05 25.0 4.2 44 131-174 4-47 (131) 60 2h8r_A Hepatocyte nuclear fact 87.6 0.87 3.6E-05 23.7 5.1 54 120-175 14-67 (221) 61 1dw9_A Cyanate lyase; cyanate 87.3 0.35 1.5E-05 26.2 3.0 39 148-186 22-61 (156) 62 1umq_A Photosynthetic apparatu 86.8 0.55 2.3E-05 24.9 3.7 37 137-174 40-76 (81) 63 2d5v_A Hepatocyte nuclear fact 86.3 0.67 2.8E-05 24.4 4.0 42 133-174 2-44 (164) 64 1rp3_A RNA polymerase sigma fa 85.8 1.4 5.9E-05 22.3 5.4 21 154-174 117-137 (239) 65 2r0q_C Putative transposon TN5 85.6 0.65 2.7E-05 24.5 3.6 23 152-174 175-197 (209) 66 2o0m_A Transcriptional regulat 85.2 0.14 5.8E-06 28.8 0.0 11 217-227 255-265 (345) 67 2d1h_A ST1889, 109AA long hypo 85.1 1 4.4E-05 23.1 4.5 41 133-174 17-58 (109) 68 2o8x_A Probable RNA polymerase 84.8 0.98 4.1E-05 23.3 4.2 40 133-174 14-53 (70) 69 1ojl_A Transcriptional regulat 84.7 0.67 2.8E-05 24.4 3.4 11 219-229 221-231 (304) 70 3hug_A RNA polymerase sigma fa 84.4 2 8.4E-05 21.3 5.9 38 135-174 38-75 (92) 71 2ofy_A Putative XRE-family tra 84.4 0.92 3.9E-05 23.5 3.9 23 152-174 27-49 (86) 72 3k2z_A LEXA repressor; winged 84.0 1.2 5.2E-05 22.7 4.4 39 135-173 3-45 (196) 73 1fse_A GERE; helix-turn-helix 83.9 1 4.4E-05 23.1 4.0 40 132-174 9-48 (74) 74 1ku9_A Hypothetical protein MJ 83.7 2 8.5E-05 21.3 5.4 49 126-175 15-64 (152) 75 2krf_A Transcriptional regulat 83.5 1.1 4.5E-05 23.1 3.9 42 130-174 8-49 (73) 76 3g7d_A PHPD; non heme Fe(II) d 83.4 1.8 7.5E-05 21.7 5.1 47 141-187 232-280 (443) 77 1ntc_A Protein (nitrogen regul 82.9 1 4.3E-05 23.2 3.6 41 136-177 49-89 (91) 78 1s7o_A Hypothetical UPF0122 pr 82.5 1.4 5.7E-05 22.4 4.2 38 135-174 23-60 (113) 79 1je8_A Nitrate/nitrite respons 82.0 1.4 5.9E-05 22.3 4.1 38 134-174 21-58 (82) 80 2wus_R RODZ, putative uncharac 82.0 0.95 4E-05 23.4 3.2 34 140-173 8-41 (112) 81 3c57_A Two component transcrip 81.8 1.3 5.6E-05 22.5 3.9 39 133-174 26-64 (95) 82 2wv0_A YVOA, HTH-type transcri 81.7 1.5 6.3E-05 22.1 4.1 49 129-177 2-59 (243) 83 3b73_A PHIH1 repressor-like pr 80.9 0.98 4.1E-05 23.3 3.0 41 135-176 11-53 (111) 84 3bpv_A Transcriptional regulat 80.4 2.8 0.00012 20.4 5.4 45 129-174 21-65 (138) 85 1l3l_A Transcriptional activat 80.3 2.8 0.00012 20.3 6.3 39 133-174 172-210 (234) 86 3cuo_A Uncharacterized HTH-typ 80.2 1.1 4.8E-05 22.9 3.1 34 144-177 30-63 (99) 87 3e7l_A Transcriptional regulat 80.2 1.5 6.4E-05 22.1 3.8 40 138-178 19-58 (63) 88 2zkz_A Transcriptional repress 79.7 1.3 5.4E-05 22.6 3.2 33 145-177 34-66 (99) 89 2q0o_A Probable transcriptiona 79.5 3 0.00013 20.2 6.4 39 133-174 174-212 (236) 90 1eto_A FIS, factor for inversi 79.3 1.6 6.7E-05 22.0 3.6 42 136-178 56-97 (98) 91 2cyy_A Putative HTH-type trans 79.1 1.9 8E-05 21.5 4.0 122 134-295 4-126 (151) 92 3bd1_A CRO protein; transcript 79.1 1.3 5.4E-05 22.6 3.1 39 135-180 1-39 (79) 93 1s3j_A YUSO protein; structura 78.9 3.1 0.00013 20.1 5.4 47 127-174 27-73 (155) 94 3jth_A Transcription activator 78.4 1.8 7.8E-05 21.6 3.7 29 149-177 33-61 (98) 95 2elh_A CG11849-PA, LD40883P; s 78.1 2.2 9.4E-05 21.0 4.1 54 129-187 17-70 (87) 96 3mzy_A RNA polymerase sigma-H 77.8 3.4 0.00014 19.9 5.5 34 151-186 123-156 (164) 97 1p4w_A RCSB; solution structur 77.8 2.2 9.1E-05 21.1 4.0 39 133-174 33-71 (99) 98 1u2w_A CADC repressor, cadmium 77.5 1.7 7E-05 21.8 3.3 32 146-177 50-81 (122) 99 1x2l_A CUT-like 2, homeobox pr 77.4 2.3 9.6E-05 20.9 4.0 42 133-174 15-57 (101) 100 1x3u_A Transcriptional regulat 77.4 2 8.3E-05 21.4 3.6 38 134-174 16-53 (79) 101 2ia0_A Putative HTH-type trans 77.1 2.5 0.0001 20.8 4.1 48 135-192 15-62 (171) 102 1mkm_A ICLR transcriptional re 77.0 2.7 0.00011 20.5 4.2 40 135-174 4-45 (249) 103 1jhg_A Trp operon repressor; c 77.0 3.6 0.00015 19.7 5.5 56 135-190 36-97 (101) 104 2rnj_A Response regulator prot 76.9 2.1 8.7E-05 21.2 3.6 38 134-174 29-66 (91) 105 3klo_A Transcriptional regulat 76.8 2.1 8.8E-05 21.2 3.7 38 134-174 159-196 (225) 106 1uxc_A FRUR (1-57), fructose r 76.5 1.7 7.1E-05 21.8 3.1 35 153-187 1-39 (65) 107 1g2h_A Transcriptional regulat 75.9 2 8.2E-05 21.4 3.3 41 135-177 18-58 (61) 108 2k27_A Paired box protein PAX- 75.7 2 8.2E-05 21.4 3.2 33 143-176 33-65 (159) 109 1gdt_A GD resolvase, protein ( 75.1 1.9 8E-05 21.5 3.0 22 152-173 158-179 (183) 110 2dbb_A Putative HTH-type trans 75.1 3.1 0.00013 20.1 4.2 49 134-192 6-54 (151) 111 2w25_A Probable transcriptiona 74.9 3.5 0.00015 19.8 4.4 49 134-192 4-52 (150) 112 3bj6_A Transcriptional regulat 74.8 4.1 0.00017 19.4 5.2 47 127-174 30-76 (152) 113 1wh6_A CUT-like 2, homeobox pr 74.3 3.1 0.00013 20.1 4.0 42 133-174 15-57 (101) 114 1r1u_A CZRA, repressor protein 73.9 3 0.00012 20.2 3.8 29 149-177 36-64 (106) 115 2bv6_A MGRA, HTH-type transcri 73.8 2.3 9.9E-05 20.9 3.2 42 132-174 32-73 (142) 116 1nr3_A MTH0916, DNA-binding pr 73.7 0.27 1.1E-05 27.0 -1.6 22 149-170 2-23 (122) 117 1k78_A Paired box protein PAX5 73.7 3.2 0.00013 20.0 3.9 32 144-176 41-72 (149) 118 2g7u_A Transcriptional regulat 73.5 3.7 0.00016 19.6 4.2 40 135-174 10-51 (257) 119 3c3w_A Two component transcrip 73.4 3.3 0.00014 19.9 3.9 39 133-174 148-186 (225) 120 1r1t_A Transcriptional repress 73.3 3.2 0.00013 20.0 3.8 28 150-177 57-84 (122) 121 1wh8_A CUT-like 2, homeobox pr 73.1 3.4 0.00014 19.9 3.9 42 133-174 25-67 (111) 122 2e1c_A Putative HTH-type trans 73.0 4.2 0.00018 19.3 4.4 121 134-295 24-146 (171) 123 3i4p_A Transcriptional regulat 72.8 2.6 0.00011 20.6 3.3 40 144-192 9-48 (162) 124 2pex_A Transcriptional regulat 72.3 4.7 0.0002 19.0 5.1 43 131-174 41-83 (153) 125 1j5y_A Transcriptional regulat 71.9 4.3 0.00018 19.2 4.3 39 139-177 21-61 (187) 126 2eth_A Transcriptional regulat 71.6 3.3 0.00014 19.9 3.6 41 133-174 40-80 (154) 127 2jsc_A Transcriptional regulat 71.5 2.7 0.00011 20.5 3.1 33 144-177 27-59 (118) 128 2jrh_A Mitogen-activated prote 71.4 4.5 0.00019 19.1 4.2 49 246-296 22-70 (94) 129 2oqg_A Possible transcriptiona 71.3 3 0.00013 20.2 3.3 28 150-177 32-59 (114) 130 1jgs_A Multiple antibiotic res 70.8 5 0.00021 18.8 4.5 41 133-174 30-70 (138) 131 3kcc_A Catabolite gene activat 70.8 4 0.00017 19.4 3.9 21 153-173 218-238 (260) 132 2pn6_A ST1022, 150AA long hypo 70.8 3.1 0.00013 20.1 3.3 29 146-174 11-39 (150) 133 1or7_A Sigma-24, RNA polymeras 70.8 3.7 0.00016 19.6 3.7 39 134-174 140-178 (194) 134 2nyx_A Probable transcriptiona 70.6 5.1 0.00021 18.7 4.4 42 134-176 42-83 (168) 135 2pij_A Prophage PFL 6 CRO; tra 70.3 2.9 0.00012 20.3 3.0 28 146-174 8-35 (67) 136 2kko_A Possible transcriptiona 70.2 3.9 0.00017 19.4 3.7 28 150-177 36-63 (108) 137 3nrv_A Putative transcriptiona 69.8 5.3 0.00022 18.6 6.0 41 133-174 36-76 (148) 138 3h5t_A Transcriptional regulat 69.7 3.5 0.00015 19.8 3.4 12 140-151 224-235 (366) 139 2cu1_A Mitogen-activated prote 69.7 4.9 0.00021 18.8 4.1 48 246-295 26-73 (103) 140 2jpc_A SSRB; DNA binding prote 69.7 3.2 0.00013 20.0 3.2 28 146-174 8-35 (61) 141 3f6v_A Possible transcriptiona 69.6 2.3 9.8E-05 20.9 2.5 31 147-177 66-96 (151) 142 2a61_A Transcriptional regulat 69.0 5.5 0.00023 18.5 4.4 40 134-174 30-69 (145) 143 2p5v_A Transcriptional regulat 69.0 3.6 0.00015 19.7 3.3 48 135-192 8-55 (162) 144 3edp_A LIN2111 protein; APC883 68.9 5 0.00021 18.8 4.0 18 155-172 36-53 (236) 145 3eet_A Putative GNTR-family tr 68.8 5.6 0.00023 18.5 4.4 23 154-176 55-77 (272) 146 2c60_A Human mitogen-activated 68.5 4.5 0.00019 19.1 3.7 49 246-296 49-97 (111) 147 2ia2_A Putative transcriptiona 68.4 5 0.00021 18.7 4.0 38 136-173 18-57 (265) 148 3iwf_A Transcription regulator 68.2 5.4 0.00023 18.5 4.1 55 133-187 13-72 (107) 149 1on2_A Transcriptional regulat 68.2 5.7 0.00024 18.4 4.7 33 143-175 12-45 (142) 150 1tty_A Sigma-A, RNA polymerase 68.1 3.3 0.00014 19.9 3.0 40 133-172 17-58 (87) 151 3m6z_A Topoisomerase V; helix- 68.1 5.7 0.00024 18.4 4.6 94 75-169 76-214 (380) 152 1z91_A Organic hydroperoxide r 68.1 5.7 0.00024 18.4 4.2 44 130-174 33-76 (147) 153 3frw_A Putative Trp repressor 67.4 5.8 0.00025 18.3 4.1 31 146-177 53-83 (107) 154 3by6_A Predicted transcription 67.4 5.9 0.00025 18.3 4.3 24 154-177 37-60 (126) 155 2hsg_A Glucose-resistance amyl 67.1 2.3 9.5E-05 21.0 2.0 18 58-75 74-91 (332) 156 2npt_B Mitogen-activated prote 66.9 6 0.00025 18.2 4.7 48 246-295 38-85 (100) 157 2rdp_A Putative transcriptiona 66.7 6.1 0.00026 18.2 4.4 41 133-174 38-78 (150) 158 3cta_A Riboflavin kinase; stru 66.6 6.1 0.00026 18.2 4.2 26 151-176 26-51 (230) 159 3kor_A Possible Trp repressor; 66.6 6.1 0.00026 18.2 4.1 33 146-179 70-102 (119) 160 1ub9_A Hypothetical protein PH 66.5 5.3 0.00022 18.6 3.8 40 136-176 15-54 (100) 161 3bwg_A Uncharacterized HTH-typ 66.4 5.9 0.00025 18.3 4.0 24 154-177 31-54 (239) 162 1uly_A Hypothetical protein PH 65.9 5.7 0.00024 18.4 3.8 28 149-176 30-57 (192) 163 1i1g_A Transcriptional regulat 65.8 4 0.00017 19.4 3.0 110 147-296 13-125 (141) 164 3f6o_A Probable transcriptiona 65.5 2.8 0.00012 20.4 2.2 29 149-177 28-56 (118) 165 2p4w_A Transcriptional regulat 65.5 6.4 0.00027 18.1 4.3 20 59-78 41-60 (202) 166 2p7v_B Sigma-70, RNA polymeras 65.4 6.1 0.00026 18.2 3.9 40 134-173 5-46 (68) 167 2qww_A Transcriptional regulat 65.3 6.5 0.00027 18.0 5.1 44 130-174 34-77 (154) 168 3ech_A MEXR, multidrug resista 64.8 6.6 0.00028 18.0 5.3 42 132-174 32-73 (142) 169 2hr3_A Probable transcriptiona 64.7 6.7 0.00028 18.0 4.0 41 133-174 31-72 (147) 170 2cfx_A HTH-type transcriptiona 64.6 5 0.00021 18.8 3.3 38 146-192 13-50 (144) 171 3kjx_A Transcriptional regulat 64.4 2.3 9.7E-05 20.9 1.6 14 139-152 203-216 (344) 172 3hsr_A HTH-type transcriptiona 64.4 6.7 0.00028 17.9 4.0 41 133-174 32-72 (140) 173 3bja_A Transcriptional regulat 64.3 5 0.00021 18.8 3.3 44 130-174 26-69 (139) 174 3e6c_C CPRK, cyclic nucleotide 63.7 6.4 0.00027 18.1 3.7 33 153-194 178-210 (250) 175 3k0l_A Repressor protein; heli 63.6 7 0.00029 17.8 4.1 42 132-174 41-82 (162) 176 2csb_A Topoisomerase V, TOP61; 63.6 7 0.00029 17.8 4.5 12 155-166 200-211 (519) 177 2cg4_A Regulatory protein ASNC 63.4 4.7 0.0002 18.9 3.0 123 135-296 6-130 (152) 178 2vn2_A DNAD, chromosome replic 63.3 7.1 0.0003 17.8 4.1 66 96-174 4-73 (128) 179 2ek5_A Predicted transcription 63.3 7.1 0.0003 17.8 4.0 24 154-177 30-53 (129) 180 3fym_A Putative uncharacterize 63.3 5.1 0.00021 18.7 3.2 32 141-172 5-36 (130) 181 2o0y_A Transcriptional regulat 63.2 6.2 0.00026 18.2 3.6 31 58-93 50-80 (260) 182 3la7_A Global nitrogen regulat 63.0 6.6 0.00028 18.0 3.7 22 153-174 194-215 (243) 183 1y0u_A Arsenical resistance op 63.0 6.6 0.00028 18.0 3.7 30 147-177 39-68 (96) 184 1ft9_A Carbon monoxide oxidati 62.9 3.8 0.00016 19.6 2.5 23 152-174 163-185 (222) 185 2jn6_A Protein CGL2762, transp 62.8 7.2 0.0003 17.7 4.6 40 137-176 8-47 (97) 186 2v79_A DNA replication protein 62.8 6.1 0.00026 18.2 3.5 74 97-192 5-82 (135) 187 1xsv_A Hypothetical UPF0122 pr 62.7 7.2 0.0003 17.7 10.6 38 135-174 26-63 (113) 188 1rzs_A Antirepressor, regulato 62.6 3.6 0.00015 19.7 2.3 25 147-172 6-30 (61) 189 2iu5_A DHAS, hypothetical prot 62.4 5.5 0.00023 18.5 3.2 33 141-173 19-54 (195) 190 1pdn_C Protein (PRD paired); p 62.4 7.3 0.00031 17.7 3.9 32 144-176 26-57 (128) 191 3iwz_A CAP-like, catabolite ac 62.2 4.2 0.00018 19.3 2.6 43 55-97 19-64 (230) 192 3clo_A Transcriptional regulat 62.2 7.4 0.00031 17.7 4.3 41 131-174 194-234 (258) 193 3bil_A Probable LACI-family tr 61.6 1.4 5.7E-05 22.4 0.0 17 59-75 81-97 (348) 194 3g3z_A NMB1585, transcriptiona 60.4 7.9 0.00033 17.5 4.4 43 131-174 25-67 (145) 195 3e6m_A MARR family transcripti 60.3 8 0.00034 17.5 5.0 43 131-174 47-89 (161) 196 2x4h_A Hypothetical protein SS 60.2 8 0.00034 17.5 4.6 81 132-226 8-92 (139) 197 3bdd_A Regulatory protein MARR 59.4 8.3 0.00035 17.4 4.4 86 134-229 28-130 (142) 198 2zdb_A Transcriptional regulat 59.3 3.7 0.00015 19.6 1.9 36 152-196 139-174 (195) 199 3h5o_A Transcriptional regulat 59.1 1.6 6.7E-05 21.9 0.0 27 47-76 68-94 (339) 200 1l0o_C Sigma factor; bergerat 59.1 1.6 6.7E-05 21.9 0.0 35 152-186 130-164 (243) 201 3fx3_A Cyclic nucleotide-bindi 58.8 4.6 0.00019 19.0 2.3 14 57-70 21-34 (237) 202 3neu_A LIN1836 protein; struct 58.8 8.5 0.00036 17.3 4.3 24 154-177 39-62 (125) 203 3e97_A Transcriptional regulat 58.7 5.2 0.00022 18.7 2.6 53 44-98 5-60 (231) 204 2o3f_A Putative HTH-type trans 58.4 8.6 0.00036 17.3 3.6 55 132-186 16-75 (111) 205 3oop_A LIN2960 protein; protei 57.9 8.7 0.00037 17.2 4.8 44 130-174 30-73 (143) 206 3nqo_A MARR-family transcripti 57.4 8.9 0.00037 17.2 4.5 40 134-174 38-79 (189) 207 2h09_A Transcriptional regulat 57.3 9 0.00038 17.1 4.5 71 143-226 44-116 (155) 208 2kfs_A Conserved hypothetical 57.2 4.9 0.00021 18.8 2.2 23 152-174 31-53 (148) 209 2fmy_A COOA, carbon monoxide o 56.9 5.3 0.00022 18.6 2.4 21 153-173 168-188 (220) 210 2gxg_A 146AA long hypothetical 56.8 9.1 0.00038 17.1 5.0 45 128-174 28-72 (146) 211 3dv8_A Transcriptional regulat 56.7 9.2 0.00039 17.1 3.7 42 55-97 11-56 (220) 212 1zs4_A Regulatory protein CII; 56.4 8.8 0.00037 17.2 3.4 28 142-172 17-44 (83) 213 2csf_A DNA-binding protein SAT 56.0 9.4 0.0004 17.0 4.9 43 137-179 19-62 (101) 214 3kp7_A Transcriptional regulat 55.2 9.6 0.0004 17.0 3.4 42 133-176 34-75 (151) 215 2oz6_A Virulence factor regula 55.1 6.6 0.00028 18.0 2.6 22 153-174 165-186 (207) 216 1v4r_A Transcriptional repress 54.8 6.9 0.00029 17.9 2.7 39 139-177 15-60 (102) 217 3cjn_A Transcriptional regulat 53.8 10 0.00043 16.8 4.3 42 132-174 47-88 (162) 218 2gau_A Transcriptional regulat 53.8 6.5 0.00027 18.0 2.4 21 153-173 181-201 (232) 219 3hef_A Gene 1 protein; bacteri 53.5 10 0.00043 16.8 4.7 113 144-284 24-138 (143) 220 2ovg_A Phage lambda CRO; trans 53.1 8.4 0.00035 17.3 2.9 28 145-174 8-35 (66) 221 2ay1_A Aroat, aromatic amino a 52.8 10 0.00044 16.7 3.3 36 255-295 356-391 (394) 222 2d2r_A Undecaprenyl pyrophosph 52.3 1.4 6.1E-05 22.2 -1.1 93 90-190 21-126 (245) 223 3e3m_A Transcriptional regulat 52.2 2.4 0.0001 20.8 0.0 27 47-76 76-102 (355) 224 1hw1_A FADR, fatty acid metabo 52.0 11 0.00046 16.6 4.0 34 44-77 17-62 (239) 225 1tlh_B Sigma-70, RNA polymeras 51.3 11 0.00047 16.5 4.1 40 133-172 17-58 (81) 226 2o7t_A Transcriptional regulat 51.1 11 0.00046 16.6 3.2 30 144-173 17-49 (199) 227 2fbi_A Probable transcriptiona 51.0 11 0.00047 16.5 4.6 44 130-174 29-72 (142) 228 3dkw_A DNR protein; CRP-FNR, H 50.8 7.5 0.00032 17.6 2.3 44 54-97 16-62 (227) 229 3dbi_A Sugar-binding transcrip 50.6 2.7 0.00011 20.5 0.0 17 60-76 79-95 (338) 230 1zyb_A Transcription regulator 50.4 8.9 0.00037 17.2 2.6 21 153-173 187-207 (232) 231 3bro_A Transcriptional regulat 50.3 12 0.00049 16.4 4.4 44 130-174 27-72 (141) 232 1z4h_A TORI, TOR inhibition pr 50.0 3.6 0.00015 19.7 0.6 30 153-182 11-40 (66) 233 3ctp_A Periplasmic binding pro 50.0 2.8 0.00012 20.4 0.0 17 59-75 75-91 (330) 234 1ku3_A Sigma factor SIGA; heli 49.8 12 0.0005 16.4 4.0 41 133-173 9-51 (73) 235 2fbh_A Transcriptional regulat 49.8 12 0.0005 16.4 5.4 42 132-174 32-74 (146) 236 2zcw_A TTHA1359, transcription 49.4 9.2 0.00038 17.1 2.6 23 152-174 146-168 (202) 237 1jye_A Lactose operon represso 49.2 2.9 0.00012 20.3 0.0 17 59-75 76-92 (349) 238 3o60_A LIN0861 protein; PSI, M 48.7 12 0.00051 16.3 3.2 34 141-174 25-62 (185) 239 3jvd_A Transcriptional regulat 48.7 3 0.00013 20.2 0.0 16 60-75 80-95 (333) 240 2q1z_A RPOE, ECF SIGE; ECF sig 48.6 2.9 0.00012 20.3 -0.0 38 135-174 136-173 (184) 241 1zk8_A Transcriptional regulat 48.4 12 0.00052 16.2 3.4 19 154-172 30-48 (183) 242 3c7j_A Transcriptional regulat 48.4 12 0.00052 16.2 5.0 68 2-76 1-79 (237) 243 1wiz_A DNA-binding protein SAT 48.2 12 0.00052 16.2 3.1 66 137-205 19-85 (101) 244 3ihu_A Transcriptional regulat 47.7 9.9 0.00042 16.9 2.5 21 44-64 26-46 (222) 245 3f8m_A GNTR-family protein tra 47.5 9.1 0.00038 17.1 2.3 23 154-176 38-60 (248) 246 2q7w_A Aspartate aminotransfer 47.5 13 0.00054 16.2 3.3 37 253-294 357-393 (396) 247 1u8b_A ADA polyprotein; protei 47.4 13 0.00054 16.1 3.6 38 143-180 84-122 (133) 248 3boq_A Transcriptional regulat 47.4 9.5 0.0004 17.0 2.4 42 133-175 43-85 (160) 249 3d0s_A Transcriptional regulat 46.9 11 0.00045 16.6 2.6 21 153-173 178-198 (227) 250 3eco_A MEPR; mutlidrug efflux 46.5 13 0.00056 16.1 5.7 44 130-174 24-69 (139) 251 2vg3_A Undecaprenyl pyrophosph 46.4 2.6 0.00011 20.6 -0.6 93 90-190 61-166 (284) 252 2di3_A Bacterial regulatory pr 46.4 11 0.00045 16.7 2.5 19 59-77 41-59 (239) 253 2o20_A Catabolite control prot 46.3 3.4 0.00014 19.8 0.0 17 60-76 79-95 (332) 254 3gpv_A Transcriptional regulat 45.7 7.3 0.00031 17.7 1.6 24 152-175 16-39 (148) 255 1iuf_A Centromere ABP1 protein 45.6 9 0.00038 17.1 2.1 45 130-174 7-58 (144) 256 3gzi_A Transcriptional regulat 45.2 14 0.00058 15.9 3.0 29 145-173 27-58 (218) 257 2gqq_A Leucine-responsive regu 44.2 2.8 0.00012 20.4 -0.7 41 133-174 9-49 (163) 258 3ni7_A Bacterial regulatory pr 44.1 14 0.0006 15.8 3.0 29 145-173 17-48 (213) 259 1a04_A Nitrate/nitrite respons 44.0 14 0.00061 15.8 4.0 38 134-174 154-191 (215) 260 3fm5_A Transcriptional regulat 43.9 14 0.00061 15.8 4.6 41 133-174 35-76 (150) 261 3dn7_A Cyclic nucleotide bindi 43.9 3.9 0.00017 19.4 0.0 41 56-97 16-60 (194) 262 3fsl_A Aromatic-amino-acid ami 43.7 15 0.00061 15.8 3.6 36 254-294 359-394 (397) 263 2ao9_A Phage protein; structur 43.7 15 0.00061 15.8 6.8 72 152-229 48-119 (155) 264 3crj_A Transcription regulator 43.4 14 0.00058 15.9 2.7 19 154-172 36-54 (199) 265 2hs5_A Putative transcriptiona 43.1 13 0.00055 16.1 2.5 19 45-63 39-57 (239) 266 3kax_A Aminotransferase, class 42.6 15 0.00063 15.7 2.8 45 251-295 332-380 (383) 267 3fdb_A Beta C-S lyase, putativ 42.6 15 0.00064 15.7 3.0 25 271-295 346-371 (377) 268 1lj9_A Transcriptional regulat 42.5 15 0.00064 15.7 3.9 42 132-174 24-65 (144) 269 2qwt_A Transcriptional regulat 42.4 15 0.00064 15.7 3.0 21 153-173 33-53 (196) 270 3mn2_A Probable ARAC family tr 42.3 15 0.00065 15.6 4.1 46 152-201 18-64 (108) 271 3cdh_A Transcriptional regulat 42.2 15 0.00065 15.6 5.2 49 133-191 39-87 (155) 272 2vke_A Tetracycline repressor 42.2 15 0.00065 15.6 3.9 17 155-171 26-42 (207) 273 3hrs_A Metalloregulator SCAR; 42.0 16 0.00065 15.6 4.7 31 144-174 11-42 (214) 274 3deu_A Transcriptional regulat 41.7 16 0.00066 15.6 4.3 41 133-174 49-90 (166) 275 2jj7_A Hemolysin II regulatory 41.7 15 0.00064 15.7 2.7 30 145-174 17-49 (186) 276 2qlz_A Transcription factor PF 40.9 5.4 0.00023 18.6 0.3 22 58-79 37-58 (232) 277 7aat_A Aspartate aminotransfer 40.6 16 0.00068 15.5 3.5 36 254-294 362-397 (401) 278 2q24_A Putative TETR family tr 40.6 16 0.00068 15.5 2.8 12 64-75 22-33 (194) 279 1b4a_A Arginine repressor; hel 40.6 16 0.00068 15.5 3.8 41 139-179 5-51 (149) 280 2zc0_A Alanine glyoxylate tran 40.5 16 0.00069 15.5 3.4 46 250-295 347-399 (407) 281 1aoy_A Arginine repressor; DNA 40.4 16 0.00069 15.5 3.8 37 142-178 12-55 (78) 282 2d6y_A Putative TETR family re 40.1 17 0.0007 15.4 3.0 21 153-173 29-49 (202) 283 2pz9_A Putative regulatory pro 39.9 17 0.0007 15.4 3.3 19 154-172 52-70 (226) 284 2rek_A Putative TETR-family tr 39.9 17 0.0007 15.4 3.1 10 66-75 25-34 (199) 285 1ic8_A Hepatocyte nuclear fact 39.7 17 0.00071 15.4 4.0 42 135-176 26-67 (194) 286 2id3_A Putative transcriptiona 39.6 17 0.00071 15.4 3.1 21 153-173 61-81 (225) 287 1yaa_A Aspartate aminotransfer 39.6 17 0.00071 15.4 3.5 35 255-294 371-405 (412) 288 3f3x_A Transcriptional regulat 39.5 17 0.00071 15.4 4.1 39 134-174 34-72 (144) 289 1rr7_A Middle operon regulator 39.4 17 0.00071 15.4 4.1 23 152-174 92-114 (129) 290 3b81_A Transcriptional regulat 39.2 17 0.00072 15.3 2.7 28 146-173 22-52 (203) 291 3mvp_A TETR/ACRR transcription 39.0 17 0.00072 15.3 3.1 21 153-173 47-67 (217) 292 1d2f_A MALY protein; aminotran 38.7 17 0.00073 15.3 2.6 44 251-294 336-383 (390) 293 1o5l_A Transcriptional regulat 38.7 5.3 0.00022 18.6 0.0 21 153-173 165-185 (213) 294 3dbw_A Transcriptional regulat 38.6 17 0.00071 15.4 2.6 20 44-63 30-49 (226) 295 2o4a_A DNA-binding protein SAT 38.5 18 0.00074 15.3 3.1 38 137-174 9-47 (93) 296 3dew_A Transcriptional regulat 38.4 18 0.00074 15.3 3.1 20 154-173 30-49 (206) 297 3kkc_A TETR family transcripti 37.9 17 0.00071 15.4 2.5 33 142-174 19-54 (177) 298 2fa5_A Transcriptional regulat 37.5 18 0.00076 15.2 5.7 40 134-174 46-85 (162) 299 1neq_A DNA-binding protein NER 37.5 18 0.00076 15.2 3.1 42 129-174 3-44 (74) 300 1c7n_A Cystalysin; transferase 37.5 18 0.00076 15.2 3.0 50 249-298 338-398 (399) 301 3hhg_A Transcriptional regulat 37.3 18 0.00077 15.2 3.9 15 247-261 279-293 (306) 302 3ezs_A Aminotransferase ASPB; 37.2 18 0.00077 15.1 3.3 44 252-295 321-370 (376) 303 3frq_A Repressor protein MPHR( 37.0 18 0.00078 15.1 2.7 29 145-173 18-49 (195) 304 2dg8_A Putative TETR-family tr 37.0 18 0.00078 15.1 2.9 20 154-173 31-50 (193) 305 3ic7_A Putative transcriptiona 37.0 7 0.0003 17.8 0.4 24 154-177 37-60 (126) 306 2fq4_A Transcriptional regulat 36.7 19 0.00079 15.1 3.0 21 153-173 33-53 (192) 307 3dzz_A Putative pyridoxal 5'-p 36.6 19 0.00079 15.1 3.0 46 249-294 334-383 (391) 308 1t56_A EThr repressor; helix-t 36.6 19 0.00079 15.1 3.2 20 154-173 46-65 (216) 309 2k9l_A RNA polymerase sigma fa 36.6 19 0.00079 15.1 4.3 53 124-177 16-73 (76) 310 1yse_A DNA-binding protein SAT 36.5 19 0.00079 15.1 3.1 66 137-205 23-89 (141) 311 1bl0_A Protein (multiple antib 36.4 19 0.00079 15.1 3.3 37 152-190 27-64 (129) 312 1ui5_A A-factor receptor homol 36.0 19 0.00081 15.0 3.8 21 153-173 30-50 (215) 313 3dpj_A Transcription regulator 36.0 19 0.00081 15.0 3.0 22 152-173 28-49 (194) 314 3egq_A TETR family transcripti 35.8 19 0.00081 15.0 3.3 31 143-173 12-45 (170) 315 2bgc_A PRFA; bacterial infecti 35.6 18 0.00077 15.2 2.4 20 153-172 170-190 (238) 316 3if2_A Aminotransferase; YP_26 35.6 19 0.00082 15.0 3.3 43 250-293 379-433 (444) 317 1o4s_A Aspartate aminotransfer 35.5 20 0.00082 15.0 3.1 42 252-294 339-383 (389) 318 2wui_A MEXZ, transcriptional r 35.4 20 0.00082 15.0 3.2 20 154-173 33-52 (210) 319 3kz9_A SMCR; transcriptional r 35.4 20 0.00082 15.0 3.2 22 152-173 37-58 (206) 320 3f1b_A TETR-like transcription 35.2 20 0.00083 14.9 2.8 21 153-173 35-55 (203) 321 2nx4_A Transcriptional regulat 35.2 20 0.00083 14.9 3.0 22 152-173 30-51 (194) 322 2k9m_A RNA polymerase sigma fa 34.8 20 0.00084 14.9 3.4 47 134-180 16-68 (130) 323 3col_A Putative transcription 34.8 20 0.00084 14.9 2.8 29 145-173 20-51 (196) 324 2x48_A CAG38821; archeal virus 34.8 20 0.00084 14.9 3.8 26 147-173 27-52 (55) 325 3hta_A EBRA repressor; TETR fa 34.7 20 0.00084 14.9 3.1 12 63-74 34-45 (217) 326 1tc3_C Protein (TC3 transposas 34.6 20 0.00084 14.9 2.4 38 135-174 6-43 (51) 327 1j9i_A GPNU1 DBD;, terminase s 34.5 13 0.00055 16.1 1.5 27 152-179 2-28 (68) 328 2hyt_A TETR-family transcripti 34.4 20 0.00086 14.9 2.5 22 152-173 32-53 (197) 329 1gd9_A Aspartate aminotransfer 34.3 20 0.00086 14.8 3.3 44 251-294 333-380 (389) 330 2frh_A SARA, staphylococcal ac 34.2 20 0.00086 14.8 4.1 43 133-176 33-77 (127) 331 1xi9_A Putative transaminase; 34.1 21 0.00086 14.8 3.2 43 252-294 351-397 (406) 332 3ei9_A LL-diaminopimelate amin 34.0 21 0.00087 14.8 3.1 24 271-294 398-422 (432) 333 3ccy_A Putative TETR-family tr 33.8 17 0.00073 15.3 2.0 19 154-172 36-54 (203) 334 2eh3_A Transcriptional regulat 33.5 21 0.00088 14.8 3.0 20 154-173 24-43 (179) 335 2fxa_A Protease production reg 33.2 21 0.00089 14.7 5.5 41 133-174 44-84 (207) 336 3bqz_B HTH-type transcriptiona 33.0 21 0.0009 14.7 2.8 23 152-174 22-44 (194) 337 1ajs_A Aspartate aminotransfer 33.0 21 0.0009 14.7 3.3 21 274-294 385-405 (412) 338 3g7q_A Valine-pyruvate aminotr 32.8 22 0.00091 14.7 3.3 24 272-295 384-408 (417) 339 2x5d_A Probable aminotransfera 32.7 22 0.00091 14.7 3.1 43 252-294 346-392 (412) 340 2rae_A Transcriptional regulat 32.7 22 0.00091 14.7 2.8 13 63-75 23-35 (207) 341 2vg0_A Short-chain Z-isoprenyl 32.7 14 0.00057 16.0 1.3 17 174-190 96-112 (227) 342 2qq9_A Diphtheria toxin repres 32.4 22 0.00092 14.6 5.0 32 143-174 14-46 (226) 343 3lhq_A Acrab operon repressor 32.3 22 0.00092 14.6 3.0 21 153-173 35-55 (220) 344 3g7r_A Putative transcriptiona 32.1 22 0.00093 14.6 3.0 22 152-173 55-76 (221) 345 1f75_A Undecaprenyl pyrophosph 31.9 1.7 7.3E-05 21.7 -3.4 17 174-190 115-131 (249) 346 2zcm_A Biofilm operon icaabcd 31.8 22 0.00094 14.6 2.8 21 153-173 28-48 (192) 347 3fvs_A Kynurenine--oxoglutarat 31.8 22 0.00094 14.6 3.1 25 272-296 393-418 (422) 348 3c2b_A Transcriptional regulat 31.8 22 0.00094 14.6 3.1 12 63-74 21-32 (221) 349 1pb6_A Hypothetical transcript 31.8 22 0.00094 14.6 2.8 21 153-173 39-59 (212) 350 3jw4_A Transcriptional regulat 31.6 23 0.00095 14.6 7.3 44 130-174 34-79 (148) 351 2zcx_A SCO7815, TETR-family tr 31.5 23 0.00095 14.6 3.0 19 154-172 45-63 (231) 352 3cwr_A Transcriptional regulat 31.3 23 0.00096 14.5 3.1 18 154-171 39-56 (208) 353 1rkt_A Protein YFIR; transcrip 31.3 23 0.00096 14.5 2.8 21 153-173 33-53 (205) 354 2dou_A Probable N-succinyldiam 31.1 23 0.00097 14.5 3.5 43 250-295 325-373 (376) 355 2gen_A Probable transcriptiona 30.9 23 0.00097 14.5 2.8 21 153-173 28-48 (197) 356 3cjd_A Transcriptional regulat 30.8 23 0.00098 14.5 3.1 28 146-173 23-53 (198) 357 2nnn_A Probable transcriptiona 30.7 23 0.00098 14.5 9.5 42 132-174 33-74 (140) 358 2xdn_A HTH-type transcriptiona 30.7 23 0.00098 14.5 2.5 21 153-173 32-52 (210) 359 3bni_A Putative TETR-family tr 30.6 23 0.00098 14.5 3.0 21 153-173 64-84 (229) 360 3f0c_A TETR-molecule A, transc 30.3 24 0.001 14.4 3.0 20 154-173 33-52 (216) 361 3g0t_A Putative aminotransfera 30.1 24 0.001 14.4 3.3 44 250-295 383-432 (437) 362 3he0_A Transcriptional regulat 30.1 24 0.001 14.4 2.8 21 153-173 32-52 (196) 363 3pas_A TETR family transcripti 29.8 24 0.001 14.4 2.7 29 145-173 18-49 (195) 364 2hyj_A Putative TETR-family tr 29.7 24 0.001 14.4 2.8 19 154-172 34-52 (200) 365 2id6_A Transcriptional regulat 29.5 24 0.001 14.3 2.5 22 152-173 25-46 (202) 366 3geu_A Intercellular adhesion 29.3 22 0.00091 14.7 1.9 21 153-173 24-44 (189) 367 3h7h_A Transcription elongatio 29.2 18 0.00077 15.1 1.5 28 164-191 69-109 (120) 368 2zb9_A Putative transcriptiona 29.2 25 0.001 14.3 2.9 12 64-75 30-41 (214) 369 3lap_A Arginine repressor; arg 29.0 25 0.001 14.3 4.5 40 139-178 20-65 (170) 370 1uta_A FTSN, MSGA, cell divisi 29.0 25 0.001 14.3 4.8 48 250-298 23-71 (81) 371 3g1l_A Transcriptional regulat 29.0 25 0.001 14.3 3.3 12 63-74 50-61 (256) 372 2g7s_A Transcriptional regulat 28.9 25 0.0011 14.3 3.4 29 145-173 18-49 (194) 373 2i10_A Putative TETR transcrip 28.7 25 0.0011 14.3 3.0 22 153-174 32-53 (202) 374 3k7y_A Aspartate aminotransfer 28.6 25 0.0011 14.2 3.4 21 274-294 379-399 (405) 375 3hyi_A Protein DUF199/WHIA; la 28.6 25 0.0011 14.2 4.1 15 62-76 28-42 (295) 376 1yio_A Response regulatory pro 28.5 25 0.0011 14.2 3.8 95 65-174 65-179 (208) 377 2fd5_A Transcriptional regulat 28.4 26 0.0011 14.2 2.2 19 154-172 29-47 (180) 378 3bjb_A Probable transcriptiona 28.3 26 0.0011 14.2 3.2 22 153-174 43-64 (207) 379 2guh_A Putative TETR-family tr 28.3 26 0.0011 14.2 3.2 20 154-173 61-80 (214) 380 3meb_A Aspartate aminotransfer 27.9 26 0.0011 14.2 3.3 38 254-295 402-439 (448) 381 3cdl_A Transcriptional regulat 27.6 26 0.0011 14.1 2.5 21 153-173 30-50 (203) 382 1x60_A Sporulation-specific N- 27.5 26 0.0011 14.1 6.1 49 250-299 23-72 (79) 383 1b5p_A Protein (aspartate amin 27.5 27 0.0011 14.1 3.3 43 250-295 334-380 (385) 384 2hxi_A Putative transcriptiona 27.4 27 0.0011 14.1 3.8 26 49-74 20-46 (241) 385 2dg7_A Putative transcriptiona 27.4 27 0.0011 14.1 3.0 12 63-74 13-24 (195) 386 2k9s_A Arabinose operon regula 27.4 27 0.0011 14.1 2.1 29 152-180 20-49 (107) 387 3on4_A Transcriptional regulat 27.3 27 0.0011 14.1 3.1 20 153-172 31-50 (191) 388 2qco_A CMER; transcriptional r 27.1 16 0.00068 15.5 0.9 18 154-171 35-52 (210) 389 3jtx_A Aminotransferase; NP_28 27.0 27 0.0011 14.1 3.1 44 251-294 339-392 (396) 390 3hh0_A Transcriptional regulat 27.0 25 0.0011 14.3 1.9 14 156-169 8-21 (146) 391 3nr7_A DNA-binding protein H-N 26.8 27 0.0011 14.0 2.5 67 90-163 9-83 (86) 392 1t33_A Putative transcriptiona 26.8 27 0.0011 14.0 3.2 20 154-173 33-52 (224) 393 2fbk_A Transcriptional regulat 26.6 27 0.0012 14.0 3.7 42 132-174 64-108 (181) 394 3npi_A TETR family regulatory 26.4 28 0.0012 14.0 2.5 17 59-75 19-36 (251) 395 1bia_A BIRA bifunctional prote 26.3 28 0.0012 14.0 4.1 22 251-272 262-283 (321) 396 3bru_A Regulatory protein, TET 26.1 28 0.0012 14.0 3.1 22 53-74 25-47 (222) 397 1fx7_A Iron-dependent represso 26.0 28 0.0012 14.0 4.9 34 143-176 14-48 (230) 398 2yve_A Transcriptional regulat 26.0 28 0.0012 14.0 3.0 21 153-173 25-45 (185) 399 1ueh_A Undecaprenyl pyrophosph 25.7 20 0.00086 14.9 1.2 54 174-227 112-178 (253) 400 2v7s_A Probable conserved lipo 25.6 7.8 0.00033 17.5 -0.9 31 47-78 31-61 (215) 401 3kkd_A Transcriptional regulat 25.5 24 0.001 14.4 1.6 28 101-129 62-89 (237) 402 2ijl_A AGR_C_4647P, molybdenum 25.3 29 0.0012 13.9 3.9 35 141-177 29-63 (135) 403 3iac_A Glucuronate isomerase; 25.2 29 0.0012 13.9 2.5 59 94-154 61-119 (473) 404 1j32_A Aspartate aminotransfer 25.1 29 0.0012 13.8 3.1 42 252-294 337-381 (388) 405 1b9m_A Protein (mode); DNA-bin 24.9 30 0.0012 13.8 4.3 35 140-176 24-58 (265) 406 2qtq_A Transcriptional regulat 24.8 30 0.0012 13.8 2.8 22 152-173 36-57 (213) 407 3m8j_A FOCB protein; all-alpha 24.8 30 0.0012 13.8 2.8 48 135-182 41-91 (111) 408 1sgm_A Putative HTH-type trans 24.5 28 0.0012 14.0 1.7 19 154-172 28-46 (191) 409 2p5k_A Arginine repressor; DNA 23.9 31 0.0013 13.7 4.5 36 142-177 8-49 (64) 410 3gbg_A TCP pilus virulence reg 23.6 31 0.0013 13.7 6.0 46 152-201 185-230 (276) 411 1r8d_A Transcription activator 23.6 27 0.0011 14.1 1.5 29 152-180 2-30 (109) 412 1vi0_A Transcriptional regulat 23.5 31 0.0013 13.6 3.1 19 154-172 30-48 (206) 413 3lwj_A Putative TETR-family tr 23.5 31 0.0013 13.6 2.9 19 154-172 34-52 (202) 414 3ljl_A Transcriptional regulat 23.2 32 0.0013 13.6 2.8 29 146-174 25-56 (156) 415 2ooa_A E3 ubiquitin-protein li 22.9 32 0.0014 13.6 1.9 26 144-170 15-40 (52) 416 2esn_A Probable transcriptiona 22.9 32 0.0014 13.6 3.6 11 286-296 294-304 (310) 417 1m7y_A ACC synthase, 1-aminocy 22.9 32 0.0014 13.6 3.1 41 252-294 379-426 (435) 418 1xwr_A Regulatory protein CII; 22.8 23 0.00096 14.5 1.0 21 152-172 23-43 (97) 419 3ez1_A Aminotransferase MOCR f 22.8 29 0.0012 13.8 1.6 23 272-294 385-409 (423) 420 2oi8_A Putative regulatory pro 22.7 32 0.0014 13.6 3.3 22 152-173 36-57 (216) 421 1bw0_A TAT, protein (tyrosine 22.4 33 0.0014 13.5 3.2 42 252-294 363-407 (416) 422 3jsj_A Putative TETR-family tr 22.2 33 0.0014 13.5 3.0 19 63-83 15-33 (190) 423 2qko_A Possible transcriptiona 22.2 33 0.0014 13.5 1.9 11 64-74 35-45 (215) 424 3ihj_A Alanine aminotransferas 22.0 34 0.0014 13.5 3.1 43 253-295 441-488 (498) 425 3ij5_A 3-deoxy-D-manno-octulos 21.4 34 0.0015 13.4 2.1 99 61-160 40-145 (211) 426 2w7n_A TRFB transcriptional re 20.6 36 0.0015 13.3 3.5 50 147-204 31-80 (101) 427 2juj_A E3 ubiquitin-protein li 20.6 34 0.0014 13.5 1.5 25 144-169 11-35 (56) 428 3fdj_A DEGV family protein; GU 20.5 20 0.00085 14.9 0.3 47 145-196 130-176 (278) 429 3mkl_A HTH-type transcriptiona 20.5 36 0.0015 13.3 7.0 47 152-202 23-69 (120) 430 2zy4_A L-aspartate beta-decarb 20.5 36 0.0015 13.3 3.2 26 48-73 251-277 (546) 431 2oo9_A E3 ubiquitin-protein li 20.4 36 0.0015 13.3 1.9 26 144-170 8-33 (46) 432 2gb3_A Aspartate aminotransfer 20.1 37 0.0015 13.2 3.3 21 273-293 374-395 (409) 433 1p7n_A GAG polyprotein capsid 20.0 37 0.0015 13.2 2.6 24 58-81 43-66 (176) No 1 >1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1 Probab=100.00 E-value=0 Score=368.81 Aligned_cols=215 Identities=42% Similarity=0.697 Sum_probs=197.4 Q ss_pred CHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC Q ss_conf 02221255868733776543342100001345660240389823578999876898899999998863100155046205 Q gi|254780805|r 5 YSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI 84 (300) Q Consensus 5 ~~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~ 84 (300) .+.++|||||+||+|... .++.+|||+.|+|||+|||+.|+++.+++|++||+.+|++|||+|+|. T Consensus 3 ~~~~~~~~~l~~l~~~~~--------------~~~~~Ipl~~I~~~p~npR~~~~~~~i~eLa~SI~~~G~l~Pi~v~~~ 68 (230) T 1vz0_A 3 RKPSGLGRGLEALLPKTG--------------AGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQ 68 (230) T ss_dssp ----------------------------------CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEE T ss_pred CCCCCCCCCHHHHCCCCC--------------CCEEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 887878767788668987--------------865885799876698999986999999999999998188576389850 Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 65445333575677777642100135433346411234556665431022104899999998521011104679999743 Q gi|254780805|r 85 DNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGK 164 (300) Q Consensus 85 ~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~ 164 (300) ++ .|+||+|||||+||+.+|+++|||+|++++|.++..++++||+||++|+|+|+|.+|+++.+ +|+|++++|+++|+ T Consensus 69 ~~-~y~ii~G~rR~~Aa~~lg~~~ip~~V~~~~d~~~~~~~l~eN~~R~~lsp~e~a~~~~~l~~-~g~t~~~iA~~lg~ 146 (230) T 1vz0_A 69 GD-GYELVAGERRYRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLE-MGLTQEEVARRVGK 146 (230) T ss_dssp TT-EEEEEECHHHHHHHHHHTCSEEEEEECCCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHH-TTCCHHHHHHHHTC T ss_pred CC-EEEEECHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHCC T ss_conf 98-48996209999999987998016698418819999999998866058988999999999988-41899999988099 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC Q ss_conf 3787786565654358999987642101677777640100--4689999742224778999999764102222 Q gi|254780805|r 165 SRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQVIVSKKMSVRDTEELVQEQDNKKEK 235 (300) Q Consensus 165 s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~~Ii~~~LSVRe~E~lVk~~~~~~~~ 235 (300) |++||+++|+|++||+++++++.+|.|+.+||++|..+++ |..++..|+.++||+|++|++++++...... T Consensus 147 s~~~V~~~l~L~~Lp~~i~~~~~~g~it~~~a~~l~~l~~~~q~~~~~~i~~~~ls~rq~e~l~~~l~~~pk~ 219 (230) T 1vz0_A 147 ARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKR 219 (230) T ss_dssp CHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCCCHHHHCC----------- T ss_pred CHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC T ss_conf 9999999998751899999999859999899999872998999999999998499999999999986418998 No 2 >1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2 Probab=99.96 E-value=6.3e-32 Score=223.71 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=157.5 Q ss_pred CCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECC--CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC Q ss_conf 60240389823578999876898899999998863100155046205--6544533357567777764210013543334 Q gi|254780805|r 38 SQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFRAAKMASLSEVPVIIRN 115 (300) Q Consensus 38 ~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~--~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~ 115 (300) .+..|++..|.+++.|||+.|+++.+++|+.||+++|++||++|++. ++|+|+||+|||||+||+.+|+++|||+|.| T Consensus 12 ~~~~i~~~~i~~~~l~P~~~~~~~~~~~l~~sI~~~g~~~p~iv~~~~~~~~~y~ii~G~~R~~A~~~lg~~~ip~~~~d 91 (242) T 1vk1_A 12 PVKKVEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILD 91 (242) T ss_dssp CEECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEEC T ss_pred CCEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCHHHHHHHHHCCCCEEEEEEEE T ss_conf 81572521461477899654899999999999998298668379733688976799655899999998799755489985 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 641123455666543102210489999999852------10111046799997433787786565654358999987642 Q gi|254780805|r 116 VDNKSSLEIAIVENVQRKDLNPLEEALGYEQLI------SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKE 189 (300) Q Consensus 116 ~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~------~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~ 189 (300) ++|+++...++.||++|++++++|++.++.... .+++++++++++.+|++++++++.+++..+++.++..+..+ T Consensus 92 ~~~~~~~~~~~~en~~r~~l~~iE~~~~~~l~~~E~a~~~~~~~~~~~~~~~~gk~~~~i~~~~~l~~~~~~~l~~~~~~ 171 (242) T 1vk1_A 92 YFDEGVKVYTWYPAFXGDVNXVIERLKAEGLEVIEDEKAEEXAEXGEIAFALIGEKSFAIPGGLEEQXKVSKVLDEMDQA 171 (242) T ss_dssp TTSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHHTTSSSEEEESSSEEEECCSHHHHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89789999998850003443469999985478077897776531389999995752254311576643179999987665 Q ss_pred HCCHHHHHHHHHCCH-H-H-----HHHHHHHHCCCCHHHHHHHHHHHHCCCCC Q ss_conf 101677777640100-4-6-----89999742224778999999764102222 Q gi|254780805|r 190 EISLGHARTLVSTSD-P-L-----SLAQVIVSKKMSVRDTEELVQEQDNKKEK 235 (300) Q Consensus 190 ~is~ghar~Ll~~~~-~-~-----~la~~Ii~~~LSVRe~E~lVk~~~~~~~~ 235 (300) .. +.+.+..... . . .+...+....+|+++++++++........ T Consensus 172 ~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~v~~~v~~~~~~~~~ 221 (242) T 1vk1_A 172 XE---IELVYYGLKEDAKADMEKGEIDYVFIRXAPTKEEVMELVKRGEVFSPX 221 (242) T ss_dssp TS---SEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBSTT T ss_pred HH---HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC T ss_conf 77---788885586878887764358999986243799999999846767987 No 3 >1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1 Probab=99.93 E-value=9.2e-26 Score=184.10 Aligned_cols=116 Identities=23% Similarity=0.353 Sum_probs=99.5 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 77777642100135433346411234556665431022104899999998521011104679999743378778656565 Q gi|254780805|r 97 RFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 97 R~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) |||||+.+|+++|||+|.+..+. ..+++||+||+||||+|+|.+|++|+++ |+|+++||+++|+|++||+++|+|+ T Consensus 1 R~rA~~~ag~~~ipa~v~~~~~~---~~~l~EN~qR~~l~~~e~A~~~~~l~~~-g~t~~~iA~~lg~s~~~V~~~l~l~ 76 (178) T 1r71_A 1 RYRGSKWAGKKSIPAFIDNDYNE---ADQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLL 76 (178) T ss_dssp ----------------------C---CHHHHHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGG T ss_pred CHHHHHHCCCCCCCEEECCCCCH---HHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHC T ss_conf 93889884998444586377556---9999998650689999999999999981-7889999999699999999999980 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHC---CHHHHHHHHHHHCC Q ss_conf 43589999876421016777776401---00468999974222 Q gi|254780805|r 177 KLPSSVREMIRKEEISLGHARTLVST---SDPLSLAQVIVSKK 216 (300) Q Consensus 177 ~L~~~i~~~l~~~~is~ghar~Ll~~---~~~~~la~~Ii~~~ 216 (300) +||+.+++++.+|.|+.+|+...+.. .++..+...+.... T Consensus 77 ~lp~~v~~~~~~g~i~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 119 (178) T 1r71_A 77 DLPEKIADAFNTGRVRDVTVVNELVTAFKKRPEEVEAWLDDDT 119 (178) T ss_dssp SCCHHHHHHHHTTSCCCHHHHHHHHHHHHHCHHHHHHHHHCTT T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCHHCHHHHHHHHHHHH T ss_conf 6999999999949986799999998603415999999999861 No 4 >3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A* Probab=99.85 E-value=8.8e-22 Score=158.54 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=121.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCH Q ss_conf 64112345566654310221048999999985210-11104679999743378778656565435899998764-21016 Q gi|254780805|r 116 VDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRK-EEISL 193 (300) Q Consensus 116 ~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~-~~is~ 193 (300) ..+.++-.++..+|-+| ||||+|+|++|++++++ |++||++||+++|+|+++|+|+|+|++||++|++++.+ +.|+. T Consensus 6 ~~~~~~~~~~~~~n~~r-~lS~~E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~l~~LP~~I~~~~~~~~~is~ 84 (189) T 3mky_B 6 HHHHHSSGLVPRGSHYR-PTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSA 84 (189) T ss_dssp ------------------CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCHHHHHTSSSGGGSCH T ss_pred CCHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCH T ss_conf 20246665346777889-89999999999999986438889999999797999999999886589999999754498798 Q ss_pred HHHHHHHHCCH-----HHHHHHHHHH--CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEE Q ss_conf 77777640100-----4689999742--2247789999997641022222234566556897899999999997398799 Q gi|254780805|r 194 GHARTLVSTSD-----PLSLAQVIVS--KKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNIS 266 (300) Q Consensus 194 ghar~Ll~~~~-----~~~la~~Ii~--~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~ 266 (300) +||++|+.+.+ ...++..++. ..++++.+++.++.........++... ..........+..+. T Consensus 85 ~~a~~L~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~v~ 154 (189) T 3mky_B 85 RSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASRT----------SLSSRHQFAPGATVL 154 (189) T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTSGGGTC--------------------------- T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH----------HHHHHHHHCCCEEEE T ss_conf 9999998041006899999999999987112378799999974045678873114----------678888543581799 Q ss_pred EECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 97179822899985898999999998375 Q gi|254780805|r 267 IKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 267 I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) ++.++..+++.+.+.+.++++.|.+.|.. T Consensus 155 ~~~~~~~~~l~~~~~~~e~le~i~~~L~~ 183 (189) T 3mky_B 155 YKGDKMVLNLDRSRVPTECIEKIEAILKE 183 (189) T ss_dssp ----------------------------- T ss_pred EECCCCEEEEEEEECCHHHHHHHHHHHHH T ss_conf 93798448998622999999999999999 No 5 >1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A* Probab=99.83 E-value=5e-21 Score=153.69 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=72.6 Q ss_pred CCCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE-----ECCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 45660240389823578999876898899999998863100155046-----2056544533357567777764210013 Q gi|254780805|r 35 IPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIV-----RAIDNGLYKIIAGERRFRAAKMASLSEV 109 (300) Q Consensus 35 ~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~V-----r~~~~g~y~ii~G~rR~rAa~~~g~~~i 109 (300) ....+.+|||+.|. +|++ | .||++.+++|++||+++|+++|++| ++.+++.|+||+|||||+|++.+|+++| T Consensus 21 ~~~~i~~ipi~~I~-rp~~-r-~~d~e~i~eL~~SI~~~G~~~P~ivv~~v~~~~~~~~y~li~G~rR~rA~k~lG~~~I 97 (121) T 1yzs_A 21 RIAAVHNVPLSVLI-RPLP-S-VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI 97 (121) T ss_dssp CCCCEEEEEGGGEE-CCCC-C-CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEE T ss_pred CCCCEEECCHHHCC-CCCC-C-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCCC T ss_conf 76714885899956-8899-9-8899999999999998375468527886214578973899841799999998598822 Q ss_pred CCCCCCCCCHHHH Q ss_conf 5433346411234 Q gi|254780805|r 110 PVIIRNVDNKSSL 122 (300) Q Consensus 110 p~iv~~~~d~~~~ 122 (300) ||+|++.++.++. T Consensus 98 pa~V~~~~~~~l~ 110 (121) T 1yzs_A 98 PAKLVQSTLSDLR 110 (121) T ss_dssp EEEEEECCHHHHH T ss_pred CEEEEECCHHHHH T ss_conf 4899989999999 No 6 >1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A Probab=99.79 E-value=1.2e-20 Score=151.20 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=109.8 Q ss_pred HHHCCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHCCH-- Q ss_conf 431022104899-99999852101110467999974337877865656543589999876-42101677777640100-- Q gi|254780805|r 129 NVQRKDLNPLEE-ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIR-KEEISLGHARTLVSTSD-- 204 (300) Q Consensus 129 N~~R~dl~p~e~-A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~-~~~is~ghar~Ll~~~~-- 204 (300) |+||.+.++++| +..|++|.+ +|+||++||+++|+|+++|+|+|++++||++|++++. .+.||.|||++|+++.+ T Consensus 1 ~iq~a~~~~~~E~g~~~~~l~~-~g~tQ~elAe~lg~Srs~Vsr~lrl~~LP~~vi~~~~~~~~Ls~~~~~~L~~l~~~~ 79 (192) T 1zx4_A 1 DVQTALQHSIREIGLRLMRMKN-DGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEM 79 (192) T ss_dssp ----CCSSCHHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHT T ss_pred CCCCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHH T ss_conf 9644676869999999999998-599999999998879999999999986999999973272669889999998602157 Q ss_pred -HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC----C---CCHHHHHHHHHHHHHHCCEEEEECCCCCEEE Q ss_conf -4689999742224778999999764102222223456655----6---8978999999999973987999717982289 Q gi|254780805|r 205 -PLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIFEGSR----E---KEKYLTDLEKKISSKVGLNISIKHRNNKGQF 276 (300) Q Consensus 205 -~~~la~~Ii~~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~----~---k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI 276 (300) +..++..++.++++++.+|.++.................. . ..+........|....+..+.+..+.++|+| T Consensus 80 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~k~~~~~i 159 (192) T 1zx4_A 80 GNKNLEFDQLIQNISPEINDILSINEMAEDEVKNKILRLITKEASLLTDKGSKDKSVVTELWKFEDKDRFARKRVKGRAF 159 (192) T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCCEEEEEECCSSSSCEEEEEECSSEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEE T ss_conf 78889999999876699999998761030245788999888764102578703467899999834765178871479869 Q ss_pred EEEEC--CHHHHHHHHHHH Q ss_conf 99858--989999999983 Q gi|254780805|r 277 CIKYE--TNEQLKIICSLL 293 (300) Q Consensus 277 ~I~f~--s~eeLe~Il~kL 293 (300) +|+|. |.++++.|.+.| T Consensus 160 ~ief~~ls~e~~~~i~~~I 178 (192) T 1zx4_A 160 SYEFNRLSKELQEELDRMI 178 (192) T ss_dssp EEEEESCCHHHHHHHHHHH T ss_pred EEEECCCCHHHHHHHHHHH T ss_conf 9865889999999999999 No 7 >1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X* Probab=99.76 E-value=3.9e-19 Score=141.50 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=75.5 Q ss_pred CCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEECC----CCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 5660240389823578999876898899999998863100-155046205----65445333575677777642100135 Q gi|254780805|r 36 PESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGI-IQPLIVRAI----DNGLYKIIAGERRFRAAKMASLSEVP 110 (300) Q Consensus 36 ~~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~-lqPi~Vr~~----~~g~y~ii~G~rR~rAa~~~g~~~ip 110 (300) ...+.+|||+.|. .|+ ||. ||++.+++|++||+++|+ ++||+|++. ++++|++++|||||+|++.+|+++|| T Consensus 11 ~~~v~~iPl~~I~-~p~-~r~-~d~~~i~eL~~SI~~~G~~~pPI~V~~~~~~~~~~~Y~li~G~rR~~A~k~LG~~~Ip 87 (110) T 1xw3_A 11 IAAVHNVPLSVLI-RPL-PSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIP 87 (110) T ss_dssp CEEEEEEEGGGEE-CCS-CCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEE T ss_pred CCEEEEECHHHCC-CCC-CCC-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCEEE T ss_conf 5715895889968-999-997-8999999999999974564786079860356889708997167799999886988640 Q ss_pred CCCCCCCCHHH--HHHHHHHHHH Q ss_conf 43334641123--4556665431 Q gi|254780805|r 111 VIIRNVDNKSS--LEIAIVENVQ 131 (300) Q Consensus 111 ~iv~~~~d~~~--~~~~l~EN~~ 131 (300) |+|++.++.++ +..+.++|+| T Consensus 88 a~V~~~~~~~~~lyl~~~~~~l~ 110 (110) T 1xw3_A 88 AKLVQSTLSDLRVYLGASTPDLQ 110 (110) T ss_dssp EEEEEECHHHHHHHHGGGCCCCC T ss_pred EEEEECCHHHHHHHHHCCCCCCC T ss_conf 89998999999999744582359 No 8 >2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A Probab=94.80 E-value=0.019 Score=34.35 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=29.9 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++.++++.|+||.++|+++|.|+++|++++. T Consensus 10 G~~Lk~~r~~~gltq~~lA~~lgvs~~~is~~e~ 43 (94) T 2ict_A 10 GDIIQESLDELNVSLREFARAMEIAPSTASRLLT 43 (94) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999999999699999999984963899869872 No 9 >2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13 Probab=94.52 E-value=0.03 Score=33.07 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+..++++..+.||||.++|+++|.++++|+++.+ T Consensus 18 ~L~~~Ir~~R~~~glTQ~elA~~~gvs~~~is~iE~ 53 (83) T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83) T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999999599999999998778999999987 No 10 >1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A* Probab=94.25 E-value=0.04 Score=32.27 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=27.6 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+++..+.|+||.++|+.+|.|+++|+++.+ T Consensus 20 ~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~ 52 (92) T 1lmb_3 20 AIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (92) T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999299999999988478989999977 No 11 >2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B* Probab=94.12 E-value=0.047 Score=31.79 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=35.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|-+-+..++.+....|+||.++|+++|.|+++|+++-+ T Consensus 8 ~~~~~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~ 47 (88) T 2wiu_B 8 YSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFEN 47 (88) T ss_dssp CSHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 8999999999999998599999997863998999999987 No 12 >2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13 Probab=94.01 E-value=0.046 Score=31.87 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+..+..++.+.||||.++|+++|.+++.|++.++ T Consensus 40 ~L~~~I~~~i~~~glTQ~eaA~~lGisq~~iS~l~~ 75 (120) T 2o38_A 40 RLAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 75 (120) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999998699675565550888899899975 No 13 >2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656} Probab=94.00 E-value=0.038 Score=32.41 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=31.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565435 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +.-++.++.+.|+||+++|+.+|.|+++|+++.+=...| T Consensus 11 ~~~Lk~lr~~~~lsq~elA~~lgvs~~~is~~e~G~~~p 49 (94) T 2kpj_A 11 SENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIP 49 (94) T ss_dssp HHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCC T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999999999949989999998892883699997376799 No 14 >2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Probab=93.85 E-value=0.053 Score=31.44 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 111046799997433787786565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+||.|||+++|.||++|+++|. T Consensus 20 ~g~tQ~eIA~~lgiSR~~VsRlL~ 43 (315) T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLK 43 (315) T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 499999999987959999999999 No 15 >3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} Probab=93.65 E-value=0.03 Score=33.07 Aligned_cols=38 Identities=11% Similarity=0.355 Sum_probs=31.2 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |.--..-++.++++.|+||.++|+++|.|+++|++++. T Consensus 16 p~hPGe~Lke~~~~~gisq~eLA~~lGvs~~~is~~e~ 53 (104) T 3cec_A 16 PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVIN 53 (104) T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 98834999999998799899999997837899999975 No 16 >2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A Probab=93.62 E-value=0.043 Score=32.06 Aligned_cols=45 Identities=9% Similarity=0.126 Sum_probs=35.0 Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111-046799997433787786565654358999987 Q gi|254780805|r 142 LGYEQLISEYGY-TQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186 (300) Q Consensus 142 ~~~~~l~~~~~~-t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l 186 (300) ..++||++..|+ ||.++|+++|.|+++|+++.+=...|.+....+ T Consensus 9 e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~~~~~p~~~l~~i 54 (189) T 2fjr_A 9 DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHC 54 (189) T ss_dssp HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHH T ss_conf 9999999982998799999997979999999982899977899999 No 17 >3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* Probab=93.58 E-value=0.041 Score=32.18 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=28.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++++...+|+||.++|+.+|.|+++|+++-+ T Consensus 73 ~e~ir~~R~~~glsQ~elA~~lg~~~~ti~~~E~ 106 (133) T 3o9x_A 73 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999998499999999995999999999986 No 18 >1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2 Probab=93.56 E-value=0.07 Score=30.67 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=34.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+|++.|.+..... .. -|+|+.+||+.+|.|+++|++.++ T Consensus 4 ~~~lt~~~R~~I~~l-~~-~G~s~~~IAk~lg~s~stV~r~lk 44 (141) T 1u78_A 4 GSALSDTERAQLDVM-KL-LNVSLHEMSRKISRSRHCIRVYLK 44 (141) T ss_dssp SCCCCHHHHHHHHHH-HH-TTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCHHHHHHHHHH-HH-CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 887999999999999-99-799999999998957899999999 No 19 >3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1} Probab=93.27 E-value=0.054 Score=31.40 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=29.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++.+..+.|+|+.++|+..|.|+++|+++.+ T Consensus 9 ~~ri~~lr~~~gls~~~LA~~~Gis~~tis~~e~ 42 (78) T 3b7h_A 9 SEHLMELITQQNLTINRVATLAGLNQSTVNAMFE 42 (78) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHC T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999999399899999988939999999986 No 20 >3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi} Probab=93.19 E-value=0.088 Score=30.06 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=31.6 Q ss_pred CCCCHHH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489--99999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLE--EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e--~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..-+|.. -+..++.+..+.|+||+++|+++|+|+++|+++-+ T Consensus 6 ~~~t~~~~~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~ 49 (86) T 3eus_A 6 TLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVET 49 (86) T ss_dssp GSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHT T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 88997999999999999998499999999997969999999988 No 21 >1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3 Probab=93.16 E-value=0.073 Score=30.55 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999852101110467999974337877865656 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ++-+..++.+....|+||+++|+.+|.|+++++++-+= T Consensus 12 ~~ig~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g 49 (74) T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERG 49 (74) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 99999999999981999999998969799999999879 No 22 >2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3 Probab=93.12 E-value=0.063 Score=30.96 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998521011104679999743378778656565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -+..++.+....|+||.++|+.+|.|+++|+++..=- T Consensus 11 ig~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~ 47 (77) T 2b5a_A 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGD 47 (77) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC T ss_conf 9999999999819999999989796999999998799 No 23 >3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda} Probab=93.11 E-value=0.071 Score=30.63 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=27.8 Q ss_pred HHHHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985----210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQL----ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l----~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |.|.-++.+ ..+.|+||.++|+++|.++++|+++.. T Consensus 13 ~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~ 52 (236) T 3bdn_A 13 EDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (236) T ss_dssp HHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999999999998399999999997979999988872 No 24 >3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda} Probab=93.06 E-value=0.071 Score=30.65 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=27.8 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011104679999743378778656565435 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) |+....+.|+||+++|+++|.|+++|+++.+=...| T Consensus 17 ~~~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~p 52 (80) T 3kz3_A 17 WEKKKNELGLSYESVADKMGMGQSAVAALFNGINAL 52 (80) T ss_dssp HHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCC T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCC T ss_conf 999999939999999662098898899998799789 No 25 >3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Probab=93.04 E-value=0.085 Score=30.14 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=32.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.-.-+..++.+....||||.++|..+|.|+++|+++-+ T Consensus 8 ~d~~~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~ 47 (126) T 3ivp_A 8 YDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126) T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 3899999999999998499999996730999879999970 No 26 >1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 Probab=92.98 E-value=0.068 Score=30.75 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=29.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-++.+....||||.++|+++|.|+++|+++-+ T Consensus 4 ~rlr~lR~~~g~tq~~lA~~~Gvs~~~is~~E~ 36 (111) T 1b0n_A 4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (111) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999998399999998784988999999987 No 27 >3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343} Probab=92.97 E-value=0.054 Score=31.39 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=27.4 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.++.+.|+||.++|+++|.++++|+++.+ T Consensus 15 ik~~r~~~gltq~~lA~~~gvs~~tis~~e~ 45 (76) T 3bs3_A 15 IKVVLAEKQRTNRWLAEQMGKSENTISRWCS 45 (76) T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999099899999998889999999985 No 28 >2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1 Probab=92.89 E-value=0.069 Score=30.73 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=27.0 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +-|..+....|+||+++|+.+|.|+++|+++=. T Consensus 93 e~i~~~R~~~glsQ~~lA~~lGvs~~ti~~~E~ 125 (170) T 2auw_A 93 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYRT 125 (170) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999998699999999995999999999977 No 29 >3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12} Probab=92.82 E-value=0.052 Score=31.49 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=27.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..++++....|+||.++|+.+|.|+++|+++=. T Consensus 14 ~~ik~~R~~~gltQ~elA~~lgvs~~ti~~~E~ 46 (73) T 3fmy_A 14 EFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEK 46 (73) T ss_dssp HHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999998599999999998979999999997 No 30 >1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12 Probab=92.75 E-value=0.071 Score=30.66 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++-+..++.+....|+||.++|+.+|.++++|+++-+ T Consensus 11 ~~~ig~~ik~~R~~~glsq~elA~~~gvs~~~is~~E~ 48 (91) T 1x57_A 11 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 48 (91) T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 79999999999998199899999871989999999987 No 31 >3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua} Probab=92.71 E-value=0.078 Score=30.37 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=32.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565435 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +.-++++....|+||.++|+.+|.|+++|+++-+=-..| T Consensus 11 g~rlk~~R~~~gltq~elA~~~gvs~~~vs~~E~g~~~P 49 (114) T 3op9_A 11 AENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKP 49 (114) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCC T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCC T ss_conf 999999999859999999761088732799996587899 No 32 >1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A Probab=92.33 E-value=0.072 Score=30.62 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++..+.|+||.++|+.+|.|+++|+++-+ T Consensus 6 i~~lR~~~g~tq~~lA~~~gis~~~is~~e~ 36 (66) T 1utx_A 6 LKLIREKKKISQSELAALLEVSRQTINGIEK 36 (66) T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999998499999998872998999999987 No 33 >3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} Probab=92.32 E-value=0.11 Score=29.37 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.9 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-+..++++..+.|+||.++|+++|.|+++|+++-+ T Consensus 11 ~i~~~lk~~R~~~glsq~~lA~~~gis~~~i~~~E~ 46 (82) T 3clc_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 46 (82) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHC T ss_conf 999999999998399999995703998879999985 No 34 >3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A Probab=92.22 E-value=0.085 Score=30.14 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+..++.+....|+||.++|+++|.|+++|+++.+ T Consensus 29 iG~rLk~~R~~~glSq~~lA~~~gis~~~ls~~E~ 63 (117) T 3f52_A 29 LGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117) T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999998199999999885333999999986 No 35 >2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3 Probab=92.21 E-value=0.047 Score=31.80 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=30.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 104899999998521011104679999743378778656 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) +..+..+.-++.+....|+||.++|+.+|.|+++|+++= T Consensus 26 ~~~~~~~~~ik~~R~~~gltq~~lA~~lgvs~~ti~~~E 64 (99) T 2ppx_A 26 LASAPRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWE 64 (99) T ss_dssp ------CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 771565899999999959999999999698899999998 No 36 >1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C Probab=92.05 E-value=0.059 Score=31.17 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+.+.+ ++|++. |.+..+||+.+|.|++||.++|. T Consensus 6 Lt~~q~~~a-~~l~~~-G~s~~~iA~~~gVsr~TlYrylp 43 (52) T 1jko_C 6 INKHEQEQI-SRLLEK-GHPRQQLAIIFGIGVSTLYRYFP 43 (52) T ss_dssp SCTTHHHHH-HHHHHT-TCCHHHHHHTTSCCHHHHHHHSC T ss_pred CCHHHHHHH-HHHHHC-CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999999999-999997-89899999997979999999851 No 37 >3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV} Probab=91.93 E-value=0.12 Score=29.09 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=30.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+..++.+..+.|+||.++|+++|.++++|+++.+ T Consensus 14 ~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~ 49 (83) T 3f6w_A 14 ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTEN 49 (83) T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999998299999999897389999999987 No 38 >3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii} Probab=91.86 E-value=0.078 Score=30.40 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=27.4 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.+....|+||.++|+.+|.++++|+++.+ T Consensus 13 Ik~~r~~~g~tq~~lA~~lgis~~~is~~e~ 43 (73) T 3omt_A 13 LKSVLAEKGKTNLWLTETLDKNKTTVSKWCT 43 (73) T ss_dssp HHHHHHHHTCCHHHHHHHTTCCHHHHHHHHT T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999399899999985998667899984 No 39 >1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=91.83 E-value=0.11 Score=29.40 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=29.6 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++++..+.|+||+++|+++|.|+++|+++.. T Consensus 7 g~rik~~R~~~glsq~~la~~~gvs~~~i~~~e~ 40 (76) T 1adr_A 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (76) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999999399999999997969999999987 No 40 >2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2} Probab=91.83 E-value=0.11 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=30.0 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-+.-++++..+.|+||+++|+.+|.|+++|+++-+ T Consensus 10 ~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~ 45 (84) T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIES 45 (84) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999999499999999997479999999987 No 41 >1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A Probab=91.71 E-value=0.12 Score=29.08 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++.+....|+||.++|+++|.|+++++++.+ T Consensus 3 g~rik~~R~~~gltq~elA~~~gis~~~~~~~e~ 36 (69) T 1r69_A 3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999999999499999998863989999999986 No 42 >1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L* Probab=91.70 E-value=0.12 Score=29.07 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++.+..+.|+||.++|+++|.|+++|+++.+ T Consensus 5 ~~rik~~r~~~gltq~elA~~~gis~~~is~~e~ 38 (71) T 1zug_A 5 SERLKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (71) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999999999399999997841989999999987 No 43 >2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A Probab=91.61 E-value=0.09 Score=29.99 Aligned_cols=34 Identities=3% Similarity=-0.056 Sum_probs=28.7 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999852101110467999974337877865656 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ..++.+....|+||.++|+.+|.|+++|+++-+= T Consensus 7 ~rik~~R~~~gltq~elA~~~Gis~~tis~~E~g 40 (99) T 2l49_A 7 EKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESG 40 (99) T ss_dssp HHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9999999993999999999969899999999879 No 44 >2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3} Probab=91.60 E-value=0.15 Score=28.64 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHH Q ss_conf 9999999852101110467999974--33787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVG--KSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G--~s~s~V~~~Lr 174 (300) .-+.-++.+..+.|+||.++|+++| .|+++|+++-+ T Consensus 8 ~ig~rir~~R~~~gltq~elA~~~g~~is~~~is~~E~ 45 (71) T 2ewt_A 8 QLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHC T ss_conf 99999999998849989999989888747999999985 No 45 >3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A Probab=91.55 E-value=0.14 Score=28.66 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+..++++..+.|+||+++|+++|.|+++|+++-+ T Consensus 28 ~ig~~Ik~lR~~~glsq~elA~~~gis~~~is~iE~ 63 (99) T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999998199999999997978988999986 No 46 >3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp} Probab=91.39 E-value=0.11 Score=29.53 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=32.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH Q ss_conf 99998521011104679999743378778656565435-8999987 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP-SSVREMI 186 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~-~~i~~~l 186 (300) ..++.+....|+||+++|+++|.++++|+++-+=...| .+....+ T Consensus 26 ~~Lk~lR~~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~L~kl 71 (111) T 3mlf_A 26 KTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKY 71 (111) T ss_dssp EEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 9999999985999999999969899999999849999999999999 No 47 >2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli} Probab=91.38 E-value=0.1 Score=29.65 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=35.1 Q ss_pred HHCCCCCHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 3102210489999999-8521011104679999743378778656565-4358999987 Q gi|254780805|r 130 VQRKDLNPLEEALGYE-QLISEYGYTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~-~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300) .-|...+|-|. ++ .+++..|+||.++|+.+|.|+++|++.+.=- .+++++.-.+ T Consensus 4 ~~r~P~hPGei---L~~e~L~~~gisq~~LA~~lgvs~~~is~i~~Gk~~it~~~a~rL 59 (113) T 2eby_A 4 ATRKPTTPGDI---LLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRL 59 (113) T ss_dssp ---CCCCHHHH---HHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred CCCCCCCHHHH---HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 78999582199---999988766999999999969899999999938778999999999 No 48 >2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei} Probab=91.36 E-value=0.16 Score=28.43 Aligned_cols=37 Identities=30% Similarity=0.286 Sum_probs=28.2 Q ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 899999998521--0111046799997433787786565 Q gi|254780805|r 138 LEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 138 ~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+.+..++.+.. +.||||+++|+.+|.|+++|+++-+ T Consensus 33 ~~iG~~I~~~R~~~~kglTQ~eLA~~lgvs~~~is~~E~ 71 (107) T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYER 71 (107) T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999999999988699899999998878999999985 No 49 >2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A Probab=91.05 E-value=0.17 Score=28.14 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=31.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999985210111046799997433787786565 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+-+.-++++..+.|+|++++|++.|.|++++++.=+ T Consensus 9 ~~lg~rir~lR~~~gltl~eLA~~~GvS~~~lS~iE~ 45 (198) T 2bnm_A 9 TGFAELLKDRREQVKMDHAALASLLGETPETVAAWEN 45 (198) T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999999998599999999887979999998673 No 50 >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} Probab=90.95 E-value=0.79 Score=23.91 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=60.4 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEE--C----------------CCCCCCCCCCCHHHHHH------HHHHHCCCCCCCCC Q ss_conf 988999999988631001550462--0----------------56544533357567777------76421001354333 Q gi|254780805|r 59 ESEGLEDLCQSIKSHGIIQPLIVR--A----------------IDNGLYKIIAGERRFRA------AKMASLSEVPVIIR 114 (300) Q Consensus 59 ~~~~l~eLa~SI~~~G~lqPi~Vr--~----------------~~~g~y~ii~G~rR~rA------a~~~g~~~ip~iv~ 114 (300) ....++.+...++..|...|-++. + .++.-|.-++|..|+.+ |...+. ...+.+. T Consensus 49 ~~~a~~~i~~~l~~~~~~~~~~~~vd~~d~~~~v~~v~~~i~~~~~~v~vnlsgG~r~l~~~~~~A~~~~~~-~~~i~~~ 127 (244) T 2wte_A 49 TRAAIESLRAQISRLNYPPPRIYEIEITDFNLALSKILDIILTLPEPIISDLTMGMRMINTLILLGIIVSRK-RFTVYVR 127 (244) T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEEECSSSCHHHHHHHHHHHHHTTC-CEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCC-CCEEEEE T ss_conf 999999999999975999626999756368999999999985169948999469940899999999995777-7379999 Q ss_pred CCCCHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 46411234--5566654310221048999999985210111046799997433787786565 Q gi|254780805|r 115 NVDNKSSL--EIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 115 ~~~d~~~~--~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..++.... .....-+....+|+..+ ...+..|.+.-++|+.++|+.+|.|++++++.+. T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~ls~~~-~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~ 188 (244) T 2wte_A 128 DEGGGSRVISFNDNTIRALMRDYSREE-MKLLNVLYETKGTGITELAKMLDKSEKTLINKIA 188 (244) T ss_dssp CTTSCSCEEEEEHHHHHHHHSCCCHHH-HHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHH T ss_pred EECCCCEEEEECHHHHHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 943872257832556888872999999-9999999977998999999997979889999999 No 51 >2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4} Probab=90.77 E-value=0.037 Score=32.48 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=28.5 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999852101110467999974337877865656 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) .-++.+..+.|+||.++|+.+|.|+++|+++-+= T Consensus 4 ~rik~lR~~~glsq~eLA~~~Gis~~~is~~E~G 37 (158) T 2p5t_A 4 KNIKSLRKTHDLTQLEFARIVGISRNSLSRYENG 37 (158) T ss_dssp ---------------------------------- T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC T ss_conf 9999999984999999999989599999999879 No 52 >1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2 Probab=90.66 E-value=0.02 Score=34.19 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=57.9 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC------CC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23455666543102210489999999852101------11----------046799997433787786565654358999 Q gi|254780805|r 120 SSLEIAIVENVQRKDLNPLEEALGYEQLISEY------GY----------TQNDIGSIVGKSRSHVANILRILKLPSSVR 183 (300) Q Consensus 120 ~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~------~~----------t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~ 183 (300) +...+.++||++|.+|+++|.|.+++...... |. .+......++.......+.+++..++.+.+ T Consensus 107 ~r~~l~~iE~~~~~~l~~~E~a~~~~~~~~~~~~~~~~gk~~~~i~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 186 (242) T 1vk1_A 107 XGDVNXVIERLKAEGLEVIEDEKAEEXAEXGEIAFALIGEKSFAIPGGLEEQXKVSKVLDEMDQAXEIELVYYGLKEDAK 186 (242) T ss_dssp ESCHHHHHHHHHHTTCCCEECTTHHHHHHTTSSSEEEESSSEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEESCHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 03443469999985478077897776531389999995752254311576643179999987665777888855868788 Q ss_pred HHHHHHHCCHHHHHHHHHCCH Q ss_conf 987642101677777640100 Q gi|254780805|r 184 EMIRKEEISLGHARTLVSTSD 204 (300) Q Consensus 184 ~~l~~~~is~ghar~Ll~~~~ 204 (300) ..+..+.++...++..++..+ T Consensus 187 ~~~~~~~i~~~~~~~~~s~~~ 207 (242) T 1vk1_A 187 ADMEKGEIDYVFIRXAPTKEE 207 (242) T ss_dssp HHHHTTSCSEEEECCCCCHHH T ss_pred HHHHHHHHHHHHHHCCCCHHH T ss_conf 877643589999862437999 No 53 >3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae} Probab=90.58 E-value=0.13 Score=29.06 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=27.9 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++++....||||.++|+.+|.|+++|+++-+ T Consensus 72 ~l~~lR~~~glTQ~elA~~~gis~~~is~iE~ 103 (141) T 3kxa_A 72 TFVSLRMKKGFTQSELATAAGLPQPYLSRIEN 103 (141) T ss_dssp CHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999998299899999998969999999987 No 54 >1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Probab=90.47 E-value=0.18 Score=27.99 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+.+..++++..+.|+|++++|+++|.|++++++.-+ T Consensus 9 ~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~ 46 (192) T 1y9q_A 9 KSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 46 (192) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999999999998199999999998939999999986 No 55 >2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L Probab=90.21 E-value=0.13 Score=28.97 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=29.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++.+....|+||.++|+.+|.|+++|+++.. T Consensus 7 g~rlr~~R~~~glsq~~la~~~gvs~~~i~~~e~ 40 (68) T 2r1j_L 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER 40 (68) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999999998599999998873999999999987 No 56 >2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural genomics, PSI-2, protein structure initiative; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3 Probab=89.51 E-value=0.15 Score=28.49 Aligned_cols=76 Identities=13% Similarity=0.007 Sum_probs=45.6 Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCHH--HH--------HHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6602403898235789998768988--99--------9999988631001550462056544533357567777764210 Q gi|254780805|r 37 ESQDCISIHSIVPNPHNPRNYFESE--GL--------EDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASL 106 (300) Q Consensus 37 ~~~~~i~i~~i~~~p~~pR~~~~~~--~l--------~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~ 106 (300) ..+.+|+|++++|- |.---+++- +. ++...-++. .|+-|.--++|.+.+++||++.+|...+|. T Consensus 7 ~~l~~V~i~~LrPT--Q~~VG~~eV~~k~~~~~~~~~~~~~~yl~~----k~vPvV~gp~g~lyl~D~HH~~rAl~e~g~ 80 (205) T 2hwj_A 7 PRLSRIAIDKLRPT--QIAVGFREVELKRKEWRETRKKDGDDFLGN----HIVPVVAGPKDRAYLIDHHHLVLALSKEGV 80 (205) T ss_dssp CBEEEEEGGGCBCS--BSEECHHHHHHHHHHHHTCC-----CCTTC----BEEEEEECSTTCEEECSCHHHHHHHHHTTC T ss_pred CCEEEEEHHHCCCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHC----CCCCEEECCCCCEEEECCHHHHHHHHHCCC T ss_conf 80588787863684--175789999999999986088889999855----996789889998567775188899997688 Q ss_pred CCCCCCC-CCCCC Q ss_conf 0135433-34641 Q gi|254780805|r 107 SEVPVII-RNVDN 118 (300) Q Consensus 107 ~~ip~iv-~~~~d 118 (300) +++++.| .|+++ T Consensus 81 ~~v~v~v~~d~s~ 93 (205) T 2hwj_A 81 EHVLTSEVAKFSH 93 (205) T ss_dssp CEEEEEEEEECTT T ss_pred CEEEEEEEEECCC T ss_conf 7278999530454 No 57 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=89.26 E-value=0.53 Score=25.04 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=39.9 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 66654310221048999999985210111046799997433787786565 Q gi|254780805|r 125 AIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 125 ~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+.+.++.-+|+|.|-. .|.-|....+.|+.+||+.+|.++++|++.|. T Consensus 8 ~l~~~L~~~glt~~e~~-v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~ 56 (109) T 1sfx_A 8 ELVKALEKLSFKPSDVR-IYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109) T ss_dssp HHHHHHHHTCCCHHHHH-HHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHH-HHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 99999998599999999-99999804888799999997567018999999 No 58 >1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A Probab=88.78 E-value=0.45 Score=25.49 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=30.0 Q ss_pred CCHHHH--HHHHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHHHHHH Q ss_conf 104899--9999985210111--04679999743-378778656565 Q gi|254780805|r 135 LNPLEE--ALGYEQLISEYGY--TQNDIGSIVGK-SRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~--A~~~~~l~~~~~~--t~~~lA~~~G~-s~s~V~~~LrLl 176 (300) ||+-++ -..+++++.+.|+ |+.|||+.+|. |.++|.+++..| T Consensus 4 LT~kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~L 50 (202) T 1jhf_A 4 LTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL 50 (202) T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 59999999999999999829896699999984999728999999988 No 59 >1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A Probab=88.00 E-value=0.53 Score=25.03 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=34.2 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|..++.-+...++..+..--++++.++|+.+|.++++|++.++ T Consensus 4 kRk~~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k 47 (131) T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK 47 (131) T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 42318999999999999977888899999998919999999992 No 60 >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Probab=87.58 E-value=0.87 Score=23.66 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=42.1 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 23455666543102210489999999852101110467999974337877865656 Q gi|254780805|r 120 SSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 120 ~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ...+-+-++..-++ +|..-|..++..+-.++++|..++..+|.|.++|+..|+. T Consensus 14 ~~e~~~~i~~~~~e--dp~~~a~eIk~~L~~~~i~q~~~~~~~g~SqSsiS~~L~~ 67 (221) T 2h8r_A 14 AAEQRAEVDRMLSE--DPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNK 67 (221) T ss_dssp HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTT T ss_pred CCCCHHHHHHHHHH--CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCC T ss_conf 42100236888855--8899999999999866984555300124444378898718 No 61 >1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A Probab=87.32 E-value=0.35 Score=26.22 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.7 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 21011104679999743378778656-5654358999987 Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANIL-RILKLPSSVREMI 186 (300) Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~L-rLl~L~~~i~~~l 186 (300) ..+-|+|.++||+.+|+|..||+..+ .-..||++.-+.+ T Consensus 22 K~~KGlTwe~IAe~vG~S~v~vaaa~lGQ~~l~~e~A~~l 61 (156) T 1dw9_A 22 KAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLV 61 (156) T ss_dssp HHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 9984999999999979799999999845777998999999 No 62 >1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12 Probab=86.81 E-value=0.55 Score=24.94 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=29.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|. ..+.+.++.+++...+.|+.||.||.++.+.|+ T Consensus 40 ~~Er-~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrklk 76 (81) T 1umq_A 40 RVRW-EHIQRIYEMCDRNVSETARRLNMHRRTLQRILA 76 (81) T ss_dssp HHHH-HHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHH-HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999-999999999727799999997989999999999 No 63 >2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Probab=86.31 E-value=0.67 Score=24.39 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=36.6 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) ++|++.+.|..++..+..++++|...|+. +|.|+++++..|+ T Consensus 2 e~ldT~~ia~~Ik~~L~~~~I~Q~~fa~~vlg~SQ~tLS~lL~ 44 (164) T 2d5v_A 2 EEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLR 44 (164) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHC T ss_conf 4017999999999999887997899999984578889999871 No 64 >1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A Probab=85.78 E-value=1.4 Score=22.33 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=12.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~Lr 174 (300) |.+++|..+|.+...+...+. T Consensus 117 t~~e~a~~l~~~~~~~~~~l~ 137 (239) T 1rp3_A 117 TDEEVAKELGISTEELFKTLD 137 (239) T ss_dssp CHHHHHHHHTSCHHHHHHHHH T ss_pred CHHHHHHCCCCCHHHHHHHHH T ss_conf 999995414998999999987 No 65 >2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus} Probab=85.61 E-value=0.65 Score=24.45 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=16.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|..++|+.+|.|++||.++++ T Consensus 175 G~s~~~IA~~l~is~~Tv~R~l~ 197 (209) T 2r0q_C 175 GQAISKIAKEVNITRQTVYRIKH 197 (209) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 59999999998969999999999 No 66 >2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8 Probab=85.18 E-value=0.14 Score=28.80 Aligned_cols=11 Identities=36% Similarity=0.199 Sum_probs=4.4 Q ss_pred CCHHHHHHHHH Q ss_conf 47789999997 Q gi|254780805|r 217 MSVRDTEELVQ 227 (300) Q Consensus 217 LSVRe~E~lVk 227 (300) +|-.+.+.+.+ T Consensus 255 ~s~~~~~~L~~ 265 (345) T 2o0m_A 255 MSDDEMVMLKQ 265 (345) T ss_dssp CCHHHHHHHHH T ss_pred CCHHHHHHHHH T ss_conf 99899999987 No 67 >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50 Probab=85.11 E-value=1 Score=23.14 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=30.9 Q ss_pred CCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852101-11046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++.+. ..+..|+... ..|..+||+.+|.++++|++.|. T Consensus 17 ~gLs~~~~-~iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~ 58 (109) T 2d1h_A 17 YKITDTDV-AVLLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109) T ss_dssp HTCCHHHH-HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 69599999-9999999759898999999998978858999999 No 68 >2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV} Probab=84.76 E-value=0.98 Score=23.32 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|+|-+...-+-+.. .|+|..|||+.+|.|.++|..++. T Consensus 14 ~~Lp~~~r~v~~l~~~--~g~s~~EIA~~lgis~~tvk~~l~ 53 (70) T 2o8x_A 14 ADLTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVA 53 (70) T ss_dssp TSSCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8699999999998999--099999999998979999999999 No 69 >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} Probab=84.71 E-value=0.67 Score=24.37 Aligned_cols=11 Identities=18% Similarity=0.531 Sum_probs=5.0 Q ss_pred HHHHHHHHHHH Q ss_conf 78999999764 Q gi|254780805|r 219 VRDTEELVQEQ 229 (300) Q Consensus 219 VRe~E~lVk~~ 229 (300) +||.+..+... T Consensus 221 i~EL~~vi~~~ 231 (304) T 1ojl_A 221 IRELENAIERA 231 (304) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 70 >3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis} Probab=84.38 E-value=2 Score=21.32 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=28.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+....+.+.. .|+|.++||+.+|.|.++|..++. T Consensus 38 L~~~~r~vi~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ 75 (92) T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLH 75 (92) T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999999--399999999998969999999999 No 71 >2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3 Probab=84.36 E-value=0.92 Score=23.48 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++|+.++|+++|.|+++|+++-+ T Consensus 27 ~~s~~elA~~~gis~~~is~iE~ 49 (86) T 2ofy_A 27 DMSMVTVAFDAGISVETLRKIET 49 (86) T ss_dssp TSCHHHHHHHHTCCHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHC T ss_conf 78999999997979999999986 No 72 >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} Probab=84.03 E-value=1.2 Score=22.69 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=27.1 Q ss_pred CCHHHH--HHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH Q ss_conf 104899--9999985210111--04679999743378778656 Q gi|254780805|r 135 LNPLEE--ALGYEQLISEYGY--TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 135 l~p~e~--A~~~~~l~~~~~~--t~~~lA~~~G~s~s~V~~~L 173 (300) ||+-++ ...++.++.+.|+ |++++|+.+|.|.+.+..+| T Consensus 3 LT~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L 45 (196) T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196) T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHH T ss_conf 8989999999999999984989669999998299964578889 No 73 >1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 Probab=83.87 E-value=1 Score=23.14 Aligned_cols=40 Identities=23% Similarity=0.145 Sum_probs=31.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..|+|-|..... ++.+ |+|..+||..+|.|..+|.++++ T Consensus 9 ~~~LT~rE~~vl~--~l~~-G~s~~eIA~~L~iS~~TV~~h~~ 48 (74) T 1fse_A 9 KPLLTKREREVFE--LLVQ-DKTTKEIASELFISEKTVRNHIS 48 (74) T ss_dssp CCCCCHHHHHHHH--HHTT-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9987999999999--9992-79999999997989999999999 No 74 >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Probab=83.67 E-value=2 Score=21.29 Aligned_cols=49 Identities=24% Similarity=0.169 Sum_probs=32.6 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 66543102210489999999852-101110467999974337877865656 Q gi|254780805|r 126 IVENVQRKDLNPLEEALGYEQLI-SEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 126 l~EN~~R~dl~p~e~A~~~~~l~-~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) +.++.+.-.+++.+ +..+.-|. ..-.+|..+||+.+|.|+++|++.++- T Consensus 15 ~~~~~~~~Gl~~~~-~~il~~L~~~~~p~t~~eLa~~l~is~s~vs~~l~~ 64 (152) T 1ku9_A 15 FSELAKIHGLNKSV-GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKK 64 (152) T ss_dssp HHHHHHHTTCCHHH-HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHCCCCHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999982989999-999999997698929999999989688579999999 No 75 >2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis} Probab=83.48 E-value=1.1 Score=23.10 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=31.7 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+.+.|+|-|.... +++.+ |+|..+||..+|.|..+|.++++ T Consensus 8 ~~~~~Lt~rE~~vl--~~~~~-G~s~~eIA~~l~iS~~TV~~~~~ 49 (73) T 2krf_A 8 KEQDVLTPRECLIL--QEVEK-GFTNQEIADALHLSKRSIEYSLT 49 (73) T ss_dssp CSSSSSCHHHHHHH--HHHHT-TSCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 78788899999999--99995-89999984161888999999999 No 76 >3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A Probab=83.38 E-value=1.8 Score=21.65 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=33.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565--6543589999876 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR--ILKLPSSVREMIR 187 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr--Ll~L~~~i~~~l~ 187 (300) +-.+++.++..|+|.+++|++.|.|.+++++..| ....+-..+..+. T Consensus 232 ~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA 280 (443) T 3g7d_A 232 GSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLG 280 (443) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 8999999997188899999886989999999985688898899999999 No 77 >1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12 Probab=82.92 E-value=1 Score=23.23 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=30.9 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 048999999985210111046799997433787786565654 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .-+|.. .+.+.++.+++.+.+.|+.+|.+|+++.+.|+=+. T Consensus 49 ~~~Er~-lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk~~g 89 (91) T 1ntc_A 49 PELERT-LLTTALRHTQGHKQEAARLLGWGAATLTAKLKELG 89 (91) T ss_dssp HHHHHH-HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 999999-99999999689599999997989999999999878 No 78 >1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3 Probab=82.48 E-value=1.4 Score=22.41 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=27.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+.....-+.. .|+|..++|+.+|.|+++|.+.+. T Consensus 23 L~~~qR~vi~L~~~--~~ls~~EIA~~lgis~~~V~~~l~ 60 (113) T 1s7o_A 23 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIK 60 (113) T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999999--731299999998979999999999 No 79 >1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A Probab=82.00 E-value=1.4 Score=22.34 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=30.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-|.-.. +++.. |+|..+||..+|.|..+|.++++ T Consensus 21 ~LT~rE~~vl--~lla~-G~s~~eIA~~L~iS~~TV~~~~~ 58 (82) T 1je8_A 21 QLTPRERDIL--KLIAQ-GLPNKMIARRLDITESTVKVHVK 58 (82) T ss_dssp GSCHHHHHHH--HHHTT-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 1999999999--99992-89999999897959999999999 No 80 >2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima} Probab=81.98 E-value=0.95 Score=23.41 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=27.6 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998521011104679999743378778656 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .+..+++.....|+|++++|+++|.|.++|++.= T Consensus 8 iG~~Lr~~R~~~glS~~elA~~l~Is~~~l~~iE 41 (112) T 2wus_R 8 LGETFRKKREERRITLLDASLFTNINPSKLKRIE 41 (112) T ss_dssp HHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999969999999999856899999988 No 81 >3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A Probab=81.79 E-value=1.3 Score=22.46 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=29.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|++-|.-. + +++.+ |+|..+||+.+|.|..+|.++++ T Consensus 26 ~~LT~rE~ev-l-~ll~~-G~s~~eIA~~L~iS~~TV~~~~~ 64 (95) T 3c57_A 26 SGLTDQERTL-L-GLLSE-GLTNKQIADRMFLAEKTVKNYVS 64 (95) T ss_dssp -CCCHHHHHH-H-HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHH-H-HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 3049999999-9-99990-79999998794978999999999 No 82 >2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} Probab=81.67 E-value=1.5 Score=22.13 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=29.3 Q ss_pred HHHCCCCCHH--HHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4310221048--999999985210111-------046799997433787786565654 Q gi|254780805|r 129 NVQRKDLNPL--EEALGYEQLISEYGY-------TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 129 N~~R~dl~p~--e~A~~~~~l~~~~~~-------t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |++|+.=.|+ +.+..+.+.+....| |..+||+.+|.||.+|.+.|+.|. T Consensus 2 ~~~~~~~~P~y~~i~~~i~~~I~~G~~~~G~~LPse~~La~~~~VSr~TVR~Al~~L~ 59 (243) T 2wv0_A 2 NINKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLV 59 (243) T ss_dssp CCCTTSSSCHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 1589999888999999999999839999939993799999997969999999999999 No 83 >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} Probab=80.92 E-value=0.98 Score=23.31 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=29.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHH Q ss_conf 104899999998521011104679999743--378778656565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGK--SRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~--s~s~V~~~LrLl 176 (300) |+|.|.... .-|.+....|+.+||+.+|. |+++|+.+++-| T Consensus 11 M~~~D~rIL-E~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L 53 (111) T 3b73_A 11 MTIWDDRIL-EIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKL 53 (111) T ss_dssp CCHHHHHHH-HHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHH T ss_pred CCCCHHHHH-HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 460199999-9999849999999999868884799999999999 No 84 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=80.40 E-value=2.8 Score=20.37 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=32.8 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 4310221048999999985210111046799997433787786565 Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 129 N~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+...++++.+ +..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 21 ~l~~~~lt~~q-~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~ 65 (138) T 3bpv_A 21 ELGHLNLTDAQ-VACLLRIHREPGIKQDELATFFHVDKGTIARTLR 65 (138) T ss_dssp HSGGGTCCHHH-HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 98657989999-9999999858997999999998979879999999 No 85 >1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A* Probab=80.25 E-value=2.8 Score=20.34 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=29.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..||+-|.-. -+++.. |.|-.+||..+|.|..||..+++ T Consensus 172 ~~LT~RE~ev--L~~~a~-G~s~~eIA~~L~iS~~TV~~hl~ 210 (234) T 1l3l_A 172 AWLDPKEATY--LRWIAV-GKTMEEIADVEGVKYNSVRVKLR 210 (234) T ss_dssp CCCCHHHHHH--HHHHTT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHH--HHHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7899899999--999976-99999999996989999999999 No 86 >3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} Probab=80.22 E-value=1.1 Score=22.89 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.2 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..|.+..+++..+||+.+|.|+++||..|+.|. T Consensus 30 l~~L~~~~~~~v~eLa~~l~~s~stvS~HL~~L~ 63 (99) T 3cuo_A 30 LCMLSGSPGTSAGELTRITGLSASATSQHLARMR 63 (99) T ss_dssp HHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9998589990799977455859879999999999 No 87 >3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} Probab=80.19 E-value=1.5 Score=22.09 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999852101110467999974337877865656543 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) +|.. .+...+..+++...+.|+.+|.||+++.+.|+=+.+ T Consensus 19 ~E~~-~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~klkk~gI 58 (63) T 3e7l_A 19 FEKI-FIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSLNI 58 (63) T ss_dssp HHHH-HHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHTTC T ss_pred HHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 9999-999999991998999999989799999999999289 No 88 >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} Probab=79.66 E-value=1.3 Score=22.58 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=26.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111046799997433787786565654 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ..|.+...++..++|+.+|.|+++||..|+.|+ T Consensus 34 ~~L~~~~~~~v~el~~~l~~s~stvS~HL~~L~ 66 (99) T 2zkz_A 34 NELYKHKALNVTQIIQILKLPQSTVSQHLCKMR 66 (99) T ss_dssp HHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999778992799989988849769999999999 No 89 >2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP} Probab=79.51 E-value=3 Score=20.19 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-|.- .-+++.. |.|-.|||..+|.|..||.++++ T Consensus 174 ~~LT~RE~e--vL~l~a~-G~t~~eIA~~L~iS~~TV~~h~~ 212 (236) T 2q0o_A 174 QMLSPREML--CLVWASK-GKTASVTANLTGINARTVQHYLD 212 (236) T ss_dssp GSCCHHHHH--HHHHHHT-TCCHHHHHHHHCCCHHHHHHHHH T ss_pred CCCCHHHHH--HHHHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 439987999--9999866-99999999996999999999999 No 90 >1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ... Probab=79.26 E-value=1.6 Score=21.95 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=30.4 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0489999999852101110467999974337877865656543 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) .-+|...-- +.++.+++.+.+.|+.+|.||+++.+.|+-..+ T Consensus 56 ~~~E~~~I~-~aL~~~~gn~~~aA~~LGisR~tL~~klk~~~i 97 (98) T 1eto_A 56 AEVEQPLLD-MVMQYTLGNQTRAALMMGINRGTLRKKLKKYGM 97 (98) T ss_dssp HHHHHHHHH-HHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC T ss_pred HHHHHHHHH-HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 999999999-999991998899999979899999999998683 No 91 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 Probab=79.13 E-value=1.9 Score=21.46 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=61.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565654358999987642101677777640100468999974 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIV 213 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii 213 (300) .|+++|... +..|.+....|..+||+++|.|+++|.+++ +.+..+|-|...++ .+ ++.++ T Consensus 4 ~lD~~D~~I-L~~L~~d~R~s~~~iA~~lglS~~tv~~Ri---------~rL~~~GiI~~~~~--~v---d~~~l----- 63 (151) T 2cyy_A 4 PLDEIDKKI-IKILQNDGKAPLREISKITGLAESTIHERI---------RKLRESGVIKKFTA--II---DPEAL----- 63 (151) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHHCSCHHHHHHHH---------HHHHHHTSSCCCCC--CC---CGGGG----- T ss_pred CHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCCCEEEE--EE---CHHHH----- T ss_conf 772899999-999998489999999999891999999999---------99984598200379--98---89997----- Q ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE-CCCCCEEEEEEECCHHHHHHHHHH Q ss_conf 2224778999999764102222223456655689789999999999739879997-179822899985898999999998 Q gi|254780805|r 214 SKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIK-HRNNKGQFCIKYETNEQLKIICSL 292 (300) Q Consensus 214 ~~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~-~~~~kGkI~I~f~s~eeLe~Il~k 292 (300) ++++. .++ .- + ........+...+...=+...--. ....---+.+.+.+.++++.+++. T Consensus 64 --g~~~~---~~v--------~~-~------~~~~~~~~~~~~l~~~p~V~~~~~~tG~~dl~~~v~~~~~~~l~~~~~~ 123 (151) T 2cyy_A 64 --GYSML---AFI--------LV-K------VKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNFLDL 123 (151) T ss_dssp --TCCEE---EEE--------EE-E------ECTTCHHHHHHHHHTCTTEEEEEECSSSSSEEEEEEESSHHHHHHHHHH T ss_pred --CCCCE---EEE--------EE-E------ECCCCHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEECCHHHHHHHHHH T ss_conf --89856---999--------99-9------6354058999999769993099982068878999998999999999999 Q ss_pred HCC Q ss_conf 375 Q gi|254780805|r 293 LGE 295 (300) Q Consensus 293 L~~ 295 (300) |.. T Consensus 124 l~~ 126 (151) T 2cyy_A 124 IGS 126 (151) T ss_dssp HHT T ss_pred HHC T ss_conf 845 No 92 >3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1} Probab=79.12 E-value=1.3 Score=22.56 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=28.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565654358 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPS 180 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~ 180 (300) ||+++.| ++.+| +|..+|+++|.|+++|++-+.=-..|+ T Consensus 1 M~~i~~A------I~~~G-~q~~lAr~lGVsq~aVs~W~~~~~vP~ 39 (79) T 3bd1_A 1 MNAIDIA------INKLG-SVSALAASLGVRQSAISNWRARGRVPA 39 (79) T ss_dssp CCHHHHH------HHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCCG T ss_pred CCHHHHH------HHHHC-CHHHHHHHHCCCHHHHHHHHHCCCCCH T ss_conf 9589999------99968-999999992999999999984699999 No 93 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=78.95 E-value=3.1 Score=20.08 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=34.1 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 654310221048999999985210111046799997433787786565 Q gi|254780805|r 127 VENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 127 ~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+.+...+|++.+ +..+..+....+.|+.+||+.++.++++|++.+. T Consensus 27 ~~~~~~~glt~~q-~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~ 73 (155) T 1s3j_A 27 LESMEKQGVTPAQ-LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMAD 73 (155) T ss_dssp HHHHHHTTCCHHH-HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9998785989999-9999999986997999999998969989999999 No 94 >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Probab=78.36 E-value=1.8 Score=21.56 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=24.4 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .....+..+||+.+|.|+++||..|+.|. T Consensus 33 ~~~~~~v~ela~~l~~s~~tvS~HL~~L~ 61 (98) T 3jth_A 33 HNQELSVGELCAKLQLSQSALSQHLAWLR 61 (98) T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 72993799999998859567889999999 No 95 >2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster} Probab=78.10 E-value=2.2 Score=21.02 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=40.5 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 43102210489999999852101110467999974337877865656543589999876 Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIR 187 (300) Q Consensus 129 N~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~ 187 (300) .-.|..+++-++..+++.+ + -|.+..++|+.+|.+.++|.+-++-.+ .++..+. T Consensus 17 kr~rr~~t~e~K~~iv~~~-e-~G~s~~~vAre~gi~~stl~~W~k~~~---~~~~~~~ 70 (87) T 2elh_A 17 KRPLRSLTPRDKIHAIQRI-H-DGESKASVARDIGVPESTLRGWCKNED---KLRFMSR 70 (87) T ss_dssp SSCCSSCCHHHHHHHHHHH-H-HTCCHHHHHHHHTCCHHHHHHHHHHHH---HHHHHTT T ss_pred CCCCCCCCHHHHHHHHHHH-H-CCCCHHHHHHHHCCCHHHHHHHHHHHH---HHHHHHH T ss_conf 9888718999999999999-8-799999999997979989999999999---9876530 No 96 >3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp} Probab=77.85 E-value=3.4 Score=19.87 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=25.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 111046799997433787786565654358999987 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l 186 (300) .|+|..+||+.+|.|..+|++++. ..-..++..+ T Consensus 123 ~g~s~~EIA~~lgis~~~V~~~~~--Ra~~kl~~~l 156 (164) T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQ--RIRKKSEEWI 156 (164) T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH--HHHHHHHHHH T ss_pred HCCCHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHH T ss_conf 238999999998919999999999--9999999999 No 97 >1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2 Probab=77.84 E-value=2.2 Score=21.10 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=30.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-|.... +++.. |+|..+||+.+|.|..+|.++++ T Consensus 33 ~~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~ 71 (99) T 1p4w_A 33 KRLSPKESEVL--RLFAE-GFLVTEIAKKLNRSIKTISSQKK 71 (99) T ss_dssp SSCCHHHHHHH--HHHHH-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99899999999--99993-89999997772998999999999 No 98 >1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Probab=77.50 E-value=1.7 Score=21.83 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=25.7 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .|.....++..+||+.+|.|+++||..|+.|. T Consensus 50 ~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~ 81 (122) T 1u2w_A 50 ALCQDEELCVCDIANILGVTIANASHHLRTLY 81 (122) T ss_dssp HHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99878892799999998887326999999999 No 99 >1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7 Probab=77.38 E-value=2.3 Score=20.95 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=37.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) +.|+..|.|..++..+..++++|.-.|+. +|+|+.+++.+|+ T Consensus 15 ~~ldT~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rsQGtlSdLL~ 57 (101) T 1x2l_A 15 EQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA 57 (101) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH T ss_conf 6358999999999999994985999999998108588999983 No 100 >1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} Probab=77.35 E-value=2 Score=21.35 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=29.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-|.-. +. ++.. |+|..+||+.+|.|..+|.++++ T Consensus 16 ~LT~rE~~v-l~-~l~~-G~s~~eIA~~l~iS~~TV~~~~~ 53 (79) T 1x3u_A 16 TLSERERQV-LS-AVVA-GLPNKSIAYDLDISPRTVEVHRA 53 (79) T ss_dssp HHCHHHHHH-HH-HHTT-TCCHHHHHHHTTSCHHHHHHHHH T ss_pred CCCHHHHHH-HH-HHHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 599999999-99-9990-79999999997988989999999 No 101 >2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Probab=77.14 E-value=2.5 Score=20.76 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=31.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 1048999999985210111046799997433787786565654358999987642101 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) |+.+|.. -+..|....-.+..+||+.+|.|+++|.++++ .+..+|-|. T Consensus 15 LD~~D~~-IL~~Lq~d~R~s~~eIA~~lgls~~tv~~Ri~---------rLe~~GvI~ 62 (171) T 2ia0_A 15 LDDLDRN-ILRLLKKDARLTISELSEQLKKPESTIHFRIK---------KLQERGVIE 62 (171) T ss_dssp CCHHHHH-HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSEE T ss_pred CCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE T ss_conf 4999999-99999984899999999998909999999999---------999789647 No 102 >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 Probab=77.01 E-value=2.7 Score=20.50 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=21.3 Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210--111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.+++|..+-+++.. .++|..+||+++|.+++++.++|+ T Consensus 4 v~sl~Ral~IL~~~a~~~~~~tl~eia~~lglpksT~~Rll~ 45 (249) T 1mkm_A 4 MNTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMV 45 (249) T ss_dssp CTTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 649999999999997389998999999987919999999999 No 103 >1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A* Probab=77.01 E-value=3.6 Score=19.72 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=36.6 Q ss_pred CCHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH Q ss_conf 10489999999-----8521011104679999743378778656565-43589999876421 Q gi|254780805|r 135 LNPLEEALGYE-----QLISEYGYTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMIRKEE 190 (300) Q Consensus 135 l~p~e~A~~~~-----~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l~~~~ 190 (300) ++|-|.-.--+ +++.+..+|+.+|++.+|.|-+||++-=+-+ ..++..+..|.... T Consensus 36 lT~~E~~~la~R~~ia~~L~~g~~s~reI~~~~gvS~aTItR~s~~Lk~~~~~~k~~L~~~l 97 (101) T 1jhg_A 36 LTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVL 97 (101) T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999999999999999999089579999999698657778989998848878999999987 No 104 >2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus} Probab=76.86 E-value=2.1 Score=21.24 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=28.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|++-|.... +++.. |+|..+||+.+|.|.+||.++++ T Consensus 29 ~LT~rE~evl--~ll~~-G~s~~eIA~~L~iS~~TV~~~~~ 66 (91) T 2rnj_A 29 MLTEREMEIL--LLIAK-GYSNQEIASASHITIKTVKTHVS 66 (91) T ss_dssp GCCSHHHHHH--HHHHT-TCCTTHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 1799999999--99992-89999999997889999999999 No 105 >3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A* Probab=76.83 E-value=2.1 Score=21.19 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|++-|.... +++.. |+|..+||+++|.|..||.++++ T Consensus 159 ~LT~RE~eVL--~ll~~-G~snkeIA~~L~iS~~TVk~h~~ 196 (225) T 3klo_A 159 KLTKREQQII--KLLGS-GASNIEIADKLFVSENTVKTHLH 196 (225) T ss_dssp TSCHHHHHHH--HHHTT-TCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 4222565430--35533-99799999997889999999999 No 106 >1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A Probab=76.51 E-value=1.7 Score=21.80 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=24.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH Q ss_conf 10467999974337877865656----543589999876 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRI----LKLPSSVREMIR 187 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrL----l~L~~~i~~~l~ 187 (300) +|..+||+..|.|.++||+.|.= ...+++..+.|. T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~~~~Vs~~Tr~rV~ 39 (65) T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVM 39 (65) T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHH T ss_conf 979999999885999999998599987877999999999 No 107 >1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12 Probab=75.88 E-value=2 Score=21.39 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=28.5 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565654 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..+|...-.+.| +.+| +..+.|+.+|.||+++.+.|+=.. T Consensus 18 ~~~~Ek~~I~~aL-~~~g-~~~~aA~~Lgisr~tL~rKlkkyg 58 (61) T 1g2h_A 18 IGFYEAQVLKLFY-AEYP-STRKLAQRLGVSHTAIANKLKQYG 58 (61) T ss_dssp CSHHHHHHHHHHH-HHSC-SHHHHHHHTTSCTHHHHHHHHTTT T ss_pred HHHHHHHHHHHHH-HHCC-CHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 9999999999999-9968-999999997978999999999967 No 108 >2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Probab=75.68 E-value=2 Score=21.39 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.8 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011104679999743378778656565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -+-.+..+ |++..++|++||.|+++|++.++-. T Consensus 33 rIv~l~~~-G~s~r~IArrl~VS~stV~kil~R~ 65 (159) T 2k27_A 33 RIVDLAHQ-GVRPCDISRQLRVSHGCVSKILGRY 65 (159) T ss_dssp HHHHHHHH-TCCHHHHHHHHTCCSHHHHHHHCCS T ss_pred HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999986-9999999998895999999999999 No 109 >1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A Probab=75.09 E-value=1.9 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=9.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) |+|..++|+.+|.|++||.++| T Consensus 158 g~s~~~Ia~~l~vs~sTv~R~l 179 (183) T 1gdt_A 158 GLGASHISKTMNIARSTVYKVI 179 (183) T ss_dssp TCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999999893999999998 No 110 >2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} Probab=75.07 E-value=3.1 Score=20.06 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=32.9 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 21048999999985210111046799997433787786565654358999987642101 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) .|+.+|... +..|.+..-.|..++|+.+|.|+++|.++++ .+..+|-|. T Consensus 6 ~LD~~D~~I-l~~L~~d~R~s~~eia~~lgls~~tv~~Ri~---------~L~~~gvI~ 54 (151) T 2dbb_A 6 KLDRVDMQL-VKILSENSRLTYRELADILNTTRQRIARRID---------KLKKLGIIR 54 (151) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHTTSCHHHHHHHHH---------HHHHHTSEE T ss_pred HHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCCC T ss_conf 761999999-9999885999999999998969999999999---------999679862 No 111 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A Probab=74.94 E-value=3.5 Score=19.76 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=32.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 21048999999985210111046799997433787786565654358999987642101 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) .|+.+|... +..|....-.+..+||+.+|.|+++|.++++ .+..+|-|. T Consensus 4 ~lD~~D~~I-l~~L~~n~R~s~~~ia~~~gls~~tv~~Ri~---------rL~~~GiI~ 52 (150) T 2w25_A 4 ALDDIDRIL-VRELAADGRATLSELATRAGLSVSAVQSRVR---------RLESRGVVQ 52 (150) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSEE T ss_pred HHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCCC T ss_conf 570999999-9999983899999999998929899999999---------998689831 No 112 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Probab=74.80 E-value=4.1 Score=19.35 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=33.5 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 654310221048999999985210111046799997433787786565 Q gi|254780805|r 127 VENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 127 ~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -..+.+.+|++.+ +..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 30 ~~~l~~~glt~~q-~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~ 76 (152) T 3bj6_A 30 ERGTLREGVTVGQ-RAILEGLSLTPGATAPQLGAALQMKRQYISRILQ 76 (152) T ss_dssp HHHHHHTTCCHHH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9887676979999-9999999987998999999998969879999999 No 113 >1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7 Probab=74.32 E-value=3.1 Score=20.10 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=37.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) ++|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+ T Consensus 15 ~~ldT~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rSQGtlSdLL~ 57 (101) T 1wh6_A 15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS 57 (101) T ss_dssp SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH T ss_conf 2157999999999999994986999999998208378999984 No 114 >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Probab=73.88 E-value=3 Score=20.24 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.5 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .....+..+||+.+|.|+++|+..|+.|. T Consensus 36 ~~~~~~v~el~~~l~~s~s~vS~HL~~L~ 64 (106) T 1r1u_A 36 SVSEASVGHISHQLNLSQSNVSHQLKLLK 64 (106) T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 82996799999987658658999999999 No 115 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=73.76 E-value=2.3 Score=20.88 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +-+|++.+ +..+..+....++|+.+||..+|.++++|++.+. T Consensus 32 ~~glt~~q-~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~ 73 (142) T 2bv6_A 32 KYNLTYPQ-FLVLTILWDESPVNVKKVVTELALDTGTVSPLLK 73 (142) T ss_dssp HHTCCHHH-HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 76979999-9999999977998999999998979879999999 No 116 >1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1 Probab=73.74 E-value=0.27 Score=26.97 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.5 Q ss_pred HHCCCCHHHHHHHHHHHHHHHH Q ss_conf 1011104679999743378778 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVA 170 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~ 170 (300) .+.|+||.+||+.+|-||+.|+ T Consensus 2 R~kG~tQ~eIA~~LgTSraNVs 23 (122) T 1nr3_A 2 RERGWSQKKIARELKTTRQNVS 23 (122) T ss_dssp CCCSCSSCSTHHHHHHCCSSSC T ss_pred CCCCCCHHHHHHHHCCCHHHHH T ss_conf 6257879999999777588999 No 117 >1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Probab=73.73 E-value=3.2 Score=20.01 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=24.9 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011104679999743378778656565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +-.+.+ .|++..++|++||.|+++|.+.+.-. T Consensus 41 IV~~~~-~G~s~r~IArrf~VS~stV~kii~r~ 72 (149) T 1k78_A 41 IVELAH-QGVRPCDISRQLRVSHGCVSKILGRY 72 (149) T ss_dssp HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999-69999999998894999999999999 No 118 >2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} Probab=73.51 E-value=3.7 Score=19.60 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=18.7 Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210--111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..+++|..+-+++.. .++|..+||+++|.+++++.++|+ T Consensus 10 v~sl~Ral~IL~~~~~~~~~~~~~eia~~~gl~~st~~RlL~ 51 (257) T 2g7u_A 10 IQSIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILL 51 (257) T ss_dssp CHHHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 469999999999998479998999999987939999999999 No 119 >3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis} Probab=73.40 E-value=3.3 Score=19.91 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=28.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|||-|.-. + +++.+ |+|-.+||+.+|.|..||.++++ T Consensus 148 ~~LT~RE~eV-L-~ll~~-G~snkeIA~~L~iS~~TVk~h~~ 186 (225) T 3c3w_A 148 SGLTDQERTL-L-GLLSE-GLTNKQIADRMFLAEKTVKNYVS 186 (225) T ss_dssp TTSCHHHHHH-H-HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHH-H-HHHHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 6799999999-9-99993-89888999997887999999999 No 120 >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A Probab=73.27 E-value=3.2 Score=20.01 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.0 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0111046799997433787786565654 Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ....+..+||+.+|.++++||+.|+.|. T Consensus 57 ~~~~~v~ela~~l~~s~stvS~HL~~L~ 84 (122) T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQLRSLR 84 (122) T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 2997699999998919888999999999 No 121 >1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7 Probab=73.12 E-value=3.4 Score=19.85 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=37.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) ++|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+ T Consensus 25 ~eLDT~~Ia~~v~~~L~~~~IsQ~~Fak~VL~rSQGtlSdLL~ 67 (111) T 1wh8_A 25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLS 67 (111) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH T ss_conf 5378999999999999985852999999998008478999983 No 122 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A* Probab=73.01 E-value=4.2 Score=19.27 Aligned_cols=121 Identities=16% Similarity=0.238 Sum_probs=61.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565654358999987642101677777640100468999974 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIV 213 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii 213 (300) .|+.+|... +..|.+..-.+..+||+.+|.|+++|.++++ .+...|.|.-.. +++ +..++ T Consensus 24 ~LD~~D~~I-L~~L~~d~R~s~~~iA~~lglS~~tV~~Ri~---------rL~~~GiI~~~~--~~v---d~~~l----- 83 (171) T 2e1c_A 24 PLDEIDKKI-IKILQNDGKAPLREISKITGLAESTIHERIR---------KLRESGVIKKFT--AII---DPEAL----- 83 (171) T ss_dssp CCCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSSCCCC--CCC---CGGGG----- T ss_pred CCCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCCEEEE--EEE---CHHHH----- T ss_conf 865999999-9999983899999999998919999999999---------998479905799--998---88996----- Q ss_pred HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE--CCCCCEEEEEEECCHHHHHHHHH Q ss_conf 2224778999999764102222223456655689789999999999739879997--17982289998589899999999 Q gi|254780805|r 214 SKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIK--HRNNKGQFCIKYETNEQLKIICS 291 (300) Q Consensus 214 ~~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~--~~~~kGkI~I~f~s~eeLe~Il~ 291 (300) ++++. .++ . -+ .......++...+...=+.. .+- ....---+.+.+.+.++++.+++ T Consensus 84 --g~~~~---a~v--------~-~~------~~~~~~~~~~~~l~~~p~V~-~~~~vtG~~dl~~~v~~~~~~~l~~~i~ 142 (171) T 2e1c_A 84 --GYSML---AFI--------L-VK------VKAGKYSEVASNLAKYPEIV-EVYETTGDYDMVVKIRTKNSEELNNFLD 142 (171) T ss_dssp --TCCEE---EEE--------E-EE------ECTTCHHHHHHHHHTSTTEE-EEEECSSSSSEEEEEEESSHHHHHHHHH T ss_pred --CCCCE---EEE--------E-EE------ECCCCHHHHHHHHHCCCCEE-EEEEECCCCCEEEEEEECCHHHHHHHHH T ss_conf --99628---999--------9-87------44540589999997599878-9999417887899999899999999999 Q ss_pred HHCC Q ss_conf 8375 Q gi|254780805|r 292 LLGE 295 (300) Q Consensus 292 kL~~ 295 (300) .|.. T Consensus 143 ~l~~ 146 (171) T 2e1c_A 143 LIGS 146 (171) T ss_dssp HHHH T ss_pred HHHC T ss_conf 9836 No 123 >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} Probab=72.80 E-value=2.6 Score=20.56 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=28.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9985210111046799997433787786565654358999987642101 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) ++.|......|..+||+.+|.|+++|.++++ .+..+|-|. T Consensus 9 L~~L~~d~R~s~~eiA~~lglS~~tv~~Ri~---------rL~~~GvI~ 48 (162) T 3i4p_A 9 LRILQEDSTLAVADLAKKVGLSTTPCWRRIQ---------KMEEDGVIR 48 (162) T ss_dssp HHHHTTCSCSCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSSC T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE T ss_conf 9999984899999999998929999999999---------998479823 No 124 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=72.33 E-value=4.7 Score=18.98 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=32.0 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..-+|++- ++..+..+....+.++.+||+.+|.++++|++.+. T Consensus 41 ~~~gLt~~-q~~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~ 83 (153) T 2pex_A 41 KALDLTYP-QYLVMLVLWETDERSVSEIGERLYLDSATLTPLLK 83 (153) T ss_dssp TTTTCCHH-HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 77697999-99999999847998999999998968868999999 No 125 >1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 Probab=71.91 E-value=4.3 Score=19.17 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210-11-1046799997433787786565654 Q gi|254780805|r 139 EEALGYEQLISE-YG-YTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~-~~-~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |+-..+-.++.. -+ +|..+||+.+|.|+.||.+.|..|. T Consensus 21 eR~~~Il~~L~~~~~~vs~~eLa~~l~vS~~TIrrdi~~L~ 61 (187) T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLR 61 (187) T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999859967699999997989999999999999 No 126 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=71.60 E-value=3.3 Score=19.89 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=30.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|++.+ ...+..+....+.|+.+||+.+|.++++|++.+. T Consensus 40 ~~ls~~q-~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~ 80 (154) T 2eth_A 40 SDMKTTE-LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVD 80 (154) T ss_dssp HHSBHHH-HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH T ss_pred CCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 6999999-9999999986994999999998979889999999 No 127 >2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} Probab=71.53 E-value=2.7 Score=20.48 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=26.8 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..|.+ ...+..+|++.+|.|+++|+.+|+.|. T Consensus 27 l~~L~~-~~~~v~ela~~lgis~stvS~HL~~L~ 59 (118) T 2jsc_A 27 LVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR 59 (118) T ss_dssp HHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT T ss_pred HHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999981-992899999998929999999999999 No 128 >2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A Probab=71.39 E-value=4.5 Score=19.09 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.1 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||....+...++ .+.|...+.+||++-++.|..+ T Consensus 22 RPvk~~dl~~Kvk~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAvelLDrs 70 (94) T 2jrh_A 22 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS 70 (94) T ss_dssp SSCCHHHHHHHHHHHHCSSEEEEEECS--SCEEECCSHHHHHHHHHHHHHS T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC--EEEEECCCHHHHHHHHHHHHCC T ss_conf 984399999999998688154787377--5888636778899999987059 No 129 >2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Probab=71.31 E-value=3 Score=20.21 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.5 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0111046799997433787786565654 Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ....+..+||+.+|.|+++|+..|+.|. T Consensus 32 ~~~~~v~eLa~~l~is~s~vS~HL~~L~ 59 (114) T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNALQ 59 (114) T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 1992899999888889889999999999 No 130 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=70.84 E-value=5 Score=18.76 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|++. ++..+..+...-+.|+.+||+.+|.++++|++.++ T Consensus 30 ~~lt~~-q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~ 70 (138) T 1jgs_A 30 LDITAA-QFKVLCSIRCAACITPVELKKVLSVDLGALTRMLD 70 (138) T ss_dssp TTSCHH-HHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 596999-99999999877998999999998978879999999 No 131 >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ... Probab=70.81 E-value=4 Score=19.42 Aligned_cols=21 Identities=52% Similarity=0.757 Sum_probs=11.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) +||++||..+|.|+.+|++.| T Consensus 218 lt~~~LA~~lG~sr~tvsR~l 238 (260) T 3kcc_A 218 ITRQEIGQIVGCSRETVGRIL 238 (260) T ss_dssp CCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 899999999799899999999 No 132 >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* Probab=70.81 E-value=3.1 Score=20.06 Aligned_cols=29 Identities=10% Similarity=0.216 Sum_probs=23.1 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|.+....|..+||+++|.|+++|.++++ T Consensus 11 ~L~~d~R~s~~eia~~lg~s~~tv~~Ri~ 39 (150) T 2pn6_A 11 ILQYNAKYSLDEIAREIRIPKATLSYRIK 39 (150) T ss_dssp HHTTCTTSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99984899999999998939999999999 No 133 >1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A Probab=70.76 E-value=3.7 Score=19.62 Aligned_cols=39 Identities=15% Similarity=0.024 Sum_probs=26.6 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-+...-. +.-..|+|.+++|+.+|.|.++|.++++ T Consensus 140 ~L~~~~r~ii~--l~y~~g~s~~eIA~~lg~s~~tV~~~l~ 178 (194) T 1or7_A 140 SLPEDLRMAIT--LRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194) T ss_dssp HSCHHHHHHHH--HHHTTCCCHHHHHHHTTSCHHHHHHHHH T ss_pred CCCHHHHHHHH--HHHHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 09999999999--9998398999999998939999999999 No 134 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=70.57 E-value=5.1 Score=18.72 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=31.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2104899999998521011104679999743378778656565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +|++-+ +..+..+....+.++.+||+.+|.++++|++.++-| T Consensus 42 ~LT~~q-~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~L 83 (168) T 2nyx_A 42 NITIPQ-FRTLVILSNHGPINLATLATLLGVQPSATGRMVDRL 83 (168) T ss_dssp SCCHHH-HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 989999-999999996799699999999896988999999998 No 135 >2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5} Probab=70.27 E-value=2.9 Score=20.32 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=23.6 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+.++| ||.+.|+.||..++.|+..|| T Consensus 8 dyv~~~G-~Q~k~A~~lGV~Q~AIsKAlr 35 (67) T 2pij_A 8 KYLEEHG-TQSALAAALGVNQSAISQMVR 35 (67) T ss_dssp HHHHHTC-CHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHC-CHHHHHHHHCCCHHHHHHHHH T ss_conf 9999838-588999991975899999997 No 136 >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Probab=70.24 E-value=3.9 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=23.9 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0111046799997433787786565654 Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ....+..+|++.+|.|+++|++.|+.|. T Consensus 36 ~~~~~v~eLa~~l~is~s~vS~HL~~L~ 63 (108) T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALK 63 (108) T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 0995799999998909888999999999 No 137 >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Probab=69.81 E-value=5.3 Score=18.62 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=31.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++ .++..+..+-..-+.|+.+||+.+|.++++|++.+. T Consensus 36 ~glt~-~q~~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~ 76 (148) T 3nrv_A 36 FGIGM-TEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148) T ss_dssp GTCCH-HHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCH-HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 49899-999999999977997999999998969989999999 No 138 >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Probab=69.73 E-value=3.5 Score=19.79 Aligned_cols=12 Identities=17% Similarity=0.136 Sum_probs=4.7 Q ss_pred HHHHHHHHHHHC Q ss_conf 999999852101 Q gi|254780805|r 140 EALGYEQLISEY 151 (300) Q Consensus 140 ~A~~~~~l~~~~ 151 (300) ...+|...+.++ T Consensus 224 R~~gf~~~~~~~ 235 (366) T 3h5t_A 224 RVRGAMEVFIEA 235 (366) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHC T ss_conf 668999999983 No 139 >2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2 Probab=69.67 E-value=4.9 Score=18.81 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=41.8 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 89789999999999739879997179822899985898999999998375 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) ....+.++..+....||-...+...++ .+.|...+.+||++-++.|+. T Consensus 26 RPvk~~dl~~Kvk~afGq~ldl~y~Nn--EL~IPL~~Q~DLDkAvellDr 73 (103) T 2cu1_A 26 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDR 73 (103) T ss_dssp SSCCHHHHHHHHHHHHSSCEEEEECSS--SSCEECCSHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC--EEEEECCCHHHHHHHHHHHCC T ss_conf 873399999999998688153566367--378863667889999998705 No 140 >2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} Probab=69.66 E-value=3.2 Score=20.02 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=22.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.. |+|..++|+.+|.|..||.+++. T Consensus 8 ~ll~~-G~s~~eIA~~l~iS~~TV~~h~~ 35 (61) T 2jpc_A 8 KLIDE-GYTNHGISEKLHISIKTVETHRM 35 (61) T ss_dssp HHHHT-SCCSHHHHHHTCSCHHHHHHHHH T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99982-79999999896989999999999 No 141 >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} Probab=69.59 E-value=2.3 Score=20.90 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=25.7 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.+..++..+||+.+|.++++|++.|+.|. T Consensus 66 ~L~~g~~tv~eLa~~l~is~stvS~HL~~L~ 96 (151) T 3f6v_A 66 LLTSGEQTVNNLAAHFPASRSAISQHLRVLT 96 (151) T ss_dssp HGGGCCEEHHHHHTTSSSCHHHHHHHHHHHH T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9980993899999998919999999999899 No 142 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=69.00 E-value=5.5 Score=18.51 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=29.3 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|++. ++..+..+....+.|+.+||+.+|.++++|++.+. T Consensus 30 gLt~~-q~~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~ 69 (145) T 2a61_A 30 GITPA-QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVK 69 (145) T ss_dssp TCCHH-HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 97999-99999999877998999999998979878999999 No 143 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A Probab=68.98 E-value=3.6 Score=19.66 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=31.7 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 1048999999985210111046799997433787786565654358999987642101 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) |+.+|... ++.|....-.|..+||+++|.|+++|.++++ .+-.+|-|. T Consensus 8 LD~~D~~I-l~~L~~d~R~s~~eiA~~~gls~~tv~~Ri~---------rLe~~GiI~ 55 (162) T 2p5v_A 8 LDKTDIKI-LQVLQENGRLTNVELSERVALSPSPCLRRLK---------QLEDAGIVR 55 (162) T ss_dssp CCHHHHHH-HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSEE T ss_pred CCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEE T ss_conf 08999999-9999983799999999998929999999999---------998579326 No 144 >3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} Probab=68.86 E-value=5 Score=18.76 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 467999974337877865 Q gi|254780805|r 155 QNDIGSIVGKSRSHVANI 172 (300) Q Consensus 155 ~~~lA~~~G~s~s~V~~~ 172 (300) ..+||+.+|.||.||.+. T Consensus 36 E~eLa~~~~VSr~TvR~A 53 (236) T 3edp_A 36 ETALQEIYSSSRTTIRRA 53 (236) T ss_dssp HHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHH T ss_conf 999999979599999999 No 145 >3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} Probab=68.77 E-value=5.6 Score=18.48 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=15.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656565 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +..+||+.+|.||.+|...|+.| T Consensus 55 sereLA~~~gVSR~TVR~Al~~L 77 (272) T 3eet_A 55 SQARIREEYGVSDTVALEARKVL 77 (272) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 89999999894999999999999 No 146 >2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B Probab=68.46 E-value=4.5 Score=19.08 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.3 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||....+...++ .+.|...+.+||++-++.|..+ T Consensus 49 RPvk~~dl~~Kvk~afGq~ldl~y~Nn--El~IPL~~Q~DLDkAVelLDrs 97 (111) T 2c60_A 49 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS 97 (111) T ss_dssp SSCCHHHHHHHHHHHHSSCCEEEEECS--SCEEECCSHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC--EEEEECCCHHHHHHHHHHHHCC T ss_conf 984389999999998688142677367--2788536788899999987059 No 147 >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} Probab=68.39 E-value=5 Score=18.75 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=15.8 Q ss_pred CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 048999999985210--11104679999743378778656 Q gi|254780805|r 136 NPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 136 ~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++|..+-+++.. .+++..+||+.+|.+++++.++| T Consensus 18 ~sl~Ral~ILe~la~~~~~lsl~eia~~l~l~kst~~RlL 57 (265) T 2ia2_A 18 QSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFL 57 (265) T ss_dssp HHHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 5999999999999737999799999999794999999999 No 148 >3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228} Probab=68.23 E-value=5.4 Score=18.54 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=37.8 Q ss_pred CCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH Q ss_conf 2210489999999852---1011104679999743378778656565435--89999876 Q gi|254780805|r 133 KDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMIR 187 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l~ 187 (300) .+|++.|+-.+-.-+- +-..+|..+||+..|.|.++|.|..+-+... .+.+..+. T Consensus 13 ~~ls~se~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf~kklGf~gf~dfk~~l~ 72 (107) T 3iwf_A 13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107) T ss_dssp GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 663999999999999599999776599999897989989999999958898999999999 No 149 >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D Probab=68.23 E-value=5.7 Score=18.41 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=23.8 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011-10467999974337877865656 Q gi|254780805|r 143 GYEQLISEYG-YTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 143 ~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ++..|.++.| .+..+||+.+|.|+++|+..++- T Consensus 12 ~I~~l~~~~~~v~~~dlA~~L~vs~~sv~~~lk~ 45 (142) T 1on2_A 12 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142) T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999985379886999999969887899999999 No 150 >1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2 Probab=68.11 E-value=3.3 Score=19.91 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.3 Q ss_pred CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985--2101110467999974337877865 Q gi|254780805|r 133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~ 172 (300) +.|+|-|.-.--.+. -+...+|.++||+.+|.|+..|+.. T Consensus 17 ~~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~lgiSreRVRQi 58 (87) T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQI 58 (87) T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHH T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 649999999999980788999657999998959889999999 No 151 >3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A Probab=68.09 E-value=5.7 Score=18.39 Aligned_cols=94 Identities=34% Similarity=0.443 Sum_probs=46.1 Q ss_pred CCCCCEEECC---------C----CCCCCCCCCHHHHHH-HHHHHCC--CCCCCC-CCC--CCHHHHHHHHHHHHHCCCC Q ss_conf 0155046205---------6----544533357567777-7642100--135433-346--4112345566654310221 Q gi|254780805|r 75 IIQPLIVRAI---------D----NGLYKIIAGERRFRA-AKMASLS--EVPVII-RNV--DNKSSLEIAIVENVQRKDL 135 (300) Q Consensus 75 ~lqPi~Vr~~---------~----~g~y~ii~G~rR~rA-a~~~g~~--~ip~iv-~~~--~d~~~~~~~l~EN~~R~dl 135 (300) -.|.++||-. . +.+|-|+. .|-||| ++.+.+. .+|++- +.+ ++-+-..-.+.-...|-|| T Consensus 76 ryqnvivrgvnfdervqrlstggsparyaivy-rrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdl 154 (380) T 3m6z_A 76 RYQNVIVRGVNFDERVQRLSTGGSPARYAIVY-RRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDL 154 (380) T ss_dssp SEEEEEETTEEHHHHHHHSTTCCCHHHHHHTS-TTHHHHHHHHTTCCSSSSCCCCCCCCTTCSSCHHHHHHHHHTTCTTT T ss_pred HHHHEEEECCCHHHHHHHHCCCCCCCEEEEEE-HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHHHHHHHCCCCE T ss_conf 35410223256799899740589864057553-35489999870888023852032101148873899999999655230 Q ss_pred CH-------HHHHHHHHHHHHH------------------CCCC-HHHHHHHHHHHHHHH Q ss_conf 04-------8999999985210------------------1110-467999974337877 Q gi|254780805|r 136 NP-------LEEALGYEQLISE------------------YGYT-QNDIGSIVGKSRSHV 169 (300) Q Consensus 136 ~p-------~e~A~~~~~l~~~------------------~~~t-~~~lA~~~G~s~s~V 169 (300) .| -|.|--|.+|++. .-|| ++++|.++|.|-|.| T Consensus 155 mpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsev 214 (380) T 3m6z_A 155 MPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEV 214 (380) T ss_dssp SCSSGGGCCGGGTTTHHHHHHHTTCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHH T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHH T ss_conf 340005489555017999999707997737899999996089997289999848853231 No 152 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=68.06 E-value=5.7 Score=18.43 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=33.1 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..-+|++- ++..+..+....+.|+.+||+.+|.++++|++.+. T Consensus 33 l~~~glt~~-q~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~ 76 (147) T 1z91_A 33 LDKLNITYP-QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 76 (147) T ss_dssp HTTTCCCHH-HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH T ss_pred HHHCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 988698999-99999999977994999999997978878999999 No 153 >3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A Probab=67.43 E-value=5.8 Score=18.34 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=24.6 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565654 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +|+.+ |.++.+||+.+|.|-+||++-=|-++ T Consensus 53 ~lL~~-g~syreIa~~~gvS~aTIsRv~r~L~ 83 (107) T 3frw_A 53 KMLTD-KRTYLDISEKTGASTATISRVNRSLN 83 (107) T ss_dssp HHHHT-TCCHHHHHHHHCCCHHHHHHHHHHHH T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99886-99999999996987475899999988 No 154 >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} Probab=67.42 E-value=5.9 Score=18.31 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=20.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..++|+.+|.|+++|.+.|+.|. T Consensus 37 ser~La~~~~vSr~tVr~Al~~L~ 60 (126) T 3by6_A 37 SVRETALQEKINPNTVAKAYKELE 60 (126) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 499999997989899999999999 No 155 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=67.10 E-value=2.3 Score=20.99 Aligned_cols=18 Identities=11% Similarity=-0.058 Sum_probs=9.4 Q ss_pred CCHHHHHHHHHHHHHCCC Q ss_conf 898899999998863100 Q gi|254780805|r 58 FESEGLEDLCQSIKSHGI 75 (300) Q Consensus 58 ~~~~~l~eLa~SI~~~G~ 75 (300) |..+-+..+......+|. T Consensus 74 ~~~~~~~~~~~~~~~~g~ 91 (332) T 2hsg_A 74 FYAELARGIEDIATMYKY 91 (332) T ss_dssp HHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 014678899999876312 No 156 >2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2 Probab=66.92 E-value=6 Score=18.24 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=41.9 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 89789999999999739879997179822899985898999999998375 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) .+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|.. T Consensus 38 RPvk~~dl~~Kv~~afGq~ldl~y~Nn--EL~IPl~~Q~DLDkAvellDr 85 (100) T 2npt_B 38 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDR 85 (100) T ss_dssp SSCCHHHHHHHHHHHHTSCEEEEEEET--TEEEECCCHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECC--EEEEECCCHHHHHHHHHHHHC T ss_conf 873389999999998588154677367--378863567889999998715 No 157 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=66.74 E-value=6.1 Score=18.22 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=29.1 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++.+- ..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 38 ~~lt~~q~-~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~ 78 (150) T 2rdp_A 38 YPITPPQF-VALQWLLEEGDLTVGELSNKMYLACSTTTDLVD 78 (150) T ss_dssp SSSCHHHH-HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 79799999-999999977995999999998968878999999 No 158 >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 Probab=66.62 E-value=6.1 Score=18.21 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ..+|+.+||+.+|.|++++++.++-| T Consensus 26 ~~ls~~eLa~~l~is~~tvsr~l~~L 51 (230) T 3cta_A 26 AYLTSSKLADMLGISQQSASRIIIDL 51 (230) T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 98589999999887888999999999 No 159 >3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus} Probab=66.61 E-value=6.1 Score=18.22 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=25.5 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011104679999743378778656565435 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) +|+.+ |.|+.+||+.+|.|-+||++-=|-++-. T Consensus 70 ~lL~~-g~syreIa~~tgvS~aTIsRV~r~L~~g 102 (119) T 3kor_A 70 KMIKQ-GYTYATIEQESGASTATISRVKRSLQWG 102 (119) T ss_dssp HHHHH-TCCHHHHHHHHCCCHHHHHHHHHHHHSS T ss_pred HHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHCC T ss_conf 99885-9999999999698745479999998759 No 160 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=66.51 E-value=5.3 Score=18.61 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=29.0 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04899999998521011104679999743378778656565 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +|.... .+..|...-.+|..+||+.+|.+++++++.++-| T Consensus 15 ~p~r~~-IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~L 54 (100) T 1ub9_A 15 NPVRLG-IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVL 54 (100) T ss_dssp SHHHHH-HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHH T ss_pred CHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999-9999851899839999999891998999999999 No 161 >3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2 Probab=66.41 E-value=5.9 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=18.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..+||+.+|.||.||.+.|.+|. T Consensus 31 sE~~La~~~~VSR~TvR~Al~~L~ 54 (239) T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLE 54 (239) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 699999998959999999999999 No 162 >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A Probab=65.91 E-value=5.7 Score=18.39 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=18.3 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1011104679999743378778656565 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .....|..+||+.+|.|+++|+.+|+.| T Consensus 30 ~~~~~t~~ela~~l~~s~~~v~~HL~~L 57 (192) T 1uly_A 30 RNKEMTISQLSEILGKTPQTIYHHIEKL 57 (192) T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 8299679999999891988999999999 No 163 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 Probab=65.80 E-value=4 Score=19.41 Aligned_cols=110 Identities=17% Similarity=0.147 Sum_probs=54.3 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 52101110467999974337877865656543589999876421016777776401004689999742224778999999 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELV 226 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lV 226 (300) |......+..+||+.+|.|+++|.++++ .+..+|-|.--++ .+ ++.++ ++++.. ++ T Consensus 13 L~~d~r~s~~~ia~~~gls~~tv~~Ri~---------rL~~~GvI~~~~~--~i---d~~~l-------g~~~~a---~v 68 (141) T 1i1g_A 13 LEKDARTPFTEIAKKLGISETAVRKRVK---------ALEEKGIIEGYTI--KI---NPKKL-------GYSLVT---IT 68 (141) T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHH---------HHHHHTSSCCCCC--CC---CSGGG-------TCCEEE---EE T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHH---------HHCCCCEEEEEEE--EE---CHHHH-------CCCEEE---EC T ss_conf 9984898999999998929999999999---------9733985999999--99---87991-------970552---00 Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEC-CC-CCEEEEEEECCHHHHHHHH-HHHCCC Q ss_conf 7641022222234566556897899999999997398799971-79-8228999858989999999-983756 Q gi|254780805|r 227 QEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKH-RN-NKGQFCIKYETNEQLKIIC-SLLGEN 296 (300) Q Consensus 227 k~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~~-~~-~kGkI~I~f~s~eeLe~Il-~kL~~~ 296 (300) .-........++.+.|.+.=+.. .+.. .+ ----+.+.+.+.++|+.++ ++|..- T Consensus 69 ---------------~i~~~~~~~~~v~~~l~~~p~V~-~v~~vtG~~Dl~~~v~~~~~~~l~~~i~~~l~~~ 125 (141) T 1i1g_A 69 ---------------GVDTKPEKLFEVAEKLKEYDFVK-ELYLSSGDHMIMAVIWAKDGEDLAEIISNKIGKI 125 (141) T ss_dssp ---------------EEEECGGGHHHHHHHHHHSTTEE-EECCCSSSSSEEEEEEESSHHHHHHHHHHTTTTS T ss_pred ---------------CCCCCCCHHHHHHHHHHCCCCEE-EEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCC T ss_conf ---------------12457404999999972798199-9999956788999999899999999999997359 No 164 >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Probab=65.50 E-value=2.8 Score=20.42 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=24.6 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+..++..+||+.+|.|+++|++.|+.|. T Consensus 28 ~~~~~~v~ela~~l~~s~~tvS~HL~~L~ 56 (118) T 3f6o_A 28 SRGPATVSELAKPFDMALPSFMKHIHFLE 56 (118) T ss_dssp HTCCEEHHHHHTTCCSCHHHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 80994799999998919999999999999 No 165 >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 Probab=65.46 E-value=6.4 Score=18.06 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHHCCCCCC Q ss_conf 98899999998863100155 Q gi|254780805|r 59 ESEGLEDLCQSIKSHGIIQP 78 (300) Q Consensus 59 ~~~~l~eLa~SI~~~G~lqP 78 (300) +...+..=-..+...|++.. T Consensus 41 s~~~v~~HL~~L~~~Glv~~ 60 (202) T 2p4w_A 41 GQKAVLEHLRILEEAGLIES 60 (202) T ss_dssp CHHHHHHHHHHHHHTTSEEE T ss_pred CHHHHHHHHHHHHHCCCEEE T ss_conf 99899999999997895179 No 166 >2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 Probab=65.37 E-value=6.1 Score=18.23 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=26.8 Q ss_pred CCCHHHHHHHHHHH-H-HHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985-2-1011104679999743378778656 Q gi|254780805|r 134 DLNPLEEALGYEQL-I-SEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 134 dl~p~e~A~~~~~l-~-~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .|+|-|...--.+. + +...+|..++|+.+|.|+..|++.- T Consensus 5 ~L~~rEr~Ii~~ryGl~~~~~~tl~eia~~lgvS~erVrqie 46 (68) T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 46 (68) T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 499999999999838999997789999999896999999999 No 167 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=65.31 E-value=6.5 Score=18.05 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=30.8 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...-+|++.+ +..+..|....+.|+.+||+++|.++++|++.+. T Consensus 34 ~~~~glt~~q-~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~ 77 (154) T 2qww_A 34 AASLGLTIQQ-LAMINVIYSTPGISVADLTKRLIITGSSAAANVD 77 (154) T ss_dssp HHHHTCCHHH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9876989999-9999999977998999999997978757999999 No 168 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A Probab=64.79 E-value=6.6 Score=17.98 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=30.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-+|++.+- ..+..+.+..+.|+.+||+.+|.++++|++.+. T Consensus 32 ~~~lt~~q~-~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~ 73 (142) T 3ech_A 32 RLDLTPPDV-HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIR 73 (142) T ss_dssp TCCCCHHHH-HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHH T ss_pred CCCCCHHHH-HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 689799999-999999977998999999998969879999999 No 169 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=64.69 E-value=6.7 Score=17.97 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=28.3 Q ss_pred CCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852101-11046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|+ ..++..+..+.... .+|+.+||+.+|.++++|++.++ T Consensus 31 ~~ls-~~q~~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~ 72 (147) T 2hr3_A 31 DPVQ-FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLR 72 (147) T ss_dssp CHHH-HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 5989-99999999999769998999999998979879999999 No 170 >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 Probab=64.61 E-value=5 Score=18.80 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=27.4 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 85210111046799997433787786565654358999987642101 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) .|....-.+..+||+.+|.|+++|.+++ +.+...|-|. T Consensus 13 ~L~~n~R~s~~eiA~~~g~s~~tv~~Ri---------~rL~~~GiI~ 50 (144) T 2cfx_A 13 ELKKDSRLSMRELGRKIKLSPPSVTERV---------RQLESFGIIK 50 (144) T ss_dssp HHHHCSCCCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSEE T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCEE T ss_conf 9998389999999999892989999999---------9998589846 No 171 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=64.44 E-value=2.3 Score=20.94 Aligned_cols=14 Identities=14% Similarity=0.506 Sum_probs=5.8 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999998521011 Q gi|254780805|r 139 EEALGYEQLISEYG 152 (300) Q Consensus 139 e~A~~~~~l~~~~~ 152 (300) +...+|++.+.++| T Consensus 203 ~R~~gf~~~~~~~~ 216 (344) T 3kjx_A 203 KRFEGFTEVLGKNG 216 (344) T ss_dssp HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHCC T ss_conf 89999999999729 No 172 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=64.41 E-value=6.7 Score=17.94 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=29.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++- ++..+..+-..-+.|+.+||+.+|.++++|++.+. T Consensus 32 ~glt~~-q~~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 72 (140) T 3hsr_A 32 YDLTYT-GYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLK 72 (140) T ss_dssp GTCCHH-HHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 599999-99999999867998999999998978647999999 No 173 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=64.25 E-value=5 Score=18.77 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=32.3 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+.+|++.+ +..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 26 ~~~~~lt~~q-~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~ 69 (139) T 3bja_A 26 IEQYDISYVQ-FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQ 69 (139) T ss_dssp TGGGTCCHHH-HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH T ss_conf 8786989999-9999999986998999998470868889999999 No 174 >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Probab=63.69 E-value=6.4 Score=18.10 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=24.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 104679999743378778656565435899998764210167 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) +|+++||..+|.||.+|++.|+ ++-.+|.|..+ T Consensus 178 lt~~~LA~~lgisr~tvsR~l~---------~L~~~giI~~~ 210 (250) T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLA---------SLKRENILDKK 210 (250) T ss_dssp CCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEEC T ss_pred CCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC T ss_conf 6899999897999999999999---------99988989964 No 175 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=63.63 E-value=7 Score=17.85 Aligned_cols=42 Identities=7% Similarity=0.032 Sum_probs=31.4 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+|++- ++..+..+.+.-+.|+.+||+.++.++++|++.+. T Consensus 41 ~~glt~~-q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~ 82 (162) T 3k0l_A 41 ALEISLP-QFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQ 82 (162) T ss_dssp TTTCCHH-HHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHH T ss_pred HCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7597999-99999999977998999999998968869999999 No 176 >2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix- hairpin-helix, HHH motif, three helix bundle; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A Probab=63.58 E-value=7 Score=17.84 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHH Q ss_conf 467999974337 Q gi|254780805|r 155 QNDIGSIVGKSR 166 (300) Q Consensus 155 ~~~lA~~~G~s~ 166 (300) ++++|.++|.|- T Consensus 200 hdeiarrlglsv 211 (519) T 2csb_A 200 HDEIARRLGLSV 211 (519) T ss_dssp HHHHHHHHTCCH T ss_pred HHHHHHHHCCCH T ss_conf 289999848853 No 177 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 Probab=63.37 E-value=4.7 Score=18.95 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=58.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 10489999999852101110467999974337877865656543589999876421016777776401004689999742 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVS 214 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~ 214 (300) |+.+|... ++.|....-.|..+||+.+|.|+++|++++ +.+..+|-|...++ .+ +...+ T Consensus 6 lD~~D~~I-l~~L~~d~R~s~~~ia~~lg~s~~tv~~Ri---------~rL~~~GiI~~~~~--~v---d~~~l------ 64 (152) T 2cg4_A 6 IDNLDRGI-LEALMGNARTAYAELAKQFGVSPETIHVRV---------EKMKQAGIITGARI--DV---SPKQL------ 64 (152) T ss_dssp CCHHHHHH-HHHHHHCTTSCHHHHHHHHTSCHHHHHHHH---------HHHHHHTSEEEEEE--EE---CTTTT------ T ss_pred CCHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCCCCEEE--EE---CHHHH------ T ss_conf 68999999-999998489999999999891999999999---------99973686100589--97---24670------ Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCC-CEEEEEEECCHHHHHHHH-HH Q ss_conf 2247789999997641022222234566556897899999999997398799971798-228999858989999999-98 Q gi|254780805|r 215 KKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNN-KGQFCIKYETNEQLKIIC-SL 292 (300) Q Consensus 215 ~~LSVRe~E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~~~~~-kGkI~I~f~s~eeLe~Il-~k 292 (300) ++.+. ..+ .-.. ....++..+...+...-+...-..-.+. ---+.+.+.+.++++.++ ++ T Consensus 65 -G~~~~---a~i----~v~~----------~~~~~~~~~~~~l~~~~~V~~~~~vtG~~dl~~~v~~~~~~~l~~~~~~~ 126 (152) T 2cg4_A 65 -GYDVG---CFI----GIIL----------KSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLINK 126 (152) T ss_dssp -TCCEE---EEE----EEEE----------SSGGGHHHHHHHHHTCTTEEEEEEESSSCSEEEEEEESCHHHHHHHHHHT T ss_pred -CCCCC---CCE----EEEE----------CCHHHHHHHHHHHHCCCHHEEEEECCCCCCEEEEEEECCHHHHHHHHHHH T ss_conf -76311---010----0110----------33023999999986183431677605897699999989999999999998 Q ss_pred HCCC Q ss_conf 3756 Q gi|254780805|r 293 LGEN 296 (300) Q Consensus 293 L~~~ 296 (300) +..- T Consensus 127 i~~~ 130 (152) T 2cg4_A 127 IQTI 130 (152) T ss_dssp TTTS T ss_pred HHCC T ss_conf 5269 No 178 >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} Probab=63.34 E-value=7.1 Score=17.81 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=38.2 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHH--CCCCHHHHHHHHHHHHHHHHH Q ss_conf 6777776421001354333464112345566654310221048999999--985210--111046799997433787786 Q gi|254780805|r 96 RRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGY--EQLISE--YGYTQNDIGSIVGKSRSHVAN 171 (300) Q Consensus 96 rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~--~~l~~~--~~~t~~~lA~~~G~s~s~V~~ 171 (300) .++...-..|...||-.+ ..+.++-+|++-|-..-. .+..++ .-.|.+.||+++|.|+.+|.+ T Consensus 4 ~~l~~~l~~G~~~ipn~L-------------l~~y~~lgLs~~e~~vll~l~~~~~~~~~~PS~~~La~~~g~s~~~v~~ 70 (128) T 2vn2_A 4 KKVAEWLAQGSIAVPKLL-------------LGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECME 70 (128) T ss_dssp HHHHHHHHTCEEEEEHHH-------------HTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHH T ss_pred HHHHHHHHCCCEECCHHH-------------HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHH T ss_conf 899999988995216999-------------9989883989999999999999987599999999999895949999999 Q ss_pred HHH Q ss_conf 565 Q gi|254780805|r 172 ILR 174 (300) Q Consensus 172 ~Lr 174 (300) .+. T Consensus 71 ~l~ 73 (128) T 2vn2_A 71 MVR 73 (128) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 179 >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A Probab=63.32 E-value=7.1 Score=17.81 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..++|+.+|.||++|.+.|+.|. T Consensus 30 se~~La~~~gVSr~tVR~Al~~L~ 53 (129) T 2ek5_A 30 STNELAAFHRINPATARNGLTLLV 53 (129) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899999892999999999999999 No 180 >3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} Probab=63.31 E-value=5.1 Score=18.73 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=25.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 99999852101110467999974337877865 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~ 172 (300) +..+++...+-|+|++++|++++.+.+++... T Consensus 5 G~~Lr~~R~~~glSi~eva~~l~I~~~~l~ai 36 (130) T 3fym_A 5 GEALKGRRERLGMTLTELEQRTGIKREMLVHI 36 (130) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH T ss_conf 99999999996999999999975149999999 No 181 >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} Probab=63.21 E-value=6.2 Score=18.19 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=17.1 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCC Q ss_conf 898899999998863100155046205654453335 Q gi|254780805|r 58 FESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIA 93 (300) Q Consensus 58 ~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~ 93 (300) ++...+.-|..++.+.|.++ ..++|+|.+=. T Consensus 50 l~~sT~~RlL~tL~~~G~l~-----~~~~g~Y~lG~ 80 (260) T 2o0y_A 50 LPKTTVVRLVATMCARSVLT-----SRADGSYSLGP 80 (260) T ss_dssp CCHHHHHHHHHHHHHTTSEE-----ECTTSCEEECH T ss_pred CCHHHHHHHHHHHHHCCEEE-----EECCCCEECCH T ss_conf 19999999999999788789-----80554265378 No 182 >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Probab=63.00 E-value=6.6 Score=18.00 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=14.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|+++||..+|.++.+|++.|+ T Consensus 194 lt~~~LA~~lGisr~tvsR~L~ 215 (243) T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLG 215 (243) T ss_dssp CCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHH T ss_conf 2599998887999999999999 No 183 >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5 Probab=62.96 E-value=6.6 Score=17.99 Aligned_cols=30 Identities=17% Similarity=0.426 Sum_probs=24.5 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.+ +.+..+||+.+|.|+++|+..|+.|. T Consensus 39 ~L~~-~~~~~eLa~~lg~s~stvs~HL~~L~ 68 (96) T 1y0u_A 39 MLDK-GRSEEEIMQTLSLSKKQLDYHLKVLE 68 (96) T ss_dssp HHHT-TCCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHCC-CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 8357-99799999998919989999999999 No 184 >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Probab=62.94 E-value=3.8 Score=19.56 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+||++||..+|.||.+|++.|+ T Consensus 163 ~lt~~~lA~~lg~sr~tvsr~l~ 185 (222) T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALN 185 (222) T ss_dssp CCCHHHHHHHHCSCHHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHHH T ss_conf 84699999997998999999999 No 185 >2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19 Probab=62.77 E-value=7.2 Score=17.75 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=27.8 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4899999998521011104679999743378778656565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +=-+..+.+.....-|.|..++|+.+|.|.++|++-++-. T Consensus 8 ~efK~~aV~l~~~~~g~s~~~vA~~~GIs~~tl~~W~k~~ 47 (97) T 2jn6_A 8 EEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97) T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH T ss_conf 9999999999998499859999999789957446899998 No 186 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Probab=62.76 E-value=6.1 Score=18.22 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=43.1 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHH--CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 7777764210013543334641123455666543102210489999999--85210--1110467999974337877865 Q gi|254780805|r 97 RFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYE--QLISE--YGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 97 R~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~--~l~~~--~~~t~~~lA~~~G~s~s~V~~~ 172 (300) ++.-....|+..||.++.. +-.+-.|++.|...-+. +..++ +-.|.+.||+++|.|..+|.+. T Consensus 5 ~~~~~~~~G~~~ipn~Ll~-------------~y~~lgLs~~e~~vll~l~~~~~~g~~fPS~~~La~~~g~s~~~v~~~ 71 (135) T 2v79_A 5 QFIDMQEQGTSTIPNLLLT-------------HYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNR 71 (135) T ss_dssp HHHHHHHHCEEEEEHHHHH-------------HHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHH T ss_pred HHHHHHHCCCEEECHHHHH-------------HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 9999998898512299997-------------506639998999999999998876997989999998959499999999 Q ss_pred HHHHHHHHHHHHHHHHHHCC Q ss_conf 65654358999987642101 Q gi|254780805|r 173 LRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 173 LrLl~L~~~i~~~l~~~~is 192 (300) ++ .++..|-|+ T Consensus 72 l~---------~L~~kgli~ 82 (135) T 2v79_A 72 LR---------MFIQKGFLF 82 (135) T ss_dssp HH---------HHHHHTSCE T ss_pred HH---------HHHHCCCEE T ss_conf 99---------999889979 No 187 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=62.69 E-value=7.2 Score=17.74 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.4 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |++-......-+. ..|+|..+||+.+|.|+++|...+. T Consensus 26 Lpe~qR~v~~l~~--~e~ls~~EIA~~lgiS~~aV~~~l~ 63 (113) T 1xsv_A 26 LTNKQRNYLELFY--LEDYSLSEIADTFNVSRQAVYDNIR 63 (113) T ss_dssp SCHHHHHHHHHHH--TSCCCHHHHHHHTTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999999--9199999999998969999999999 No 188 >1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2 Probab=62.59 E-value=3.6 Score=19.66 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.5 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 52101110467999974337877865 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~ 172 (300) .++.|| ++..+|+.+|.|++.|++- T Consensus 6 aI~~fG-~~~~lA~~lgIs~~aVsqW 30 (61) T 1rzs_A 6 VIDHFG-TQRAVAKALGISDAAVSQW 30 (61) T ss_dssp HHHHHS-SHHHHHHHHTCCHHHHHHC T ss_pred HHHHHC-CHHHHHHHHCCCHHHHHHC T ss_conf 999968-9999999969999999874 No 189 >2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1 Probab=62.44 E-value=5.5 Score=18.53 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=18.7 Q ss_pred HHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111---04679999743378778656 Q gi|254780805|r 141 ALGYEQLISEYGY---TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 141 A~~~~~l~~~~~~---t~~~lA~~~G~s~s~V~~~L 173 (300) ..+..+|+.+.|+ |..+||+..|.|++++.++. T Consensus 19 l~Aa~~l~~~~G~~~~Tv~~Ia~~agvs~~t~Y~yF 54 (195) T 2iu5_A 19 AKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYF 54 (195) T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTC T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 999999999769630689999998688861798877 No 190 >1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Probab=62.43 E-value=7.3 Score=17.71 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=24.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011104679999743378778656565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +-.|.. .|+++.+||++|+.|+++|++.|.-. T Consensus 26 Iv~l~~-~G~s~~~Iar~l~Vs~~~V~kil~r~ 57 (128) T 1pdn_C 26 IVEMAA-DGIRPCVISRQLRVSHGCVSKILNRY 57 (128) T ss_dssp HHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999998-69999999998896899999999998 No 191 >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV} Probab=62.22 E-value=4.2 Score=19.28 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=20.8 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC-CEEECCC--CCCCCCCCCHHH Q ss_conf 876898899999998863100155-0462056--544533357567 Q gi|254780805|r 55 RNYFESEGLEDLCQSIKSHGIIQP-LIVRAID--NGLYKIIAGERR 97 (300) Q Consensus 55 R~~~~~~~l~eLa~SI~~~G~lqP-i~Vr~~~--~g~y~ii~G~rR 97 (300) ....+++.++++..-++..-.-.- ++++.-+ +.-|.|+.|.=+ T Consensus 19 ~~~l~~~~~~~l~~~~~~r~~~kg~~I~~eg~~~~~iy~I~~G~v~ 64 (230) T 3iwz_A 19 SLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVS 64 (230) T ss_dssp ---CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEE T ss_pred CCCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEECEEE T ss_conf 7789999999999618999989989999289807779999848047 No 192 >3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482} Probab=62.17 E-value=7.4 Score=17.68 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=30.7 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+.-|+|-|.... +++.. |.|..++|..++.|..||.++++ T Consensus 194 ~~~~Ls~re~~il--~~~~~-G~~~~eia~~l~is~~tv~~h~~ 234 (258) T 3clo_A 194 HRNILSEREKEIL--RCIRK-GLSSKEIAATLYISVNTVNRHRQ 234 (258) T ss_dssp HTTSSCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 4899998999999--99985-99999999894999999999999 No 193 >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Probab=61.57 E-value=1.4 Score=22.39 Aligned_cols=17 Identities=6% Similarity=0.163 Sum_probs=8.1 Q ss_pred CHHHHHHHHHHHHHCCC Q ss_conf 98899999998863100 Q gi|254780805|r 59 ESEGLEDLCQSIKSHGI 75 (300) Q Consensus 59 ~~~~l~eLa~SI~~~G~ 75 (300) -..-+..+......+|. T Consensus 81 ~~~~~~~~~~~~~~~~~ 97 (348) T 3bil_A 81 FAAMVTEIQSTASKAGL 97 (348) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999875185 No 194 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=60.45 E-value=7.9 Score=17.49 Aligned_cols=43 Identities=23% Similarity=0.172 Sum_probs=31.0 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...+|++.+ +..+..+....+.|+.+||+.+|.++++|++.+. T Consensus 25 ~~~gls~~~-~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~ 67 (145) T 3g3z_A 25 GQQDLNYNL-FAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK 67 (145) T ss_dssp HTTTCCHHH-HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 886989999-9999999987994999999998969889999999 No 195 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=60.29 E-value=8 Score=17.47 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=31.3 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...+|++ .++..+..+.+..+.|+.+||+.++.++++|++.+. T Consensus 47 ~~~gLt~-~q~~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~ 89 (161) T 3e6m_A 47 ASEKLPT-PKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVD 89 (161) T ss_dssp HHHTCCH-HHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH T ss_pred HHCCCCH-HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 7869799-999999999977998999999998978879999999 No 196 >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} Probab=60.22 E-value=8 Score=17.46 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=45.4 Q ss_pred CCCCCHHHHH--HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC-HHHH Q ss_conf 0221048999--9999852101-1104679999743378778656565435899998764210167777764010-0468 Q gi|254780805|r 132 RKDLNPLEEA--LGYEQLISEY-GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTS-DPLS 207 (300) Q Consensus 132 R~dl~p~e~A--~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~-~~~~ 207 (300) ..+|+..++. .++..|.+.. ..+..+||+.+|.++++|++.++-| ...|-|..- .+- +.+. .... T Consensus 8 m~~ls~~ee~YL~aI~~l~~~~~~v~~~~iA~~L~vs~~svt~~l~~L---------~~~Glv~~~-~~g-i~LT~~G~~ 76 (139) T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL---------EEKGLVKKK-EDG-VWITNNGTR 76 (139) T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH---------HHTTSEEEE-TTE-EEECHHHHH T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHH---------HHCCCEEEE-CCC-CEECHHHHH T ss_conf 303788999999999999975998669999999688907999999999---------988995450-477-157888999 Q ss_pred HHHHHHHCCCCHHHHHHHH Q ss_conf 9999742224778999999 Q gi|254780805|r 208 LAQVIVSKKMSVRDTEELV 226 (300) Q Consensus 208 la~~Ii~~~LSVRe~E~lV 226 (300) +|+.++... |-.|.+. T Consensus 77 ~A~~i~rrH---rl~e~fL 92 (139) T 2x4h_A 77 SINYLIKAH---RVIEILL 92 (139) T ss_dssp HHHHHHHHH---HHHHHHH T ss_pred HHHHHHHHH---HHHHHHH T ss_conf 999999999---9999999 No 197 >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89} Probab=59.37 E-value=8.3 Score=17.37 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=48.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHH-----------H Q ss_conf 2104899999998521011104679999743378778656565435899998764210----167777-----------7 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI----SLGHAR-----------T 198 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i----s~ghar-----------~ 198 (300) ++++.+ +..+..+...-+.|+.+||+.+|.++++|++.+.-+ +..|-| +..+.| . T Consensus 28 glt~~q-~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L---------~~~gli~r~~~~~D~R~~~i~lT~~G~~ 97 (142) T 3bdd_A 28 GISLTR-YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLL---------EESGYIIRKRNPDNQREVLVWPTEQARE 97 (142) T ss_dssp SSCHHH-HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHH---------HHTTSEEEEECSSSTTCEEEEECHHHHH T ss_pred CCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH---------HHCCCEEECCCCCCCCEEEEEECHHHHH T ss_conf 969999-999999987799899999999896986899999999---------8589878448999989668788988999 Q ss_pred H-HHCC-HHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 6-4010-04689999742224778999999764 Q gi|254780805|r 199 L-VSTS-DPLSLAQVIVSKKMSVRDTEELVQEQ 229 (300) Q Consensus 199 L-l~~~-~~~~la~~Ii~~~LSVRe~E~lVk~~ 229 (300) + .... .........+..+||-.+.+.+.+-+ T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l 130 (142) T 3bdd_A 98 ALITNPSAHHQAIKTSMNQILTVEESEQFLATL 130 (142) T ss_dssp HHTTSCCHHHHHHHHHHHTSSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 999999999999999998069999999999999 No 198 >2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus} Probab=59.34 E-value=3.7 Score=19.64 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=25.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 110467999974337877865656543589999876421016777 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA 196 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha 196 (300) .+||.+||..+|.||.+|++.|+ ++-.+|.|+..+. T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~l~---------~L~~~g~I~~~~~ 174 (195) T 2zdb_A 139 TVSHEEIADATASIRESVSKVLA---------DLRREGLIATAYR 174 (195) T ss_dssp ECCHHHHHHTTTSCHHHHHHHHH---------HHHHHTSEEEETT T ss_pred CCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCC T ss_conf 88799999887997999999999---------9998898997099 No 199 >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Probab=59.10 E-value=1.6 Score=21.95 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=15.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998768988999999988631001 Q gi|254780805|r 47 IVPNPHNPRNYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR~~~~~~~l~eLa~SI~~~G~l 76 (300) +.|++.+| |-.+-+..+..-+.++|.. T Consensus 68 ~~~~~~~~---f~~~l~~~i~~~~~~~g~~ 94 (339) T 3h5o_A 68 LIPSLANT---VFLETLTGIETVLDAAGYQ 94 (339) T ss_dssp EESCSTTC---TTHHHHHHHHHHHHHTTCE T ss_pred EECCCCCC---HHHHHHHHHHHHHHHCCCE T ss_conf 95565550---4999999999999976998 No 200 >1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2 Probab=59.09 E-value=1.6 Score=21.94 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=23.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654358999987 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l 186 (300) .-+.+++|+.+|.+...|...+.....+-.+-+.+ T Consensus 130 ~p~~~~ia~~l~~~~~~v~~~~~~~~~~~Sl~~~~ 164 (243) T 1l0o_C 130 APTVTEIADHLGISPEDVVLAQEAVRLPTSIHETV 164 (243) T ss_dssp CCBHHHHHHHHTSCHHHHHHHHHHHHC-------- T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 98388999893999999999999986046655554 No 201 >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Probab=58.84 E-value=4.6 Score=18.98 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=7.9 Q ss_pred CCCHHHHHHHHHHH Q ss_conf 68988999999988 Q gi|254780805|r 57 YFESEGLEDLCQSI 70 (300) Q Consensus 57 ~~~~~~l~eLa~SI 70 (300) .++++.++.|+... T Consensus 21 ~l~~~~~~~l~~~~ 34 (237) T 3fx3_A 21 SLPEQHVDALLSQA 34 (237) T ss_dssp TSCHHHHHHHHTTC T ss_pred CCCHHHHHHHHHCC T ss_conf 79999999999638 No 202 >3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua} Probab=58.79 E-value=8.5 Score=17.31 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=20.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..++|+.+|.|+.+|.+.+..|. T Consensus 39 ser~La~~~~VSr~tVr~Al~~L~ 62 (125) T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELE 62 (125) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 499999993928899999999999 No 203 >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Probab=58.74 E-value=5.2 Score=18.65 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=26.3 Q ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CEEECCC--CCCCCCCCCHHHH Q ss_conf 89823578999876898899999998863100155-0462056--5445333575677 Q gi|254780805|r 44 IHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQP-LIVRAID--NGLYKIIAGERRF 98 (300) Q Consensus 44 i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqP-i~Vr~~~--~g~y~ii~G~rR~ 98 (300) ++.+.-.|+ ...++++.++.|...+...=.-.. +++++-+ +.-|.|+.|.=+. T Consensus 5 l~~l~~~p~--F~~l~~~~~~~l~~~~~~~~~~kg~~I~~~g~~~~~~y~i~~G~v~~ 60 (231) T 3e97_A 5 LDDLKRSPL--FQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRV 60 (231) T ss_dssp HHHHHTSGG--GTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEE T ss_pred HHHHHCCCC--HHCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEECEEEE T ss_conf 999858942--10699999999996089999899999981898177799999576866 No 204 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=58.40 E-value=8.6 Score=17.27 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=36.2 Q ss_pred CCCCCHHHHHHHHHHHH--HH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH Q ss_conf 02210489999999852--10-11104679999743378778656565435--8999987 Q gi|254780805|r 132 RKDLNPLEEALGYEQLI--SE-YGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMI 186 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~--~~-~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l 186 (300) ...|+|.|+-.+=.-+- ++ ..+|..++|+..|.|.++|.|..+=+... .+.+..+ T Consensus 16 ~~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf~gf~efk~~l 75 (111) T 2o3f_A 16 XHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRV 75 (111) T ss_dssp GGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 341799999999999959247643789999989798987999999992779899999999 No 205 >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Probab=57.95 E-value=8.7 Score=17.22 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=31.3 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..-++++-+-. .+..+....+.|+.+||+.+|.++++|++.+. T Consensus 30 l~~~glt~~q~~-iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~ 73 (143) T 3oop_A 30 IASYDVTPEQWS-VLEGIEANEPISQKEIALWTKKDTPTVNRIVD 73 (143) T ss_dssp TTTSSSCHHHHH-HHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 886699999999-99999868997999999998969979999999 No 206 >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Probab=57.45 E-value=8.9 Score=17.16 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.4 Q ss_pred CCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2104899999998521--0111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|++-+ +..+..+.. +.++|+.+||+.+|.++++|++.+. T Consensus 38 ~Lt~~q-~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~ 79 (189) T 3nqo_A 38 ILTSRQ-YMTILSILHLPEEETTLNNIARKMGTSKQNINRLVA 79 (189) T ss_dssp SSCHHH-HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999-999999984789990999999998968869999999 No 207 >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} Probab=57.29 E-value=9 Score=17.15 Aligned_cols=71 Identities=25% Similarity=0.255 Sum_probs=39.9 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC-CHHHHHHHHHHHCCCCHH Q ss_conf 9998521011-10467999974337877865656543589999876421016777776401-004689999742224778 Q gi|254780805|r 143 GYEQLISEYG-YTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVST-SDPLSLAQVIVSKKMSVR 220 (300) Q Consensus 143 ~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~-~~~~~la~~Ii~~~LSVR 220 (300) ++..|..+.+ .+..+||+.+|.|+++|+..|+ .+...|-|.....+. +.+ +...++|+.|+... | T Consensus 44 ~Iy~L~~~~~~vr~~dIA~~L~vs~~sVs~~l~---------~L~~~GlI~~~~~~~-i~LT~~G~~~A~~i~rrH---r 110 (155) T 2h09_A 44 LISDLIREVGEARQVDMAARLGVSQPTVAKMLK---------RLATMGLIEMIPWRG-VFLTAEGEKLAQESRERH---Q 110 (155) T ss_dssp HHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHH---------HHHHTTCEEEETTTE-EEECHHHHHHHHHHHHHH---H T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCCCC-EEECHHHHHHHHHHHHHH---H T ss_conf 999998538977099999996989789999999---------997788987549987-558985999999999999---9 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254780805|r 221 DTEELV 226 (300) Q Consensus 221 e~E~lV 226 (300) -.|.+. T Consensus 111 lle~fL 116 (155) T 2h09_A 111 IVENFL 116 (155) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 208 >2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} Probab=57.22 E-value=4.9 Score=18.84 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|..|+|+.+|.|+++|.++++ T Consensus 31 ~lt~~evA~~LGvs~~~V~~~i~ 53 (148) T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLR 53 (148) T ss_dssp EEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 34899999996998899999998 No 209 >2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Probab=56.86 E-value=5.3 Score=18.60 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=12.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) +|+++||..+|.++.+|++.| T Consensus 168 lt~~~lA~~lg~sr~tvsr~l 188 (220) T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLL 188 (220) T ss_dssp SCHHHHHHHHTSCHHHHHHHH T ss_pred CHHHHHHHHHCCCHHHHHHHH T ss_conf 249999999799999999999 No 210 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Probab=56.76 E-value=9.1 Score=17.09 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=31.6 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 54310221048999999985210111046799997433787786565 Q gi|254780805|r 128 ENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 128 EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+...++++.+-.. +..+ .+...|+.+||+.+|.++++|++.+. T Consensus 28 ~~~~~~~lt~~q~~v-L~~i-~~~~~t~~ela~~~~i~~~~vs~~i~ 72 (146) T 2gxg_A 28 RRLGELNLSYLDFLV-LRAT-SDGPKTMAYLANRYFVTQSAITASVD 72 (146) T ss_dssp HHHHTTTCCHHHHHH-HHHH-TTSCBCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHCCCCHHHHHH-HHHH-HCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 988676979999999-9999-85991999999998979869999999 No 211 >3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656} Probab=56.69 E-value=9.2 Score=17.08 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=19.2 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC--CEEECCC--CCCCCCCCCHHH Q ss_conf 876898899999998863100155--0462056--544533357567 Q gi|254780805|r 55 RNYFESEGLEDLCQSIKSHGIIQP--LIVRAID--NGLYKIIAGERR 97 (300) Q Consensus 55 R~~~~~~~l~eLa~SI~~~G~lqP--i~Vr~~~--~g~y~ii~G~rR 97 (300) ...++++.++.|.......= ..+ +++++-+ ++-|.|+.|.=+ T Consensus 11 f~~L~~~~~~~l~~~~~~~~-~~kg~~i~~~g~~~~~~y~i~~G~v~ 56 (220) T 3dv8_A 11 WNDLNTAQKKLISDNLITQH-VKKGTIIHNGNMDCTGLLLVKSGQLR 56 (220) T ss_dssp GGTSCHHHHHHHHTTCEEEE-ECTTCEEEEGGGCCCEEEEEEESCEE T ss_pred CCCCCHHHHHHHHHCCEEEE-ECCCCEEECCCCCCCEEEEEEECCCC T ss_conf 04799999999985689999-89999998489847889999737112 No 212 >1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9 Probab=56.41 E-value=8.8 Score=17.18 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.3 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 9999852101110467999974337877865 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~ 172 (300) .-++++.. ..|..+|+.+|.+.|+||+. T Consensus 17 ~iL~rla~---~Gq~~vA~~~Gv~eStISRw 44 (83) T 1zs4_A 17 ALLNKIAM---LGTEKTAEAVGVDKSQISRW 44 (83) T ss_dssp HHHHHHHH---HCHHHHHHHHTSCHHHHHHH T ss_pred HHHHHHHH---HCCHHHHHHHCCCHHHHHHH T ss_conf 99999998---55299999969989998730 No 213 >2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7 Probab=56.00 E-value=9.4 Score=17.01 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 4899999998521011104679999-743378778656565435 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLP 179 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~ 179 (300) ..+.|..+++.+..++++|.--|++ +|+|+.+++.+||--.=| T Consensus 19 T~~ia~~i~~eL~~~~I~Q~~FAk~VL~rSQGtLSdLLr~~~~P 62 (101) T 2csf_A 19 TAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENP 62 (101) T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCC T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 99999999999998486599999999801711799998464799 No 214 >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A Probab=55.19 E-value=9.6 Score=16.95 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999743378778656565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .++++.+ +..+..+ ...+.|+.+||+++|.++++|++.+.-| T Consensus 34 ~glt~~q-~~iL~~l-~~~~~t~~~la~~l~i~~~~vs~~i~~L 75 (151) T 3kp7_A 34 YGISAEQ-SHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKL 75 (151) T ss_dssp HTCCHHH-HHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHH T ss_pred CCCCHHH-HHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 5999999-9999998-6289999999999896888999999999 No 215 >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Probab=55.11 E-value=6.6 Score=17.99 Aligned_cols=22 Identities=45% Similarity=0.729 Sum_probs=15.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|+++||..+|.|+.+|++.|+ T Consensus 165 ~t~~~iA~~lg~sr~tvsr~l~ 186 (207) T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLK 186 (207) T ss_dssp CCHHHHHHHHTSCHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHH T ss_conf 7899999887999999999999 No 216 >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 Probab=54.81 E-value=6.9 Score=17.87 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHCC------C-CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998521011------1-046799997433787786565654 Q gi|254780805|r 139 EEALGYEQLISEYG------Y-TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~~~------~-t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +.+..+++.+.... + |..+||+.+|.|+++|...+.+|. T Consensus 15 qi~~~i~~~I~~G~~~pG~~LPser~La~~~~vSr~tvr~Al~~L~ 60 (102) T 1v4r_A 15 DVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK 60 (102) T ss_dssp HHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999999859999939983799999997987799999999999 No 217 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=53.85 E-value=10 Score=16.79 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=30.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+|++. ++..+..+...-|.|+.+||+.+|.++++|++.+. T Consensus 47 ~~gLt~~-q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~ 88 (162) T 3cjn_A 47 ALGLSTA-KMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALD 88 (162) T ss_dssp HHTCCHH-HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH T ss_pred HCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8595999-99999999847998999999998979889999999 No 218 >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2 Probab=53.85 E-value=6.5 Score=18.05 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=12.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) +||++||..+|.|+.+|++.| T Consensus 181 ~t~~~lA~~~G~sr~tvsr~l 201 (232) T 2gau_A 181 LSREELATLSNMTVSNAIRTL 201 (232) T ss_dssp CCHHHHHHHTTSCHHHHHHHH T ss_pred CHHHHHHHHHCCCHHHHHHHH T ss_conf 059999988798999999999 No 219 >3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6} Probab=53.47 E-value=10 Score=16.75 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=58.0 Q ss_pred HHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH Q ss_conf 998521011104679999743-3787786565654358999987642101677777640100468999974222477899 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGK-SRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDT 222 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~-s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~ 222 (300) +-.++.. |.|..++++..|. |++++.+.+ +=.|+..+.+....-..++.- .++..+ |+...+.-... T Consensus 24 I~~~l~~-G~sl~~i~~~~gvps~sT~~~Wl---~~~~ef~e~y~~Ar~~~~~~~----~~~~~~----i~~~~~~~~~~ 91 (143) T 3hef_A 24 ICSLLSS-GESLLKVCKRPGMPDKSTVFRWL---AKHEDFRDKYAKATEARADSI----FEEIFE----IADNAIPDAAE 91 (143) T ss_dssp HHHHHHT-TCCHHHHHTSTTCCCHHHHHHHT---TTCHHHHHHHHHHHHHHHHHH----HHHHHH----HHHTCCSSHHH T ss_pred HHHHHHC-CCCHHHHHHCCCCCCHHHHHHHH---HHCHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHCCCCHHH T ss_conf 9999988-98599998707999689999999---718999999999999999999----999999----98610246188 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCC-CCEEEEEEECCHH Q ss_conf 9999764102222223456655689789999999999739879997179-8228999858989 Q gi|254780805|r 223 EELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRN-NKGQFCIKYETNE 284 (300) Q Consensus 223 E~lVk~~~~~~~~~kk~~~~~~~k~~~i~~le~~L~~~lGtkV~I~~~~-~kGkI~I~f~s~e 284 (300) -..++. ..+...--+++..-+.+|-|+++..++ ..|-|.|+..-.- T Consensus 92 ~~~~r~----------------~~~~~kw~l~kl~P~~ygdk~~~e~~g~~~~~i~i~~~~~~ 138 (143) T 3hef_A 92 VAKARL----------------RVDTRKWALARMNPRKYGDKVTNELVGKDGGAIQIETSPMS 138 (143) T ss_dssp HHHHHH----------------HHHHHHHHHHHHSHHHHSCCEEEEEECGGGSCCCEEEC--- T ss_pred HHHHHH----------------HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCH T ss_conf 888688----------------89999999976683013656431036789987688732516 No 220 >2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B Probab=53.10 E-value=8.4 Score=17.33 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=22.2 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111046799997433787786565 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...+.++| |...|+.||..++.|+..|| T Consensus 8 ~dyv~~~G--Q~k~A~~lGV~q~AIsKAlr 35 (66) T 2ovg_A 8 KDYAMRFG--QTKTAKDLGVYPSSINQAIH 35 (66) T ss_dssp HHHHHHHC--HHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHC--HHHHHHHCCCCHHHHHHHHH T ss_conf 99999978--59999990976899999997 No 221 >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Probab=52.81 E-value=10 Score=16.71 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=22.2 Q ss_pred HHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 99999739879997179822899985898999999998375 Q gi|254780805|r 255 KKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 255 ~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) ++|.+..|.-+ - ..|+|.+..-+.+++++|.+.|++ T Consensus 356 ~~L~~~~gV~~--~---~g~Ri~~~gl~~~~i~~la~ai~~ 391 (394) T 2ay1_A 356 KRIKEEFGIYM--V---GDSRINIAGLNDNTIPILARAIIE 391 (394) T ss_dssp HHHHHHHCEEC--C---TTCEEEGGGCCTTTHHHHHHHHHH T ss_pred HHHHHHCCEEE--C---CCCEEEECCCCHHHHHHHHHHHHH T ss_conf 99999688860--6---971699547998889999999998 No 222 >2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Probab=52.31 E-value=1.4 Score=22.23 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=38.5 Q ss_pred CCCCCHHHHHHH--------HHHHCCCCCCCCCC-----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH Q ss_conf 333575677777--------64210013543334-----64112345566654310221048999999985210111046 Q gi|254780805|r 90 KIIAGERRFRAA--------KMASLSEVPVIIRN-----VDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQN 156 (300) Q Consensus 90 ~ii~G~rR~rAa--------~~~g~~~ip~iv~~-----~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~ 156 (300) .|.+|+|||.-. -.+|.+.+--++.- +.--..+..+ .||..|. -++-..+-.|+..+-.... T Consensus 21 iImDGNrRwAk~~g~~~~~Gh~~G~~~l~~i~~~c~~~gI~~lTvYafS-~eN~kR~----~~Ev~~L~~L~~~~l~~~~ 95 (245) T 2d2r_A 21 IIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFS-TENWKRP----KSEVDFLMKMLKKYLKDER 95 (245) T ss_dssp EECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC---------------CHHHHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC-HHHHCCC----HHHHHHHHHHHHHHHHHHH T ss_conf 9435869999887997789999999999999999997799889977406-8776888----8999999999999876655 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7999974337877865656543589999876421 Q gi|254780805|r 157 DIGSIVGKSRSHVANILRILKLPSSVREMIRKEE 190 (300) Q Consensus 157 ~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~ 190 (300) +....-|.. |.-.-.+..||+.+++.+..-+ T Consensus 96 ~~~~~~~ir---i~~iG~~~~lp~~l~~~i~~~e 126 (245) T 2d2r_A 96 STYLDNNIR---FRAIGDLEGFSKELRDTILQLE 126 (245) T ss_dssp HHHHHTTCE---EEEESCGGGSCHHHHHHHHHHH T ss_pred HHHCCCCEE---EEEECCCCCCCHHHHHHHHHHH T ss_conf 442126749---9986365457736655444567 No 223 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=52.16 E-value=2.4 Score=20.77 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=13.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 235789998768988999999988631001 Q gi|254780805|r 47 IVPNPHNPRNYFESEGLEDLCQSIKSHGII 76 (300) Q Consensus 47 i~~~p~~pR~~~~~~~l~eLa~SI~~~G~l 76 (300) +.|+..+| |..+-+..+.....+.|.. T Consensus 76 i~~~~~~~---~~~~~~~~~~~~~~~~g~~ 102 (355) T 3e3m_A 76 LLPSLNNL---HFAQTAQSLTDVLEQGGLQ 102 (355) T ss_dssp EESCSBCH---HHHHHHHHHHHHHHHTTCE T ss_pred EECCCCCC---CEEECCCCHHHHHHCCCCC T ss_conf 96877653---0100211012223206850 No 224 >1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A Probab=51.99 E-value=11 Score=16.60 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=17.3 Q ss_pred HHHCCCCCCCCCCCC-CHHHH-----------HHHHHHHHHCCCCC Q ss_conf 898235789998768-98899-----------99999886310015 Q gi|254780805|r 44 IHSIVPNPHNPRNYF-ESEGL-----------EDLCQSIKSHGIIQ 77 (300) Q Consensus 44 i~~i~~~p~~pR~~~-~~~~l-----------~eLa~SI~~~G~lq 77 (300) .+.|..+-++|-..+ ++..| .+--..+...|++. T Consensus 17 ~~~I~~g~l~pG~~LPse~eLa~~~gVSr~tVReAl~~L~~eGlv~ 62 (239) T 1hw1_A 17 IESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLT 62 (239) T ss_dssp HHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCE T ss_conf 9999859999919991599999998929999999999999879955 No 225 >1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2 Probab=51.27 E-value=11 Score=16.53 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=28.5 Q ss_pred CCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210--1110467999974337877865 Q gi|254780805|r 133 KDLNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~ 172 (300) +.|+|-|...-..+.--. ..+|..+||+.+|.|+..|+.. T Consensus 17 ~~L~~rEr~Il~~ryGl~~~~~~tl~eIa~~lgvSrerVRQi 58 (81) T 1tlh_B 17 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 58 (81) T ss_dssp TTCCHHHHHHHHHHTCCCTTSCCCHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHH T ss_conf 709999999999982789998557999999989799999999 No 226 >2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1 Probab=51.07 E-value=11 Score=16.56 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=21.2 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---104679999743378778656 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) ..+++.+.| .|.++||++.|.|++++.++. T Consensus 17 a~~l~~~~G~~~~t~~~IA~~agvs~~tiY~~F 49 (199) T 2o7t_A 17 TCNLYRTHHHDSLTMENIAEQAGVGVATLYRNF 49 (199) T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC T ss_conf 999999749140779999998686913177608 No 227 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=51.02 E-value=11 Score=16.50 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=31.8 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+.+|++.+ +..+..+-...+.++.+||+++|.++++|++.++ T Consensus 29 l~~~glt~~q-~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~ 72 (142) T 2fbi_A 29 LNQHGLTEQQ-WRVIRILRQQGEMESYQLANQACILRPSMTGVLA 72 (142) T ss_dssp HHHHTCCHHH-HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9884989999-9999999987997999999997989889999999 No 228 >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Probab=50.78 E-value=7.5 Score=17.64 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=20.7 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCC-CEEECCC--CCCCCCCCCHHH Q ss_conf 9876898899999998863100155-0462056--544533357567 Q gi|254780805|r 54 PRNYFESEGLEDLCQSIKSHGIIQP-LIVRAID--NGLYKIIAGERR 97 (300) Q Consensus 54 pR~~~~~~~l~eLa~SI~~~G~lqP-i~Vr~~~--~g~y~ii~G~rR 97 (300) ....++++.++.|.......-+-.. +++++-+ +.-|.|+.|.=+ T Consensus 16 lF~~ls~~~l~~l~~~~~~~~~~kg~~i~~~g~~~~~~y~i~~G~v~ 62 (227) T 3dkw_A 16 LFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVK 62 (227) T ss_dssp TTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEE T ss_pred HHHCCCHHHHHHHHHCCEEEEECCCCEEEECCCCCCEEEEEEECHHH T ss_conf 45279999999999629999989999998489817669999868213 No 229 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=50.60 E-value=2.7 Score=20.52 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 88999999988631001 Q gi|254780805|r 60 SEGLEDLCQSIKSHGII 76 (300) Q Consensus 60 ~~~l~eLa~SI~~~G~l 76 (300) ...+.++......+|.. T Consensus 79 ~~~~~~~~~~~~~~~~~ 95 (338) T 3dbi_A 79 SELLFHAARMAEEKGRQ 95 (338) T ss_dssp HHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHHHCCE T ss_conf 99999999999970871 No 230 >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2 Probab=50.41 E-value=8.9 Score=17.17 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=14.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++++|..+|.|+.+|++.| T Consensus 187 ~~~~~lA~~~g~sr~tv~R~L 207 (232) T 1zyb_A 187 VKMDDLARCLDDTRLNISKTL 207 (232) T ss_dssp CCHHHHHHHHTSCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 899999989798999999999 No 231 >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28 Probab=50.29 E-value=12 Score=16.43 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=28.9 Q ss_pred HHCCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 31022104899999998521--0111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...-+|++.+-. .+..+.. ...+|+.+||+.+|.++++|++.+. T Consensus 27 ~~~~glt~~q~~-vL~~l~~~~~~~~t~~~La~~l~i~~~~vs~~v~ 72 (141) T 3bro_A 27 AKKYDLTGTQMT-IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 72 (141) T ss_dssp HHTTTCCHHHHH-HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 988698999999-9999984899995999999998978858999999 No 232 >1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli} Probab=50.00 E-value=3.6 Score=19.72 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=24.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656565435899 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLPSSV 182 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i 182 (300) +...++.+.+|.|+++|.+.++--+.|+++ T Consensus 11 lr~keV~~~~glsrstiy~~i~~G~FP~pi 40 (66) T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLPKAK 40 (66) T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCCCSE T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCE T ss_conf 649999999897999999999879999987 No 233 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=49.99 E-value=2.8 Score=20.42 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=8.4 Q ss_pred CHHHHHHHHHHHHHCCC Q ss_conf 98899999998863100 Q gi|254780805|r 59 ESEGLEDLCQSIKSHGI 75 (300) Q Consensus 59 ~~~~l~eLa~SI~~~G~ 75 (300) ..+-+..+.....++|. T Consensus 75 ~~~~~~~i~~~~~~~g~ 91 (330) T 3ctp_A 75 FNQMASVIEEYAKNKGY 91 (330) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHHHCCC T ss_conf 00456799999997799 No 234 >1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H Probab=49.77 E-value=12 Score=16.38 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=28.5 Q ss_pred CCCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985-21-011104679999743378778656 Q gi|254780805|r 133 KDLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 133 ~dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) ..|+|-|...-..+. ++ ...+|..+||+.+|.|+..|+..- T Consensus 9 ~~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~ 51 (73) T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIE 51 (73) T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 7299999999999818999998789999999896999999999 No 235 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=49.76 E-value=12 Score=16.38 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=27.2 Q ss_pred CCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210-111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+|++.+- ..+..+... -++|+.+||+.+|.++++|++.+. T Consensus 32 ~~glt~~q~-~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~ 74 (146) T 2fbh_A 32 HLGLSQARW-LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 74 (146) T ss_dssp GGCCTTTHH-HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH T ss_pred HCCCCHHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 859899999-9999998679999999999998968989999999 No 236 >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Probab=49.36 E-value=9.2 Score=17.09 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|+.++|..+|.|+.+|++.|+ T Consensus 146 ~~t~~~iA~~lg~sr~tv~r~l~ 168 (202) T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIG 168 (202) T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 88799999897988999999999 No 237 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=49.18 E-value=2.9 Score=20.29 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=7.7 Q ss_pred CHHHHHHHHHHHHHCCC Q ss_conf 98899999998863100 Q gi|254780805|r 59 ESEGLEDLCQSIKSHGI 75 (300) Q Consensus 59 ~~~~l~eLa~SI~~~G~ 75 (300) ...-+..+.....+.|. T Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (349) T 1jye_A 76 PSQIVAAILSRADQLGA 92 (349) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 02555677766664055 No 238 >3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua} Probab=48.75 E-value=12 Score=16.28 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=25.0 Q ss_pred HHHHHHH-HHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985-21011---1046799997433787786565 Q gi|254780805|r 141 ALGYEQL-ISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l-~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -.++.+| +++.| .|..+||+..|.|++++.++.. T Consensus 25 ~~a~~~Lf~~~kG~~~~Sv~dIa~~AgVs~~t~Y~~F~ 62 (185) T 3o60_A 25 YTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHK 62 (185) T ss_dssp HHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHCC T ss_conf 99999999880893108799999987888666223469 No 239 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=48.75 E-value=3 Score=20.22 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 8899999998863100 Q gi|254780805|r 60 SEGLEDLCQSIKSHGI 75 (300) Q Consensus 60 ~~~l~eLa~SI~~~G~ 75 (300) .+-+..+.....+.|. T Consensus 80 ~~l~~~i~~~~~~~g~ 95 (333) T 3jvd_A 80 SESLQTIQQDLKAAGY 95 (333) T ss_dssp HHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHCCC T ss_conf 8899999999998498 No 240 >2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A Probab=48.59 E-value=2.9 Score=20.26 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=26.5 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+.....-. --.|+|..+||+.+|.|.++|.+++. T Consensus 136 L~~~~r~vl~l~--~~~g~s~~eIA~~lgis~~tV~~~l~ 173 (184) T 2q1z_A 136 LPEAQRALIERA--FFGDLTHRELAAETGLPLGTIKSRIR 173 (184) T ss_dssp SCHHHHHHHHHH--HHSCCSSCCSTTTCCCCCHHHHHHHH T ss_pred CCHHHHHHHHHH--HHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999999999--99299999999998939999999999 No 241 >1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=48.44 E-value=12 Score=16.25 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=9.3 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-.+||++.|.|++++.++ T Consensus 30 s~~~IA~~agvs~~tlY~~ 48 (183) T 1zk8_A 30 TLASLAQTLGVRSPSLYNH 48 (183) T ss_dssp CHHHHHHHHTSCHHHHTTT T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 6999999889198899888 No 242 >3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} Probab=48.42 E-value=12 Score=16.25 Aligned_cols=68 Identities=10% Similarity=0.133 Sum_probs=30.8 Q ss_pred CCCCHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCHHHHHH-----------HHHHH Q ss_conf 7610222125586873377654334210000134566024038982357899987689889999-----------99988 Q gi|254780805|r 2 SNNYSKRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLED-----------LCQSI 70 (300) Q Consensus 2 ~~~~~~~~lGrgl~al~~~~~~~~~~~~~~~~~~~~~~~~i~i~~i~~~p~~pR~~~~~~~l~e-----------La~SI 70 (300) +++|.|+.-.-++++.++...+..... ...+.+-=-+.|.-+-+.|-..+++..|.+ =-.-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~lr~~I~~g~l~pG~~L~e~~La~~~gvSRtpVREAL~~L 73 (237) T 3c7j_A 1 SNAMRKSDREAFLSSVLGNEQPPAHLA-------RTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQL 73 (237) T ss_dssp CCHHHHHHHHHHHHHHHCCCCCCGGGH-------HHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCHHHHCHHHHHHHHCCCCCCCCCCCH-------HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 923120200456544115789997438-------9999999999998199999097499999998895869999999999 Q ss_pred HHCCCC Q ss_conf 631001 Q gi|254780805|r 71 KSHGII 76 (300) Q Consensus 71 ~~~G~l 76 (300) ...|++ T Consensus 74 ~~eGlv 79 (237) T 3c7j_A 74 EAQSLL 79 (237) T ss_dssp HHTTSE T ss_pred HHCCCC T ss_conf 987886 No 243 >1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7 Probab=48.20 E-value=12 Score=16.23 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=39.9 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH Q ss_conf 4899999998521011104679999-74337877865656543589999876421016777776401004 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDP 205 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~ 205 (300) ..|.|..++..+..++++|.--|+. +|+|+.+++.+|+=-+=| -..+..|.-.+-.-+--+.+|+. T Consensus 19 T~eI~~~v~~eL~~~~IsQ~~Fa~~vL~rSQGtlSdLL~~PK~p---w~~~~~gre~y~RM~~wL~~pe~ 85 (101) T 1wiz_A 19 SPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDP---RTASQSLLVNLRAMQNFLNLPEV 85 (101) T ss_dssp CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCT---TTCCHHHHHHHHHHHHHTTSCHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHCCHHH T ss_conf 89999999999999598799999999753828899999579982---55513567999999999838388 No 244 >3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} Probab=47.73 E-value=9.9 Score=16.86 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=11.0 Q ss_pred HHHCCCCCCCCCCCCCHHHHH Q ss_conf 898235789998768988999 Q gi|254780805|r 44 IHSIVPNPHNPRNYFESEGLE 64 (300) Q Consensus 44 i~~i~~~p~~pR~~~~~~~l~ 64 (300) .+.|.-+-+.|-..+++..|. T Consensus 26 ~~~I~~G~l~pG~~L~e~~La 46 (222) T 3ihu_A 26 MSGLELGTFVPGQRLVETDLV 46 (222) T ss_dssp HHHHHHTSSCTTCEECHHHHH T ss_pred HHHHHCCCCCCCCCCCHHHHH T ss_conf 999984999992971899999 No 245 >3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} Probab=47.47 E-value=9.1 Score=17.11 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=11.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656565 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl 176 (300) |..+||+.+|.||.||.+.|..| T Consensus 38 sE~eLa~~~~VSR~TVR~Al~~L 60 (248) T 3f8m_A 38 AEREIAEQFEVARETVRQALREL 60 (248) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 79999999797999999999999 No 246 >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ... Probab=47.46 E-value=13 Score=16.15 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=22.1 Q ss_pred HHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC Q ss_conf 999999973987999717982289998589899999999837 Q gi|254780805|r 253 LEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 253 le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~ 294 (300) .-.+|.+..|.-+ - ..|+|.+..-+.++++++.+.++ T Consensus 357 ~~~~L~~~~~V~l--~---~g~Ri~~a~l~~~~i~~~a~ai~ 393 (396) T 2q7w_A 357 QVLRLREEFGVYA--V---ASGRVNVAGMTPDNMAPLCEAIV 393 (396) T ss_dssp HHHHHHHHHCEEC--C---TTCEEEGGGCCTTTHHHHHHHHH T ss_pred HHHHHHHHCCEEE--C---CCCEEEECCCCHHHHHHHHHHHH T ss_conf 9999999599984--8---99879954799888999999999 No 247 >1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A Probab=47.42 E-value=13 Score=16.15 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=25.2 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH Q ss_conf 99985210111046799997433787786565-654358 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR-ILKLPS 180 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~~ 180 (300) ++........+|.++||+.+|.|+++.++..+ ....+| T Consensus 84 ~~~~~~~~~~~sl~~la~~~g~S~~~l~R~Fk~~~G~tp 122 (133) T 1u8b_A 84 ACRLLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTP 122 (133) T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH T ss_pred HHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCH T ss_conf 999970479999999942619899999999999989299 No 248 >3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Probab=47.38 E-value=9.5 Score=16.97 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=28.6 Q ss_pred CCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210-1110467999974337877865656 Q gi|254780805|r 133 KDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) -+|++.+- ..+..|... .++|+.+||+.+|.++++|++.+.- T Consensus 43 ~glt~~q~-~vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~ 85 (160) T 3boq_A 43 TGLSLAKF-DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNR 85 (160) T ss_dssp HSCCHHHH-HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHH T ss_pred HCCCHHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 19299999-99999986899998999999989688589999999 No 249 >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A* Probab=46.87 E-value=11 Score=16.65 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=14.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) +|+.+||..+|.|+.+|++.| T Consensus 178 ~t~~~lA~~lg~s~~tvsr~l 198 (227) T 3d0s_A 178 LTQEEIAQLVGASRETVNKAL 198 (227) T ss_dssp CCHHHHHHHHTSCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 899999988798999999999 No 250 >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} Probab=46.54 E-value=13 Score=16.06 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=29.7 Q ss_pred HHCCCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 3102210489999999852--10111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLI--SEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~--~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +...+|++.+ +..+..+. ...++|+.+||+.+|.++++|++.+. T Consensus 24 l~~~glt~~q-~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~ 69 (139) T 3eco_A 24 LEQFDITNEQ-GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLR 69 (139) T ss_dssp HGGGTCCHHH-HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8776989999-999999983599996999999998968878999999 No 251 >2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, cell shape, cell division; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Probab=46.43 E-value=2.6 Score=20.59 Aligned_cols=93 Identities=18% Similarity=0.099 Sum_probs=38.2 Q ss_pred CCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCH-----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH Q ss_conf 33357567777764--------2100135433346411-----2345566654310221048999999985210111046 Q gi|254780805|r 90 KIIAGERRFRAAKM--------ASLSEVPVIIRNVDNK-----SSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQN 156 (300) Q Consensus 90 ~ii~G~rR~rAa~~--------~g~~~ip~iv~~~~d~-----~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~ 156 (300) .|.+|+|||.-.+- +|...+.-++.-.-+. ..+..+ .||..|. + ++-..+-.|..++-.... T Consensus 61 iImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~GI~~LTvYaFS-tEN~~R~---~-~EV~~L~~L~~~~l~~~~ 135 (284) T 2vg3_A 61 IVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFS-TENWKRS---P-EEVRFLMGFNRDVVRRRR 135 (284) T ss_dssp EECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEE-TTGGGSC---H-HHHHHHHHHHHHHHHHHH T ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC-HHHHCCC---C-HHHHHHHHHHHHHHHHHH T ss_conf 9644868999877997779999999999999999998699789999752-2342356---4-899999999999999998 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 7999974337877865656543589999876421 Q gi|254780805|r 157 DIGSIVGKSRSHVANILRILKLPSSVREMIRKEE 190 (300) Q Consensus 157 ~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~ 190 (300) +.....|.. |.-.-.+-.||+++++.+..-. T Consensus 136 ~~~~~~~ir---vr~iGd~~~lp~~l~~~i~~~e 166 (284) T 2vg3_A 136 DTLKKLGVR---IRWVGSRPRLWRSVINELAVAE 166 (284) T ss_dssp HHHHHTTEE---EEEESCCTTSCHHHHHHHHHHH T ss_pred HHHHHHCCC---EEECCCCCCCCHHHHHHHHHHE T ss_conf 888873754---1312455568667653232010 No 252 >2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} Probab=46.41 E-value=11 Score=16.66 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHHCCCCC Q ss_conf 9889999999886310015 Q gi|254780805|r 59 ESEGLEDLCQSIKSHGIIQ 77 (300) Q Consensus 59 ~~~~l~eLa~SI~~~G~lq 77 (300) +-..+.|=-..+...|++. T Consensus 41 SRt~VREAL~~L~~~Glv~ 59 (239) T 2di3_A 41 SRSSLREALRVLEALGTIS 59 (239) T ss_dssp CHHHHHHHHHHHHHHTSEE T ss_pred CHHHHHHHHHHHHHCCCEE T ss_conf 9899999999999789978 No 253 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=46.34 E-value=3.4 Score=19.84 Aligned_cols=17 Identities=0% Similarity=-0.298 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHCCCC Q ss_conf 88999999988631001 Q gi|254780805|r 60 SEGLEDLCQSIKSHGII 76 (300) Q Consensus 60 ~~~l~eLa~SI~~~G~l 76 (300) .+-+..+.......|.. T Consensus 79 ~~~~~~~~~~~~~~g~~ 95 (332) T 2o20_A 79 AAITRGVDDIASMYKYN 95 (332) T ss_dssp HHHHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHHCCCE T ss_conf 22112567777635925 No 254 >3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian} Probab=45.67 E-value=7.3 Score=17.71 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=12.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 110467999974337877865656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) -+|-.++|+.+|.|..+|.-|-+. T Consensus 16 ~ytIgevA~~~gvs~~tLRyYE~~ 39 (148) T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDKQ 39 (148) T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHHC T ss_conf 765999999989599999999987 No 255 >1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7 Probab=45.64 E-value=9 Score=17.14 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=29.9 Q ss_pred HHCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH----H--HHHHHHHHHHH Q ss_conf 310221048999999985210-111046799997----4--33787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISE-YGYTQNDIGSIV----G--KSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~----G--~s~s~V~~~Lr 174 (300) ..|..|+--+.....+.+.+. ...+|.++|+.+ | .|+|||++.|+ T Consensus 7 ~~R~~lt~~~k~~l~~~~~~~~~~~~Q~~la~wf~~~fg~~Is~STvs~ILk 58 (144) T 1iuf_A 7 IKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILS 58 (144) T ss_dssp CSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 6565189999999999998769987799999999999879986989999997 No 256 >3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4} Probab=45.21 E-value=14 Score=15.93 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=19.8 Q ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111---04679999743378778656 Q gi|254780805|r 145 EQLISEYGY---TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~~---t~~~lA~~~G~s~s~V~~~L 173 (300) ..++.+.|+ |-.+||++.|.|++++.++. T Consensus 27 ~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F 58 (218) T 3gzi_A 27 RNLFIERPYAQVSIREIASLAGTDPGLIRYYF 58 (218) T ss_dssp HHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 99999749141649999998791976888745 No 257 >2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} Probab=44.20 E-value=2.8 Score=20.42 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=28.9 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|+.+|... +..|.+..-.|..+||+.+|.|+++|+++++ T Consensus 9 ~~lD~~D~~I-l~~L~~d~R~s~~~IA~~lg~S~~tV~~Ri~ 49 (163) T 2gqq_A 9 KDLDRIDRNI-LNELQKDGRISNVELSKRVGLSPTPCLERVR 49 (163) T ss_dssp --CCSHHHHH-HHHHHHCSSCCTTGGGTSSSCCTTTSSSTHH T ss_pred CCHHHHHHHH-HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 2244999999-9999985899999999998909999999999 No 258 >3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea} Probab=44.14 E-value=14 Score=15.83 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=15.2 Q ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111---04679999743378778656 Q gi|254780805|r 145 EQLISEYGY---TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~~---t~~~lA~~~G~s~s~V~~~L 173 (300) .++..+.|+ |.++||++.|.|++++.++. T Consensus 17 ~~lf~e~G~~~~s~~~IA~~AGvs~~~iy~yF 48 (213) T 3ni7_A 17 VELAAHTSWEAVRLYDIAARLAVSLDEIRLYF 48 (213) T ss_dssp HHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHC T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHC T ss_conf 99999869768789999999099999998746 No 259 >1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A Probab=44.00 E-value=14 Score=15.81 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=25.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .||+-|.- +-+++.+ |+|..++|+.++.|..||.++++ T Consensus 154 ~LT~rE~~--vl~ll~~-g~sn~~IA~~L~iS~~TV~~h~~ 191 (215) T 1a04_A 154 QLTPRERD--ILKLIAQ-GLPNKMIARRLDITESTVKVHVK 191 (215) T ss_dssp GSCHHHHH--HHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHH--HHHHHHH-HCCHHHHHHHHCCCHHHHHHHHH T ss_conf 08989999--9999998-66312679997886879999999 No 260 >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} Probab=43.89 E-value=14 Score=15.80 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=28.4 Q ss_pred CCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210-111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|++ .++..+..+.+. -++|+.+||+.+|.++++|++.+. T Consensus 35 ~gls~-~q~~iL~~l~~~~~~~t~~ela~~l~~~~~~vsr~v~ 76 (150) T 3fm5_A 35 TGLRV-RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVD 76 (150) T ss_dssp GTCCH-HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHH T ss_pred CCCCH-HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 49799-9999999999859898999999997887877889999 No 261 >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406} Probab=43.87 E-value=3.9 Score=19.44 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=19.1 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCC--CEEECC--CCCCCCCCCCHHH Q ss_conf 76898899999998863100155--046205--6544533357567 Q gi|254780805|r 56 NYFESEGLEDLCQSIKSHGIIQP--LIVRAI--DNGLYKIIAGERR 97 (300) Q Consensus 56 ~~~~~~~l~eLa~SI~~~G~lqP--i~Vr~~--~~g~y~ii~G~rR 97 (300) ..++++.++.|+..++..= +.+ .++++- .++-|.|+.|.-| T Consensus 16 ~~Ls~~~~~~l~~~~~~~~-~~kg~~l~~~g~~~~~~y~I~~G~v~ 60 (194) T 3dn7_A 16 IFLTDEDAGTLSAFFQLKK-VRKKETLLKTGEICRINYFVVKGCLR 60 (194) T ss_dssp SCCCHHHHHHHHTTCEEEE-ECTTCEEECTTSBCCEEEEEEESEEE T ss_pred CCCCHHHHHHHHHCCEEEE-ECCCCEEECCCCCCCEEEEEEECEEE T ss_conf 7989999999985789999-89999998699856469999967388 No 262 >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal aldimine, schiff base; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Probab=43.74 E-value=15 Score=15.79 Aligned_cols=36 Identities=8% Similarity=0.347 Sum_probs=21.7 Q ss_pred HHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC Q ss_conf 99999973987999717982289998589899999999837 Q gi|254780805|r 254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 254 e~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~ 294 (300) -.+|.+..|..+ .. .++|.+-+-+.++++++.+.+. T Consensus 359 ~~~L~~~~gV~l----~p-g~Ri~~a~l~~~~i~~la~ai~ 394 (397) T 3fsl_A 359 VDRLREEFGVYL----IA-SGRMCVAGLNTANVQRVAKAFA 394 (397) T ss_dssp HHHHHHTTCEEC----CT-TCEEEGGGCCTTTHHHHHHHHH T ss_pred HHHHHHHCCEEE----CC-CCEEEECCCCHHHHHHHHHHHH T ss_conf 999999699994----79-8679854499899999999999 No 263 >2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17 Probab=43.69 E-value=15 Score=15.78 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=38.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 110467999974337877865656543589999876421016777776401004689999742224778999999764 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQ 229 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~~~la~~Ii~~~LSVRe~E~lVk~~ 229 (300) ..|++++|+.+|.|+.++.+--.=.+---+-+..|.+..++.-.+.+ -.++-..|....=||..++-..++. T Consensus 48 k~T~~eiAeEvGvsr~TLy~Wk~qnk~Fi~Y~n~lAd~~l~~~r~Ev------Y~qL~~~i~g~~psVKaidL~mkr~ 119 (155) T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFLAEKREQV------YSKLMQLILGPQPSVKAMQLYMQRF 119 (155) T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHTTHHHH------HHHHHHHHHSSSCCHHHHHHHHHHT T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 64799999995746999998860587799999999999999999999------9999998618997458999999982 No 264 >3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049} Probab=43.45 E-value=14 Score=15.92 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=9.3 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-++||++.|.|++++.++ T Consensus 36 t~~~IA~~agvs~~tiY~~ 54 (199) T 3crj_A 36 TIQRIADEYGKSTAAVHYY 54 (199) T ss_dssp CHHHHHHHHTSCHHHHHTT T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999979199999888 No 265 >2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1 Probab=43.06 E-value=13 Score=16.11 Aligned_cols=19 Identities=11% Similarity=0.315 Sum_probs=7.8 Q ss_pred HHCCCCCCCCCCCCCHHHH Q ss_conf 9823578999876898899 Q gi|254780805|r 45 HSIVPNPHNPRNYFESEGL 63 (300) Q Consensus 45 ~~i~~~p~~pR~~~~~~~l 63 (300) +.|.-.-+.|=..+++..| T Consensus 39 ~~I~~g~l~pG~~L~E~~L 57 (239) T 2hs5_A 39 DAIIDGTFRPGARLSEPDI 57 (239) T ss_dssp HHHHHTSSCTTCEECHHHH T ss_pred HHHHHCCCCCCCCCCHHHH T ss_conf 9998189999197089999 No 266 >3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, structural genomics, center for structural genomics of infectious diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} Probab=42.65 E-value=15 Score=15.69 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHCCEEEE--EC-CCCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 99999999973987999--71-798228999858-98999999998375 Q gi|254780805|r 251 TDLEKKISSKVGLNISI--KH-RNNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I--~~-~~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) ..+.+.|.+.-|.-|.= .. ..+.+-+.|.|. +.+.++.-+++|+. T Consensus 332 ~~~~~~L~e~~~V~v~PG~~Fg~~~~~~~Ris~~~~~~~l~eal~Rl~~ 380 (383) T 3kax_A 332 DERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCPRSVLEEILNRLRH 380 (383) T ss_dssp HHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 9999999964999997764428899897999962899999999999999 No 267 >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; NP_940074.1, structural genomics, joint center for structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Probab=42.61 E-value=15 Score=15.68 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=15.2 Q ss_pred CCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 98228999858-98999999998375 Q gi|254780805|r 271 NNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 271 ~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) .+.|-|.|.|. +.|+++.-+++|.+ T Consensus 346 ~~~~~iRis~~~~~e~l~eal~Rl~~ 371 (377) T 3fdb_A 346 DGTGFCRLNFATSREVLEEAIDRMAK 371 (377) T ss_dssp GGTTEEEEECCSCHHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 99886999971899999999999999 No 268 >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Probab=42.55 E-value=15 Score=15.67 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=28.8 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-+|+..+ +..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 24 ~~glt~~q-~~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~ 65 (144) T 1lj9_A 24 ELSLTRGQ-YLYLVRVCENPGIIQEKIAELIKVDRTTAARAIK 65 (144) T ss_dssp GGTCTTTH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 77989999-9999999848997999999998978889999999 No 269 >2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1} Probab=42.38 E-value=15 Score=15.65 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=12.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|.++||+..|.|++++.++. T Consensus 33 ~t~~~IA~~aGvs~~tlY~~F 53 (196) T 2qwt_A 33 VPMDEIARRAGVGAGTVYRHF 53 (196) T ss_dssp SCHHHHHHHTTSCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 889999999694999998784 No 270 >3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Probab=42.26 E-value=15 Score=15.64 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=28.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 110467999974337877865656-54358999987642101677777640 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIRKEEISLGHARTLVS 201 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~~~~is~ghar~Ll~ 201 (300) .++.+++|+.+|.|+.++.+..+- ...++ .+.+..-. +.+|+.++. T Consensus 18 ~~~~~~la~~~~~S~~~l~r~fk~~~g~s~--~~yi~~~R--l~~a~~lL~ 64 (108) T 3mn2_A 18 PITIEKLTALTGISSRGIFKAFQRSRGYSP--MAFAKRVR--LQHAHNLLS 64 (108) T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHTSSCH--HHHHHHHH--HHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHH--HHHHHHHHH T ss_conf 999999999989199999999999989196--89999999--999999987 No 271 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=42.17 E-value=15 Score=15.63 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=33.8 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 22104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) .+|++ -++..+..+...-+.|+.+||+.++.++++|++.+ ..+...|-| T Consensus 39 ~gLt~-~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v---------~~L~~~Glv 87 (155) T 3cdh_A 39 QGLRV-PEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIV---------DQMDARGLV 87 (155) T ss_dssp TTCCH-HHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHH---------HHHHHTTSE T ss_pred CCCCH-HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH---------HHHHHCCCE T ss_conf 29699-99999999985799699999999896998899999---------999968977 No 272 >2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A Probab=42.16 E-value=15 Score=15.63 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=6.0 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 46799997433787786 Q gi|254780805|r 155 QNDIGSIVGKSRSHVAN 171 (300) Q Consensus 155 ~~~lA~~~G~s~s~V~~ 171 (300) ..+||++.|.|++++.+ T Consensus 26 v~~IA~~aGvs~~tlY~ 42 (207) T 2vke_A 26 TRKLAQKLGIEQPTLYW 42 (207) T ss_dssp HHHHHHHHTCCHHHHHH T ss_pred HHHHHHHHCCCHHHHHH T ss_conf 99999997919769988 No 273 >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A Probab=41.98 E-value=16 Score=15.62 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=22.6 Q ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99852101-11046799997433787786565 Q gi|254780805|r 144 YEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..|.++. ..+..+||+.++.++++|+..+. T Consensus 11 i~~l~~~~~~v~~~~iA~~l~vs~~sv~~~l~ 42 (214) T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMK 42 (214) T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99997048977899999986899579999999 No 274 >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Probab=41.74 E-value=16 Score=15.59 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=27.5 Q ss_pred CCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 22104899999998521-0111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLIS-EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++- ++..+..|.. .-+.|+.+||+.+|.++++|++.+. T Consensus 49 ~gLt~~-q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~ 90 (166) T 3deu_A 49 LELTQT-HWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLD 90 (166) T ss_dssp TTCCHH-HHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 698999-999999999769897999999997989989999999 No 275 >2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A Probab=41.67 E-value=15 Score=15.67 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=21.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++..+.| .|-++||+..|.|++++.++.. T Consensus 17 ~~lf~~~G~~~~ti~~IA~~agvs~~tiY~~F~ 49 (186) T 2jj7_A 17 KKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 49 (186) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998591417799999986969889977878 No 276 >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A Probab=40.93 E-value=5.4 Score=18.55 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=15.2 Q ss_pred CCHHHHHHHHHHHHHCCCCCCC Q ss_conf 8988999999988631001550 Q gi|254780805|r 58 FESEGLEDLCQSIKSHGIIQPL 79 (300) Q Consensus 58 ~~~~~l~eLa~SI~~~G~lqPi 79 (300) .+...+..--.-+.+.|++..- T Consensus 37 ~s~~~v~~hL~~L~~aglv~~~ 58 (232) T 2qlz_A 37 VSSTAVAKHLKIMEREGVLQSY 58 (232) T ss_dssp CCHHHHHHHHHHHHHTTSEEEE T ss_pred CCHHHHHHHHHHHHHCCCEEEE T ss_conf 1988999999999868986998 No 277 >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3hlm_A* Probab=40.61 E-value=16 Score=15.48 Aligned_cols=36 Identities=3% Similarity=0.231 Sum_probs=20.5 Q ss_pred HHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC Q ss_conf 99999973987999717982289998589899999999837 Q gi|254780805|r 254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 254 e~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~ 294 (300) -++|.+..|.-+ . ..++|.+-.-+.++++++.+.++ T Consensus 362 ~~~L~~e~~V~~----~-~g~Ris~a~~~~~~i~~la~ai~ 397 (401) T 7aat_A 362 VERLTKEFSIYM----T-KDGRISVAGVASSNVGYLAHAIH 397 (401) T ss_dssp HHHHHHHHCEEC----C-TTCEEEGGGCCTTTHHHHHHHHH T ss_pred HHHHHHCCCEEE----C-CCCEEEECCCCHHHHHHHHHHHH T ss_conf 999998198894----7-98679853598878999999999 No 278 >2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3} Probab=40.58 E-value=16 Score=15.48 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=4.6 Q ss_pred HHHHHHHHHCCC Q ss_conf 999998863100 Q gi|254780805|r 64 EDLCQSIKSHGI 75 (300) Q Consensus 64 ~eLa~SI~~~G~ 75 (300) +.-..-+.++|. T Consensus 22 ~aa~~l~~~~G~ 33 (194) T 2q24_A 22 AAAVRVFSEEGL 33 (194) T ss_dssp HHHHHHHHHHCT T ss_pred HHHHHHHHHHCC T ss_conf 999999998696 No 279 >1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A Probab=40.56 E-value=16 Score=15.48 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHHHH Q ss_conf 99999998521011-104679999743-----378778656565435 Q gi|254780805|r 139 EEALGYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILKLP 179 (300) Q Consensus 139 e~A~~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~L~ 179 (300) ++=..+++++.+.. .||++|.+.+.. +++|||+-|+-+.+- T Consensus 5 ~Rq~~I~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATiSRDlkeL~~v 51 (149) T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLV 51 (149) T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCE T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCE T ss_conf 99999999998589788999999999869854089988889983988 No 280 >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea; HET: PMP; 2.30A {Thermococcus litoralis} Probab=40.48 E-value=16 Score=15.47 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=24.3 Q ss_pred HHHHHHHHHHHHCCEEE---EEC--CCCCEEEEEEEC--CHHHHHHHHHHHCC Q ss_conf 99999999997398799---971--798228999858--98999999998375 Q gi|254780805|r 250 LTDLEKKISSKVGLNIS---IKH--RNNKGQFCIKYE--TNEQLKIICSLLGE 295 (300) Q Consensus 250 i~~le~~L~~~lGtkV~---I~~--~~~kGkI~I~f~--s~eeLe~Il~kL~~ 295 (300) -.++.+.|-+.-|.-|. .-. ....+-|.|.|. +.++++.-+++|++ T Consensus 347 ~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~lRi~~~~~~~e~l~~al~rL~~ 399 (407) T 2zc0_A 347 GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAK 399 (407) T ss_dssp HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH T ss_conf 99999999997999999225527899989979999587999999999999999 No 281 >1aoy_A Arginine repressor; DNA-binding protein, expression regulation, DNA organization, winged helix; NMR {Escherichia coli K12} SCOP: a.4.5.3 Probab=40.39 E-value=16 Score=15.46 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=24.2 Q ss_pred HHHHHHHHHCCC-CHHHHHHHH---HH---HHHHHHHHHHHHHH Q ss_conf 999985210111-046799997---43---37877865656543 Q gi|254780805|r 142 LGYEQLISEYGY-TQNDIGSIV---GK---SRSHVANILRILKL 178 (300) Q Consensus 142 ~~~~~l~~~~~~-t~~~lA~~~---G~---s~s~V~~~LrLl~L 178 (300) .++++++.+..+ ||++|.+.| |. ++++||+.|+-+.+ T Consensus 12 ~~I~~lI~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eLg~ 55 (78) T 1aoy_A 12 KAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGA 55 (78) T ss_dssp HHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHHTC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEECHHHHHHHHHHHCC T ss_conf 99999998288567999999999829866529889999998098 No 282 >2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 Probab=40.12 E-value=17 Score=15.43 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=12.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-++||++.|.|++++.++. T Consensus 29 ~t~~~IA~~agvs~~tlY~~F 49 (202) T 2d6y_A 29 ARIDRIAAEARANKQLIYAYY 49 (202) T ss_dssp CCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 879999999790988996886 No 283 >2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3} Probab=39.94 E-value=17 Score=15.42 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=6.9 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-.+||+..|.|+++|.++ T Consensus 52 T~~~IA~~aGvs~~tlY~~ 70 (226) T 2pz9_A 52 RVDRIAKQARTSKERVYAY 70 (226) T ss_dssp CHHHHHHHTTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 8999999969387579788 No 284 >2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} Probab=39.91 E-value=17 Score=15.41 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.1 Q ss_pred HHHHHHHCCC Q ss_conf 9998863100 Q gi|254780805|r 66 LCQSIKSHGI 75 (300) Q Consensus 66 La~SI~~~G~ 75 (300) -.+-+.++|. T Consensus 25 A~~l~~~~G~ 34 (199) T 2rek_A 25 AAAEVARHGA 34 (199) T ss_dssp HHHHHHHHGG T ss_pred HHHHHHHHCC T ss_conf 9999998697 No 285 >1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Probab=39.71 E-value=17 Score=15.39 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=34.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 104899999998521011104679999743378778656565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) .+|..-|..++..+...++++..++..+|.|.++|+..++.. T Consensus 26 ~dp~~~a~~Ik~~l~~~~i~q~~~~~~~~~Sqs~is~~l~~~ 67 (194) T 1ic8_A 26 EDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKG 67 (194) T ss_dssp SCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSB T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 790999999999999828995335656677865402245689 No 286 >2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=39.64 E-value=17 Score=15.39 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=11.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||+..|.|++++.++. T Consensus 61 ~T~~~IA~~AgvS~~tlY~yF 81 (225) T 2id3_A 61 LDLGEIARRAGVGKTTVYRRW 81 (225) T ss_dssp CCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHCCCC T ss_conf 779999999790988871018 No 287 >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Probab=39.57 E-value=17 Score=15.38 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=17.9 Q ss_pred HHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC Q ss_conf 9999973987999717982289998589899999999837 Q gi|254780805|r 255 KKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 255 ~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~ 294 (300) ++|.+..|.-+ - . .|+|.+..-+.++++++.+.|. T Consensus 371 ~~L~~e~gV~~--~--~-g~Ri~~agl~~~~i~~la~ai~ 405 (412) T 1yaa_A 371 KRLEETHAVYL--V--A-SGRASIAGLNQGNVEYVAKAID 405 (412) T ss_dssp HHHHHHHCEEC--C--T-TSEEEGGGCCTTTHHHHHHHHH T ss_pred HHHHHHCCEEE--C--C-CCEEEECCCCHHHHHHHHHHHH T ss_conf 99998498898--8--9-8679852488888999999999 No 288 >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} Probab=39.54 E-value=17 Score=15.38 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=27.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++.+-. .+..+ .+.+.|+.+||+.+|.++++|++.+. T Consensus 34 ~lt~~q~~-iL~~i-~~~~~t~~~la~~~~~~~~tvs~~i~ 72 (144) T 3f3x_A 34 NLSYLDFS-ILKAT-SEEPRSMVYLANRYFVTQSAITAAVD 72 (144) T ss_dssp SCCHHHHH-HHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHH-HHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999-99999-91996999999998978868999999 No 289 >1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14 Probab=39.41 E-value=17 Score=15.36 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |.+..+||++.|.|..||.+.++ T Consensus 92 G~n~~eLArkY~LS~r~I~~Ii~ 114 (129) T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKAIR 114 (129) T ss_dssp SSCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99899999998978999999999 No 290 >3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} Probab=39.16 E-value=17 Score=15.34 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=17.1 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +|+.+.| .|..+||++.|.|++++.++. T Consensus 22 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~yF 52 (203) T 3b81_A 22 DIFIANGYENTTLAFIINKLGISKGALYHYF 52 (203) T ss_dssp HHHHHHCSTTCCHHHHHHHHTCCHHHHHTTC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 9999729241779999999790999997646 No 291 >3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans} Probab=39.05 E-value=17 Score=15.33 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=14.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||+..|.|++++.++. T Consensus 47 ~t~~~IA~~agvs~~tiY~yF 67 (217) T 3mvp_A 47 VTTNEIAKKADVSVGTLYAYF 67 (217) T ss_dssp CCHHHHHHHHTSCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 789999998890988999988 No 292 >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C- terminal domain, open alpha-beta structure.; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Probab=38.71 E-value=17 Score=15.30 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHCCEEEE---ECCCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 99999999973987999---71798228999858-9899999999837 Q gi|254780805|r 251 TDLEKKISSKVGLNISI---KHRNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I---~~~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ..+.+.|-+.-|.-|.= -.....|-|.|.|. +.|+++.-+++|. T Consensus 336 ~~~~~~Ll~~~gV~v~PG~~Fg~~~~~~vRis~a~~~e~l~eal~rl~ 383 (390) T 1d2f_A 336 NALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLI 383 (390) T ss_dssp HHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 999999998699999836231889998799997388999999999999 No 293 >1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Probab=38.69 E-value=5.3 Score=18.61 Aligned_cols=21 Identities=14% Similarity=0.427 Sum_probs=13.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) +|++++|..+|.||.+|++.| T Consensus 165 ~t~~~iA~~lg~sr~tvsr~l 185 (213) T 1o5l_A 165 VTLEELSRLFGCARPALSRVF 185 (213) T ss_dssp --------------------- T ss_pred CCHHHHHHHHCCCHHHHHHHH T ss_conf 689999999798999999999 No 294 >3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* Probab=38.64 E-value=17 Score=15.37 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=10.2 Q ss_pred HHHCCCCCCCCCCCCCHHHH Q ss_conf 89823578999876898899 Q gi|254780805|r 44 IHSIVPNPHNPRNYFESEGL 63 (300) Q Consensus 44 i~~i~~~p~~pR~~~~~~~l 63 (300) -+.|.-+-+.|-..+++..| T Consensus 30 ~~~I~~g~l~pG~~L~e~~L 49 (226) T 3dbw_A 30 KEMILNHELKLGEKLNVREL 49 (226) T ss_dssp HHHHHTTSSCTTCBCCHHHH T ss_pred HHHHHCCCCCCCCCCCHHHH T ss_conf 99998199999099699999 No 295 >2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A* Probab=38.50 E-value=18 Score=15.27 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 4899999998521011104679999-7433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) +-|.|.-++..+..++++|.--|+. +|+|+.+++.+|+ T Consensus 9 t~eI~~~i~~eL~~~~I~Q~~Fak~VL~rsQGtlSdLLr 47 (93) T 2o4a_A 9 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILR 47 (93) T ss_dssp CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHH T ss_conf 599999999999985764999999998107058999983 No 296 >3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens} Probab=38.39 E-value=18 Score=15.26 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=11.4 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||++.|.|++++.++. T Consensus 30 s~~~IA~~agvs~~tlY~yF 49 (206) T 3dew_A 30 SIRELAQAAGASISMISYHF 49 (206) T ss_dssp CHHHHHHHHTCCHHHHHHHS T ss_pred CHHHHHHHHCCCHHHHHHHC T ss_conf 89999999695988998881 No 297 >3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V} Probab=37.90 E-value=17 Score=15.39 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=23.2 Q ss_pred HHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998521011---1046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+...|+.+.| .|-.+||+..|.|++++.++.. T Consensus 19 ~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 54 (177) T 3kkc_A 19 NAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYE 54 (177) T ss_dssp HHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCS T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999999988697407699999997978777436589 No 298 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=37.52 E-value=18 Score=15.17 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=29.0 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++.+ +..+..+...-++|+.+||..++.++++|++.+. T Consensus 46 glt~~q-~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~ 85 (162) T 2fa5_A 46 GMAIPE-WRVITILALYPGSSASEVSDRTAMDKVAVSRAVA 85 (162) T ss_dssp CCCHHH-HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 979999-9999999867998999999997878715999999 No 299 >1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A Probab=37.50 E-value=18 Score=15.17 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=29.6 Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 4310221048999999985210111046799997433787786565 Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 129 N~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |.+..|.++-+.-- .| ..-|+|..+|+...|.|.++++|.|. T Consensus 3 ~~~~~DWh~adI~A---aL-~krG~sLa~lsr~~Gls~~tl~nal~ 44 (74) T 1neq_A 3 NEKARDWHRADVIA---GL-KKRKLSLSALSRQFGYAPTTLANALE 44 (74) T ss_dssp CSSSSSCCHHHHHH---HH-HTTSCCHHHHHHHHSSCHHHHHHTTT T ss_pred CCCCCCCCHHHHHH---HH-HHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 76578989999999---99-99689699999990998899999882 No 300 >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Probab=37.49 E-value=18 Score=15.17 Aligned_cols=50 Identities=10% Similarity=-0.002 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHCCEEEE---ECCCCCEEEEEEEC-CHHHHH-------HHHHHHCCCCC Q ss_conf 8999999999973987999---71798228999858-989999-------99998375645 Q gi|254780805|r 249 YLTDLEKKISSKVGLNISI---KHRNNKGQFCIKYE-TNEQLK-------IICSLLGENDF 298 (300) Q Consensus 249 ~i~~le~~L~~~lGtkV~I---~~~~~kGkI~I~f~-s~eeLe-------~Il~kL~~~~~ 298 (300) +-.++...|.+.-|.-|.= -...+.|-+.|.|. +.|+++ .+++.|++.++ T Consensus 338 d~~~~~~~ll~~~gV~v~pG~~Fg~~~~~~~Ris~~~~~e~i~eai~rl~~~l~~lk~k~~ 398 (399) T 1c7n_A 338 DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSSVIQESLERLNKALKDLKNRHL 398 (399) T ss_dssp CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC---- T ss_pred CHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999869999966323088999879999827999999999999999999875006 No 301 >3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B} Probab=37.32 E-value=18 Score=15.15 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=5.0 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 978999999999973 Q gi|254780805|r 247 EKYLTDLEKKISSKV 261 (300) Q Consensus 247 ~~~i~~le~~L~~~l 261 (300) ++.+..+-+-|.+.+ T Consensus 279 ~~~~~~f~d~l~e~l 293 (306) T 3hhg_A 279 NLRLRVFLDFLVEEL 293 (306) T ss_dssp CHHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHHHHH T ss_conf 999999999999985 No 302 >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.19A {Helicobacter pylori 26695} Probab=37.17 E-value=18 Score=15.14 Aligned_cols=44 Identities=9% Similarity=0.040 Sum_probs=24.8 Q ss_pred HHHHHHHHHHCCEEEE--EC---CCCCEEEEEEE-CCHHHHHHHHHHHCC Q ss_conf 9999999973987999--71---79822899985-898999999998375 Q gi|254780805|r 252 DLEKKISSKVGLNISI--KH---RNNKGQFCIKY-ETNEQLKIICSLLGE 295 (300) Q Consensus 252 ~le~~L~~~lGtkV~I--~~---~~~kGkI~I~f-~s~eeLe~Il~kL~~ 295 (300) ++.+.|-+.-|.-|.= -. ..+.|-|.|.| .+.++|+.-+++|++ T Consensus 321 ~~~~~Ll~e~gV~v~PG~~Fg~~~~g~~~iRis~~~~~e~l~~al~rl~~ 370 (376) T 3ezs_A 321 NFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376) T ss_dssp HHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEECCHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 99999998599999810442899888996999971889999999999999 No 303 >3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A Probab=37.00 E-value=18 Score=15.12 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=18.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-.+||++.|.|++++.++. T Consensus 18 ~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F 49 (195) T 3frq_A 18 TVVLKRCGPIEFTLSGVAKEVGLSRAALIQRF 49 (195) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHC T ss_conf 99999759130779999998789822178739 No 304 >2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3} Probab=36.99 E-value=18 Score=15.12 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=10.9 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||+..|.|++++.++. T Consensus 31 si~~Ia~~agvs~~t~Y~~F 50 (193) T 2dg8_A 31 SHRRIAQRAGVPLGSMTYHF 50 (193) T ss_dssp CHHHHHHHHTSCTHHHHHHC T ss_pred CHHHHHHHHCCCHHHHHHHC T ss_conf 69999999890999998780 No 305 >3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} Probab=36.98 E-value=7 Score=17.82 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |..++|+.+|.|+++|.+.++.|. T Consensus 37 s~~~La~~~~VSr~tVr~Al~~L~ 60 (126) T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126) T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899999996989899999999999 No 306 >2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1 Probab=36.69 E-value=19 Score=15.09 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=11.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||++.|.|++++.++. T Consensus 33 ~s~~~Ia~~agvs~~t~Y~~F 53 (192) T 2fq4_A 33 VTVDKIAERAKVSKATIYKWW 53 (192) T ss_dssp CCHHHHHHHHTCCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 779999999891998885347 No 307 >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Probab=36.62 E-value=19 Score=15.08 Aligned_cols=46 Identities=24% Similarity=0.134 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHCCEEEE--E-CCCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 8999999999973987999--7-1798228999858-9899999999837 Q gi|254780805|r 249 YLTDLEKKISSKVGLNISI--K-HRNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 249 ~i~~le~~L~~~lGtkV~I--~-~~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) +-.++...|.+..|.-|.= . ...+.|-|.|.|. +.++++.-+++|+ T Consensus 334 ~~~~~~~~Ll~~~gV~v~pG~~F~~~~~~~vRis~~~~~e~i~eal~rl~ 383 (391) T 3dzz_A 334 NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKELVIDGMQRLK 383 (391) T ss_dssp CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 99999999998399999664320889999799997189999999999999 No 308 >1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A* Probab=36.59 E-value=19 Score=15.08 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=10.3 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |..+||+..|.|++++.++. T Consensus 46 ti~~IA~~agvs~~tlY~yF 65 (216) T 1t56_A 46 SVDDLAKGAGISRPTFYFYF 65 (216) T ss_dssp CHHHHHHHHTCCHHHHHHHC T ss_pred CHHHHHHHCCCCHHHHHHHC T ss_conf 89999988399999995763 No 309 >2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus} Probab=36.59 E-value=19 Score=15.08 Aligned_cols=53 Identities=17% Similarity=0.344 Sum_probs=33.9 Q ss_pred HHHHHHHHCCCCCHHHHHHHHH--HHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5666543102210489999999--85210111---046799997433787786565654 Q gi|254780805|r 124 IAIVENVQRKDLNPLEEALGYE--QLISEYGY---TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 124 ~~l~EN~~R~dl~p~e~A~~~~--~l~~~~~~---t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) -.|.+.+. -.+++-|+..|.. .-+++.|| +.+++|..+|.+...|.+.|..+. T Consensus 16 e~L~~Qi~-l~l~~~e~~Ia~~iI~~LD~~GyL~~~~eeia~~l~~~~~~ve~vL~~lQ 73 (76) T 2k9l_A 16 EELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76) T ss_dssp HHHHHHHH-HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHHHHHC-CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999977-77999999999999973597888188999999997909999999999986 No 310 >1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7 Probab=36.55 E-value=19 Score=15.08 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=39.3 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHH Q ss_conf 4899999998521011104679999-74337877865656543589999876421016777776401004 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDP 205 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~~ 205 (300) .-|.|.-++..+..++++|.--|+. +|+|+.+++.+|+=-+=| -.....|.-.+-.-+--+.+++. T Consensus 23 t~~i~~~v~~eL~~~~I~Q~~Fa~~vl~rsQgtlsdLL~~PKpp---~~~~~~gre~f~RM~~wL~~pe~ 89 (141) T 1yse_A 23 SSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDP---KTASQSLLVNLRAMQNFLQLPEA 89 (141) T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCG---GGCCHHHHHHHHHHHHHHHSCHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHCCCHH T ss_conf 69999999999998487799999999822818899998589985---66618778999999999828188 No 311 >1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A Probab=36.45 E-value=19 Score=15.07 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=25.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 110467999974337877865656-543589999876421 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRI-LKLPSSVREMIRKEE 190 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l~~~~ 190 (300) .++.+++|+.+|.|++++++..+- ..+++ .+.+..-. T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~~~g~s~--~~~i~~~R 64 (129) T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKKETGHSL--GQYIRSRK 64 (129) T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHHHSSCH--HHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCH--HHHHHHHH T ss_conf 999999999989299999999999869094--47784379 No 312 >1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A Probab=36.00 E-value=19 Score=15.02 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=11.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-++||++.|.|+++|.++. T Consensus 30 ~s~~~Ia~~agvs~~tiY~~F 50 (215) T 1ui5_A 30 TTLSEIVAHAGVTKGALYFHF 50 (215) T ss_dssp CCHHHHHHHHTCCHHHHHHHC T ss_pred CCHHHHHHHHCCCCCHHHHHC T ss_conf 879999998687821187616 No 313 >3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} Probab=35.97 E-value=19 Score=15.02 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=16.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|.++||++.|.|++++.++. T Consensus 28 ~~s~~~IA~~agvs~~~~Y~~F 49 (194) T 3dpj_A 28 QTSFVDISAAVGISRGNFYYHF 49 (194) T ss_dssp TCCHHHHHHHHTCCHHHHHHHC T ss_pred CCCHHHHHHHHCCCCCHHHHHC T ss_conf 1889999998682912688875 No 314 >3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus} Probab=35.76 E-value=19 Score=15.00 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=21.1 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---104679999743378778656 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +..+++.+.| .|-.+||+..|.|++++.++. T Consensus 12 aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170) T 3egq_A 12 AALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHF 45 (170) T ss_dssp HHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHC T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHC T ss_conf 9999999749240679999998489968706428 No 315 >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Probab=35.60 E-value=18 Score=15.15 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=9.3 Q ss_pred CCHHHHHHHHHHH-HHHHHHH Q ss_conf 1046799997433-7877865 Q gi|254780805|r 153 YTQNDIGSIVGKS-RSHVANI 172 (300) Q Consensus 153 ~t~~~lA~~~G~s-~s~V~~~ 172 (300) +|+.++|..+|.| +.+|++. T Consensus 170 ~t~~~lA~~lg~s~r~~vsR~ 190 (238) T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRI 190 (238) T ss_dssp CCHHHHHHHTTCCCHHHHHHH T ss_pred CCHHHHHHHHCCCCHHHHHHH T ss_conf 679999999689818899999 No 316 >3if2_A Aminotransferase; YP_265399.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Probab=35.55 E-value=19 Score=14.98 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHCCEEEE-----------ECCCCCEEEEEEEC-CHHHHHHHHHHH Q ss_conf 999999999973987999-----------71798228999858-989999999983 Q gi|254780805|r 250 LTDLEKKISSKVGLNISI-----------KHRNNKGQFCIKYE-TNEQLKIICSLL 293 (300) Q Consensus 250 i~~le~~L~~~lGtkV~I-----------~~~~~kGkI~I~f~-s~eeLe~Il~kL 293 (300) -.++.+.|.+. |.-|.- ......+-|.|.|. +.|+++.-+++| T Consensus 379 ~~~~~~~l~~~-gV~v~pg~~F~~~~~~~~~~~~~~~vRis~~~~~e~l~~al~rl 433 (444) T 3if2_A 379 TLDLYERLKAK-GTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVI 433 (444) T ss_dssp HHHHHHHHHHT-TEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHH T ss_pred HHHHHHHHHHC-CEEEEECHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH T ss_conf 99999999978-92998442206775444556779979999679999999999999 No 317 >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Probab=35.53 E-value=20 Score=14.97 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=22.2 Q ss_pred HHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 9999999973987999717--98228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++..+|-+.-|.-|. ... ...|-|.|.|. +.++++.-+++|+ T Consensus 339 ~~~~~ll~~~gV~v~-pG~~F~~~g~iRis~~~~~e~l~~al~rl~ 383 (389) T 1o4s_A 339 KFCERLLEEKKVALV-PGSAFLKPGFVRLSFATSIERLTEALDRIE 383 (389) T ss_dssp HHHHHHHHHHCEECE-EGGGGTCTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEE-ECCCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 999999996999999-573358999899996398999999999999 No 318 >2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa} Probab=35.40 E-value=20 Score=14.96 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=10.9 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||+..|.|++++.++. T Consensus 33 si~~Ia~~agvs~~tiY~~F 52 (210) T 2wui_A 33 AMADLADAAGVSRGAVYGHY 52 (210) T ss_dssp CHHHHHHHHTSCHHHHHHHC T ss_pred CHHHHHHHHCCCCCCCCCCC T ss_conf 59999998787977444478 No 319 >3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A Probab=35.38 E-value=20 Score=14.96 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=14.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|-.+||++.|.|++++.++. T Consensus 37 ~~ti~~IA~~agvs~~t~Y~yF 58 (206) T 3kz9_A 37 RGGHADIAEIAQVSVATVFNYF 58 (206) T ss_dssp SCCHHHHHHHHTSCHHHHHHHC T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 1779999998790998996980 No 320 >3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP} Probab=35.19 E-value=20 Score=14.94 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=11.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||++.|.|++++.++. T Consensus 35 ~s~~~IA~~agvs~~t~Y~~F 55 (203) T 3f1b_A 35 TSMDAIAAKAEISKPMLYLYY 55 (203) T ss_dssp CCHHHHHHHTTSCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 879999999890988887881 No 321 >2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP} Probab=35.16 E-value=20 Score=14.94 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=14.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|-.+||++.|.|++++.++. T Consensus 30 ~~s~~~Ia~~agvs~~t~Y~~F 51 (194) T 2nx4_A 30 AANMRDIATEAGYTNGALSHYF 51 (194) T ss_dssp TCCHHHHHHHHTCCHHHHHHHC T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 1659999998790999994306 No 322 >2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus} Probab=34.82 E-value=20 Score=14.90 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=31.8 Q ss_pred CCCHHHHHHHHH--HHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHHH Q ss_conf 210489999999--85210111---04679999743378778656565-4358 Q gi|254780805|r 134 DLNPLEEALGYE--QLISEYGY---TQNDIGSIVGKSRSHVANILRIL-KLPS 180 (300) Q Consensus 134 dl~p~e~A~~~~--~l~~~~~~---t~~~lA~~~G~s~s~V~~~LrLl-~L~~ 180 (300) ++++.|...|.. ..+++.|| +.+++|..+|.+...|.+.+..+ .+.| T Consensus 16 ~l~~~e~~ia~~iI~~LD~~GyL~~~~~ei~~~l~~~~~~ie~~l~~lq~leP 68 (130) T 2k9m_A 16 ELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLRLEP 68 (130) T ss_dssp HCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHHTSSS T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCC T ss_conf 99999999999999716988862788899998808986689999999983599 No 323 >3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1} Probab=34.81 E-value=20 Score=14.90 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=18.6 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-.+||++.|.|++++.++. T Consensus 20 ~~l~~~~G~~~~si~~Ia~~agvs~~tiY~yF 51 (196) T 3col_A 20 AAIILAEGPAGVSTTKVAKRVGIAQSNVYLYF 51 (196) T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHC T ss_conf 99999759140779999999691998885876 No 324 >2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid} Probab=34.76 E-value=20 Score=14.90 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=21.4 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 521011104679999743378778656 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) |.. -|+|..+||..+|.|-.-|.+|| T Consensus 27 La~-~gysvqqIa~~LGVsvrKv~~YL 52 (55) T 2x48_A 27 LAK-MGYTVQQIANALGVSERKVRRYL 52 (55) T ss_dssp HHH-TTCCHHHHHHHHTSCHHHHHHHH T ss_pred HHH-CCCCHHHHHHHHCHHHHHHHHHH T ss_conf 998-48729999988461199999987 No 325 >3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A Probab=34.72 E-value=20 Score=14.89 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=5.0 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999886310 Q gi|254780805|r 63 LEDLCQSIKSHG 74 (300) Q Consensus 63 l~eLa~SI~~~G 74 (300) ++....-+.++| T Consensus 34 l~aa~~l~~~~G 45 (217) T 3hta_A 34 IDAAIRVVGQKG 45 (217) T ss_dssp HHHHHHHHHHHT T ss_pred HHHHHHHHHHHC T ss_conf 999999999859 No 326 >1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 Probab=34.62 E-value=20 Score=14.90 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+--|+|.. ..+...++|..++|+.+.+||-.|.+||. T Consensus 6 L~~~e~aql--DVm~~L~~slhemaR~i~rSR~~ir~Yl~ 43 (51) T 1tc3_C 6 LSDTERAQL--DVMKLLNVSLHEMSRKISRSRHCIRVYLK 43 (51) T ss_dssp CCHHHHHHH--HHHHHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 307899988--99999487699999999885999999956 No 327 >1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5 Probab=34.50 E-value=13 Score=16.11 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656565435 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) .++..++|+.||.|..||.+..+. -|| T Consensus 2 ~vNk~qlA~~fgVS~~TI~~W~~~-GmP 28 (68) T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ-GMP 28 (68) T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT-TCC T ss_pred CCCHHHHHHHHCCCHHHHHHHHHC-CCC T ss_conf 558999999979888999999987-999 No 328 >2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum} Probab=34.35 E-value=20 Score=14.85 Aligned_cols=22 Identities=9% Similarity=0.173 Sum_probs=15.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|..+||+..|.|++++.+|. T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~yF 53 (197) T 2hyt_A 32 DTSMDDLTAQASLTRGALYHHF 53 (197) T ss_dssp TCCHHHHHHHHTCCTTHHHHHH T ss_pred CCCHHHHHHHHCCCCCHHHHCC T ss_conf 1879999998385924065508 No 329 >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence of substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Probab=34.26 E-value=20 Score=14.84 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHCCEEEE--EC-CCCCEEEEEEE-CCHHHHHHHHHHHC Q ss_conf 99999999973987999--71-79822899985-89899999999837 Q gi|254780805|r 251 TDLEKKISSKVGLNISI--KH-RNNKGQFCIKY-ETNEQLKIICSLLG 294 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I--~~-~~~kGkI~I~f-~s~eeLe~Il~kL~ 294 (300) .++.++|-+.-|.-|.= .. ....|-+.|.| .+.|+++.-+++|. T Consensus 333 ~~l~~~Ll~e~gV~v~pG~~F~~~~~~~iRis~~~~~e~i~~al~rL~ 380 (389) T 1gd9_A 333 KKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRME 380 (389) T ss_dssp HHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCEEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 999999998599999811452989999799996499999999999999 No 330 >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Probab=34.25 E-value=20 Score=14.84 Aligned_cols=43 Identities=21% Similarity=0.161 Sum_probs=28.9 Q ss_pred CCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 22104899999998521--011104679999743378778656565 Q gi|254780805|r 133 KDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -+|++.+-. .+..+-. ...+|+.+||+.++.++++|++.++-| T Consensus 33 ~~lt~~q~~-iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~L 77 (127) T 2frh_A 33 FSISFEEFA-VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKIL 77 (127) T ss_dssp TCCCHHHHH-HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHH T ss_pred CCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 597999999-999998289998789999999798873699999999 No 331 >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: PLP; 2.33A {Pyrococcus furiosus dsm 3638} SCOP: c.67.1.1 Probab=34.10 E-value=21 Score=14.83 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=20.2 Q ss_pred HHHHHHHHHHCCEEEE-E--CCCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 9999999973987999-7--1798228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISI-K--HRNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I-~--~~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++..++-+.-|.-|.= . ...+.|-|.|.|. +.++|+.-+++|. T Consensus 351 ~~~~~ll~~~gV~v~pG~~Fg~~~~~~vRis~~~~~e~l~eal~rl~ 397 (406) T 1xi9_A 351 EFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMDRFE 397 (406) T ss_dssp HHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 99999999699999847332889979699996489999999999999 No 332 >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphate, external aldimine, chloroplast, plastid; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Probab=34.00 E-value=21 Score=14.82 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=13.2 Q ss_pred CCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 98228999858-9899999999837 Q gi|254780805|r 271 NNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 271 ~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) .+.|-|.|.|. +.|+++.-+++|. T Consensus 398 ~~~~~iRis~~~~~e~l~eal~Ri~ 422 (432) T 3ei9_A 398 GGEGFVRVSAFGHRENILEACRRFK 422 (432) T ss_dssp GGTTEEEEECCSCHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 9989799997189999999999999 No 333 >3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822} Probab=33.83 E-value=17 Score=15.30 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=8.4 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-++||++.|.|++++.++ T Consensus 36 t~~~Ia~~agvs~~tlY~~ 54 (203) T 3ccy_A 36 SIGDIARACECSKSRLYHY 54 (203) T ss_dssp CHHHHHHHTTCCGGGGTTT T ss_pred CHHHHHHHHCCCCCCCHHC T ss_conf 8999999858986773024 No 334 >2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5} Probab=33.48 E-value=21 Score=14.76 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=10.5 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||++.|.|++++.++. T Consensus 24 t~~~Ia~~agvs~~tiY~~F 43 (179) T 2eh3_A 24 SVEEIVKRANLSKGAFYFHF 43 (179) T ss_dssp CHHHHHHHHTCCHHHHHHHC T ss_pred CHHHHHHHHCCCCCCHHHHC T ss_conf 69999998784965214428 No 335 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=33.20 E-value=21 Score=14.74 Aligned_cols=41 Identities=20% Similarity=-0.001 Sum_probs=29.1 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++-+-. .+.-+-..-+.|+.+||+.++.++++|++.+. T Consensus 44 ~gLt~~q~~-iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~ 84 (207) T 2fxa_A 44 YDLNINEHH-ILWIAYQLNGASISEIAKFGVMHVSTAFNFSK 84 (207) T ss_dssp GTCCHHHHH-HHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 799999999-99999976994999999998869879999999 No 336 >3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ... Probab=33.00 E-value=21 Score=14.72 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=17.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|-.+||+..|.|++++.++.. T Consensus 22 ~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194) T 3bqz_B 22 ATTTGEIVKLSESSKGNLYYHFK 44 (194) T ss_dssp TCCHHHHHHHTTCCHHHHHHHTS T ss_pred CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 06799999997909998814378 No 337 >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Probab=32.96 E-value=21 Score=14.71 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=12.2 Q ss_pred EEEEEEECCHHHHHHHHHHHC Q ss_conf 289998589899999999837 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300) |+|.+-.-+.++++++.+.|+ T Consensus 385 ~Ris~a~l~~~~i~~~a~aI~ 405 (412) T 1ajs_A 385 GRINMCGLTTKNLDYVATSIH 405 (412) T ss_dssp SEEEGGGCCTTTHHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHH T ss_conf 648960398888999999999 No 338 >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Salmonella typhimurium} Probab=32.81 E-value=22 Score=14.69 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=14.8 Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 8228999858-98999999998375 Q gi|254780805|r 272 NKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 272 ~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) ..+-+.|.|. +.|+++.-+++|.+ T Consensus 384 ~~~~~Ris~~~~~e~i~~~l~rL~~ 408 (417) T 3g7q_A 384 THQCMRMNYVPEPDKIEAGVKILAE 408 (417) T ss_dssp GGGEEEEESCSCHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 7997999955999999999999999 No 339 >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Probab=32.74 E-value=22 Score=14.69 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=21.1 Q ss_pred HHHHHHHHHHCCEEEE--E-CCCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 9999999973987999--7-1798228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISI--K-HRNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I--~-~~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++..+|-+.-|.-|.= . ...+.|-|.|.|. +.|+|+.-+++|. T Consensus 346 ~~~~~ll~~~gV~v~pG~~F~~~~~~~iRi~~~~~~e~l~~al~rl~ 392 (412) T 2x5d_A 346 EFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIK 392 (412) T ss_dssp HHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEECCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 99999998599999806354889999799996399999999999999 No 340 >2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP} Probab=32.73 E-value=22 Score=14.69 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=6.0 Q ss_pred HHHHHHHHHHCCC Q ss_conf 9999998863100 Q gi|254780805|r 63 LEDLCQSIKSHGI 75 (300) Q Consensus 63 l~eLa~SI~~~G~ 75 (300) ++.-..-+.++|. T Consensus 23 l~aa~~l~~~~G~ 35 (207) T 2rae_A 23 STVGIELFTEQGF 35 (207) T ss_dssp HHHHHHHHHHHCT T ss_pred HHHHHHHHHHHCC T ss_conf 9999999997291 No 341 >2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Probab=32.73 E-value=14 Score=16.00 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=11.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 56543589999876421 Q gi|254780805|r 174 RILKLPSSVREMIRKEE 190 (300) Q Consensus 174 rLl~L~~~i~~~l~~~~ 190 (300) .+-.||..++..+..-. T Consensus 96 d~~~lp~~~~~~i~~~e 112 (227) T 2vg0_A 96 DLGLIGEEPARRLRGAV 112 (227) T ss_dssp CGGGSCHHHHHHHHHHH T ss_pred ECCCCCHHHHHHHHHHH T ss_conf 06657868999999998 No 342 >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... Probab=32.37 E-value=22 Score=14.65 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=22.4 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101-11046799997433787786565 Q gi|254780805|r 143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..|.++. ..+..+||+.+|.++++|+..++ T Consensus 14 ~Iy~L~e~~~~v~~~~iA~~L~vs~~svt~~l~ 46 (226) T 2qq9_A 14 TIYELEEEGVTPLRARIAERLEQSGPTVSQTVA 46 (226) T ss_dssp HHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999649965199999996899179999999 No 343 >3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A Probab=32.31 E-value=22 Score=14.64 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=12.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 35 ~si~~Ia~~agvs~~t~Y~~F 55 (220) T 3lhq_A 35 TSLAEIANAAGVTRGAIYWHF 55 (220) T ss_dssp CCHHHHHHHHTCCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 659999999793988999886 No 344 >3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3} Probab=32.14 E-value=22 Score=14.62 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=15.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|-++||++.|.|+++|.++. T Consensus 55 ~~T~~~IA~~aGvs~~tiY~yF 76 (221) T 3g7r_A 55 SVGIDRITAEAQVTRATLYRHF 76 (221) T ss_dssp TSCHHHHHHHHTCCHHHHHHHC T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 0879999999891998999883 No 345 >1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1 Probab=31.93 E-value=1.7 Score=21.72 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 56543589999876421 Q gi|254780805|r 174 RILKLPSSVREMIRKEE 190 (300) Q Consensus 174 rLl~L~~~i~~~l~~~~ 190 (300) ++..||+.+++.+..-. T Consensus 115 ~~~~lp~~l~~~i~~~e 131 (249) T 1f75_A 115 FIDDLPDHTKKAVLEAK 131 (249) T ss_dssp CGGGSCHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 23447778888889999 No 346 >2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A Probab=31.84 E-value=22 Score=14.59 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=12.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 28 ~t~~~IA~~agvs~~~lY~~F 48 (192) T 2zcm_A 28 TTLDDISKSVNIKKASLYYHY 48 (192) T ss_dssp CCHHHHHHHTTCCHHHHHHHT T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 779999998890988997887 No 347 >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, lyase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Probab=31.82 E-value=22 Score=14.59 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=18.2 Q ss_pred CCEEEEEEEC-CHHHHHHHHHHHCCC Q ss_conf 8228999858-989999999983756 Q gi|254780805|r 272 NKGQFCIKYE-TNEQLKIICSLLGEN 296 (300) Q Consensus 272 ~kGkI~I~f~-s~eeLe~Il~kL~~~ 296 (300) ..|-|.|.|. +.++++..+++|++- T Consensus 393 ~~~~iRis~~~~~e~l~~a~~rL~~~ 418 (422) T 3fvs_A 393 FDHYIRFCFVKDEATLQAMDEKLRKW 418 (422) T ss_dssp SCSEEEEECCCCHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHH T ss_conf 79979999648999999999999999 No 348 >3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str} Probab=31.81 E-value=22 Score=14.59 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=4.8 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999886310 Q gi|254780805|r 63 LEDLCQSIKSHG 74 (300) Q Consensus 63 l~eLa~SI~~~G 74 (300) ++.-..-+.++| T Consensus 21 l~aA~~lf~~~G 32 (221) T 3c2b_A 21 LDQALRLLVEGG 32 (221) T ss_dssp HHHHHHHHHHHC T ss_pred HHHHHHHHHHHC T ss_conf 999999999759 No 349 >1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A* Probab=31.78 E-value=22 Score=14.59 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=12.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-++||++.|.|+++|.++. T Consensus 39 ~si~~IA~~agvs~~tiY~yF 59 (212) T 1pb6_A 39 TRLEQIAELAGVSKTNLLYYF 59 (212) T ss_dssp CCHHHHHHHTTSCHHHHHHHS T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 889999999791987897877 No 350 >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} Probab=31.59 E-value=23 Score=14.57 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=30.0 Q ss_pred HHCCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 31022104899999998521--0111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+.+|++.+ +..+..|.. .-++|+.+||+.+|.+++++++.+. T Consensus 34 ~~~~glt~~q-~~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~ 79 (148) T 3jw4_A 34 LAELGLNSQQ-GRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQ 79 (148) T ss_dssp HHHTTCCHHH-HHHHHHHHHHTTTCCCHHHHHHC------CHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8775989999-999999993799993999999998977858999999 No 351 >2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor} Probab=31.48 E-value=23 Score=14.56 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=8.9 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |..+||+..|.|+++|.++ T Consensus 45 T~~~IA~~aGvs~~tlY~~ 63 (231) T 2zcx_A 45 TLTDIAATVGMHKSALLRY 63 (231) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999979198899787 No 352 >3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170} Probab=31.32 E-value=23 Score=14.54 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=6.7 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVAN 171 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~ 171 (300) |-.+||+..|.|++++.+ T Consensus 39 si~~IA~~agvs~~tlY~ 56 (208) T 3cwr_A 39 TMEGVASEAGIAKKTLYR 56 (208) T ss_dssp CHHHHHHHHTCCHHHHHH T ss_pred CHHHHHHHHCCCCCCCCC T ss_conf 799999994899664035 No 353 >1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=31.30 E-value=23 Score=14.54 Aligned_cols=21 Identities=29% Similarity=0.162 Sum_probs=13.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||+..|.|++++.++. T Consensus 33 ~t~~~Ia~~agvs~~tlY~~F 53 (205) T 1rkt_A 33 TTMKDVVEESGFSRGGVYLYF 53 (205) T ss_dssp CCHHHHHHHHTSCHHHHHTTC T ss_pred CCHHHHHHHHCCCCCCCCCCC T ss_conf 879999998689857411578 No 354 >2dou_A Probable N-succinyldiaminopimelate aminotransferase; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus HB8} Probab=31.07 E-value=23 Score=14.51 Aligned_cols=43 Identities=16% Similarity=0.211 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHCCEEEEE-----CCCCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 9999999999739879997-----1798228999858-98999999998375 Q gi|254780805|r 250 LTDLEKKISSKVGLNISIK-----HRNNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 250 i~~le~~L~~~lGtkV~I~-----~~~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) -.++...|.+. | |-|. ...++|-+.|.|. +.++++.-+++|+. T Consensus 325 ~~~~~~~l~~~-g--V~v~pg~~F~~~~~~~iRis~~~~~e~i~~al~rl~~ 373 (376) T 2dou_A 325 DLEFGLRLVER-G--VALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIRE 373 (376) T ss_dssp HHHHHHHHHHT-T--EECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHC-C--EEEEECHHCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 99999999979-9--7998351118999997999973889999999999999 No 355 >2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=30.94 E-value=23 Score=14.50 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=13.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||+..|.|++++.++. T Consensus 28 ~t~~~Ia~~agvs~~t~y~~F 48 (197) T 2gen_A 28 TTIEMIRDRSGASIGSLYHHF 48 (197) T ss_dssp CCHHHHHHHHCCCHHHHHHHT T ss_pred CCHHHHHHHHCCCCCHHHHCC T ss_conf 779999998583921134507 No 356 >3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP} Probab=30.76 E-value=23 Score=14.48 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=20.0 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---104679999743378778656 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) +++.+.| .|..+||++.|.|++++.++. T Consensus 23 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 53 (198) T 3cjd_A 23 AQIEAEGLASLRARELARQADCAVGAIYTHF 53 (198) T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHHHC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCHHHHCC T ss_conf 9999709340579999998288932102307 No 357 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=30.72 E-value=23 Score=14.47 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=30.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+|++-+-. .+..+.+.-+.|+.+||+.+|.++++|++.+. T Consensus 33 ~~glt~~q~~-vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~ 74 (140) T 2nnn_A 33 GNGLTPTQWA-ALVRLGETGPCPQNQLGRLTAMDAATIKGVVE 74 (140) T ss_dssp SSCCCHHHHH-HHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH T ss_conf 6898999999-99999987990999999987857352999999 No 358 >2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A* Probab=30.67 E-value=23 Score=14.47 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=13.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|.++||+..|.|++++.++. T Consensus 32 ~s~~~Ia~~agvs~~tiY~~F 52 (210) T 2xdn_A 32 TTLADIAELAGVTRGAIYWHF 52 (210) T ss_dssp CCHHHHHHHHTCCTTHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 779999999792988998886 No 359 >3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3} Probab=30.64 E-value=23 Score=14.47 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=11.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||++.|.|++++.++. T Consensus 64 ~ti~~IA~~aGvS~~tlY~yF 84 (229) T 3bni_A 64 LSTRAVALRADVPIGSVYRFF 84 (229) T ss_dssp CCHHHHHHHHTCCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 679999999596999999986 No 360 >3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406} Probab=30.28 E-value=24 Score=14.43 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=10.4 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||+..|.|++++.++. T Consensus 33 s~~~IA~~aGvs~~tlY~yF 52 (216) T 3f0c_A 33 TMNEIASDVGMGKASLYYYF 52 (216) T ss_dssp CHHHHHHHHTCCHHHHHHHC T ss_pred CHHHHHHHHCCCHHHHHHHC T ss_conf 89999998598852798757 No 361 >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis W83} Probab=30.10 E-value=24 Score=14.41 Aligned_cols=44 Identities=14% Similarity=-0.030 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHCCEEEEEC----CCCCEEEEEEE--CCHHHHHHHHHHHCC Q ss_conf 99999999997398799971----79822899985--898999999998375 Q gi|254780805|r 250 LTDLEKKISSKVGLNISIKH----RNNKGQFCIKY--ETNEQLKIICSLLGE 295 (300) Q Consensus 250 i~~le~~L~~~lGtkV~I~~----~~~kGkI~I~f--~s~eeLe~Il~kL~~ 295 (300) -.++..+|.+. ..|.+.. ....+-+.+.| .+.++++.++++|+. T Consensus 383 ~~e~~~~ll~~--~~v~v~~g~~f~~~~~~~Ri~~~~~~~~~l~~~~~rL~~ 432 (437) T 3g0t_A 383 SSKLIEKFVRY--GMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQM 432 (437) T ss_dssp HHHHHHHHHHT--TEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHH T ss_pred HHHHHHHHHHC--CCEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH T ss_conf 99999999971--979980876668898969999654999999999999999 No 362 >3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus} Probab=30.09 E-value=24 Score=14.41 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=12.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|..+||+..|.|++++.++. T Consensus 32 ~si~~Ia~~agvs~~tiY~~F 52 (196) T 3he0_A 32 LSMQKLANEAGVAAGTIYRYF 52 (196) T ss_dssp CCHHHHHHHHTSCHHHHHTTC T ss_pred CCHHHHHHHHCCCCCCCCCCC T ss_conf 779999998689977540218 No 363 >3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei} Probab=29.82 E-value=24 Score=14.38 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=18.1 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|..+||+..|.|++++.++. T Consensus 18 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (195) T 3pas_A 18 VREVADHGFSATSVGKIAKAAGLSPATLYIYY 49 (195) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHCC T ss_conf 99999739340759999998691914103429 No 364 >2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 Probab=29.70 E-value=24 Score=14.36 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=9.2 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-.+||+..|.|++++.++ T Consensus 34 t~~~IA~~aGvs~~~ly~~ 52 (200) T 2hyj_A 34 TIGRLAEELEMSKSGVHKH 52 (200) T ss_dssp CHHHHHHHHTCCHHHHHTT T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 8999999878197889554 No 365 >2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A* Probab=29.49 E-value=24 Score=14.34 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=15.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|-.+||++.|.|++++.++. T Consensus 25 ~~s~~~Ia~~agvs~~t~Y~~F 46 (202) T 2id6_A 25 RATTDEIAEKAGVAKGLIFHYF 46 (202) T ss_dssp HCCHHHHHHHHTCCTHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHCC T ss_conf 1649999998790999998408 No 366 >3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus} Probab=29.34 E-value=22 Score=14.68 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=14.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||+..|.|++++.++. T Consensus 24 ~si~~Ia~~agvs~~tiY~~F 44 (189) T 3geu_A 24 TTLDDIAKSVNIKKASLYYHF 44 (189) T ss_dssp CCHHHHHHHTTCCHHHHTTTC T ss_pred CCHHHHHHHHCCCHHHHHHHC T ss_conf 869999998790998870008 No 367 >3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, metal-binding, nucleus, repressor, transcription regulation, zinc; 1.55A {Homo sapiens} Probab=29.18 E-value=18 Score=15.15 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.0 Q ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHC Q ss_conf 33787786565654-------------35899998764210 Q gi|254780805|r 164 KSRSHVANILRILK-------------LPSSVREMIRKEEI 191 (300) Q Consensus 164 ~s~s~V~~~LrLl~-------------L~~~i~~~l~~~~i 191 (300) -++|||++.+|+.+ ||++|++.+.+..| T Consensus 69 P~~SWVArw~ri~~~vpG~YAv~V~g~Lp~~i~~~le~~gi 109 (120) T 3h7h_A 69 PEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGV 109 (120) T ss_dssp GGGCHHHHHTTCTTSCSEEEEEEECCCCCHHHHHHHHHTTC T ss_pred CCCCHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCC T ss_conf 84238999864567789748988458599899999998398 No 368 >2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor} Probab=29.16 E-value=25 Score=14.30 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=4.7 Q ss_pred HHHHHHHHHCCC Q ss_conf 999998863100 Q gi|254780805|r 64 EDLCQSIKSHGI 75 (300) Q Consensus 64 ~eLa~SI~~~G~ 75 (300) +.-..-+.++|. T Consensus 30 ~aA~~l~~~~G~ 41 (214) T 2zb9_A 30 HAVGELLLTEGT 41 (214) T ss_dssp HHHHHHHHHHCG T ss_pred HHHHHHHHHHCC T ss_conf 999999998593 No 369 >3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A* Probab=29.05 E-value=25 Score=14.29 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=28.1 Q ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHH-----HHHHHHHHHHHHHHH Q ss_conf 99999998521011-10467999974-----337877865656543 Q gi|254780805|r 139 EEALGYEQLISEYG-YTQNDIGSIVG-----KSRSHVANILRILKL 178 (300) Q Consensus 139 e~A~~~~~l~~~~~-~t~~~lA~~~G-----~s~s~V~~~LrLl~L 178 (300) ++=..+++|+.+.. .||++|.+.|- .+++|||+-|+-+.+ T Consensus 20 ~Rq~~I~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATiSRDlkeL~i 65 (170) T 3lap_A 20 GRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGA 65 (170) T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCC T ss_conf 9999999999858978999999999975985418998988998478 No 370 >1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1 Probab=29.01 E-value=25 Score=14.29 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=31.1 Q ss_pred HHHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCC Q ss_conf 99999999997398799971798228999-85898999999998375645 Q gi|254780805|r 250 LTDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDF 298 (300) Q Consensus 250 i~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~ 298 (300) -..+..+|. ..|..+.|...+.-.+|.+ +|.+.++.+.++++|++..+ T Consensus 23 A~~l~~~L~-~~G~~a~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~G~ 71 (81) T 1uta_A 23 AETVRAQLA-FEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGH 71 (81) T ss_dssp HHHHHHHHH-HHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCC T ss_pred HHHHHHHHH-HCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 999999998-6598417822897999998773999999999999998799 No 371 >3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A* Probab=29.00 E-value=25 Score=14.29 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=4.8 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999886310 Q gi|254780805|r 63 LEDLCQSIKSHG 74 (300) Q Consensus 63 l~eLa~SI~~~G 74 (300) ++.-.+-+.++| T Consensus 50 l~AA~~l~~e~G 61 (256) T 3g1l_A 50 LATAENLLEDRP 61 (256) T ss_dssp HHHHHHHTTTSC T ss_pred HHHHHHHHHHHC T ss_conf 999999999839 No 372 >2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1 Probab=28.88 E-value=25 Score=14.27 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=20.7 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---104679999743378778656 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~L 173 (300) .+++.+.| .|-++||++.|.|++++.++. T Consensus 18 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 49 (194) T 2g7s_A 18 RTLIIRGGYNSFSYADISQVVGIRNASIHHHF 49 (194) T ss_dssp HHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHCCC T ss_conf 99999749574779999998782921331158 No 373 >2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1 Probab=28.71 E-value=25 Score=14.26 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=15.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|-++||+..|.|++++.++.. T Consensus 32 ~ti~~IA~~agvs~~t~Y~~F~ 53 (202) T 2i10_A 32 TSITDLTKALGINPPSLYAAFG 53 (202) T ss_dssp CCHHHHHHHHTCCHHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHHHHCC T ss_conf 7699999997909999977618 No 374 >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Probab=28.64 E-value=25 Score=14.25 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=14.4 Q ss_pred EEEEEEECCHHHHHHHHHHHC Q ss_conf 289998589899999999837 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300) |+|.+-.-+.++++++.++|. T Consensus 379 gRis~a~l~~~~i~~~a~aI~ 399 (405) T 3k7y_A 379 GRINVSGITKNNVDYIADKIC 399 (405) T ss_dssp SEEEGGGCCTTHHHHHHHHHH T ss_pred CEEEEECCCHHHHHHHHHHHH T ss_conf 769970398888999999999 No 375 >3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, transcription regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A Probab=28.63 E-value=25 Score=14.25 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 999999988631001 Q gi|254780805|r 62 GLEDLCQSIKSHGII 76 (300) Q Consensus 62 ~l~eLa~SI~~~G~l 76 (300) ...+|+.=|+-.|.+ T Consensus 28 ~~aeL~gll~~~g~l 42 (295) T 3hyi_A 28 VISELLGFIKARGDL 42 (295) T ss_dssp HHHHHHHHHHHHEEE T ss_pred HHHHHHHHHHHCCCE T ss_conf 999999999958947 No 376 >1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Probab=28.49 E-value=25 Score=14.23 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=44.9 Q ss_pred HHHHHHHHCCCCCCCEEEC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH------------- Q ss_conf 9999886310015504620-56544533357567777764210013543334641123455666543------------- Q gi|254780805|r 65 DLCQSIKSHGIIQPLIVRA-IDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENV------------- 130 (300) Q Consensus 65 eLa~SI~~~G~lqPi~Vr~-~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~------------- 130 (300) ++...|++.+--.|+++-- .++..| + ..+..+|-.. .+.++.+..+... .+++. T Consensus 65 ~~l~~i~~~~~~~~iI~lt~~~~~~~-~-------~~al~~Ga~~--yl~Kp~~~~el~~--~i~~~l~~~~~~~~~~~~ 132 (208) T 1yio_A 65 ELQEQLTAISDGIPIVFITAHGDIPM-T-------VRAMKAGAIE--FLPKPFEEQALLD--AIEQGLQLNAERRQARET 132 (208) T ss_dssp HHHHHHHHTTCCCCEEEEESCTTSCC-C-------HHHHHTTEEE--EEESSCCHHHHHH--HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHH-H-------HHHHHCCCCE--EEECCCCHHHHHH--HHHHHHHHHHHHHHHHHH T ss_conf 99999886056651798725799999-9-------9999779998--9538999999999--999999740134455553 Q ss_pred ------HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf ------10221048999999985210111046799997433787786565 Q gi|254780805|r 131 ------QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ------~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-..|++-|.. .-+++.+ |++..++|..+|.|..||.++++ T Consensus 133 ~~~~~~~~~~Lt~re~e--vl~ll~~-g~~~~eIa~~l~iS~~TV~~h~~ 179 (208) T 1yio_A 133 QDQLEQLFSSLTGREQQ--VLQLTIR-GLMNKQIAGELGIAEVTVKVHRH 179 (208) T ss_dssp HHHHHHHHHTSCHHHHH--HHHHHTT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCCCCCCHHHHH--HHHHHHC-CCCHHHHHHHCCCCHHHHHHHHH T ss_conf 32100112322468999--9999981-56499999972876899999999 No 377 >2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1 Probab=28.40 E-value=26 Score=14.22 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=8.8 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |.++||++.|.|++++.++ T Consensus 29 si~~Ia~~agvs~~~~Y~~ 47 (180) T 2fd5_A 29 SVGEVMGAAGLTVGGFYAH 47 (180) T ss_dssp CHHHHHHHTTCCGGGGGGT T ss_pred CHHHHHHHHCCCCCCHHHH T ss_conf 7999999868897617676 No 378 >3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP} Probab=28.32 E-value=26 Score=14.21 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=14.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|-.+||++.|.|++++.++.. T Consensus 43 ~t~~~IA~~agvs~~t~Y~~F~ 64 (207) T 3bjb_A 43 VQMHEVAKRAGVAIGTLYRYFP 64 (207) T ss_dssp CCHHHHHHHHTCCHHHHHHHCS T ss_pred CCHHHHHHHHCCCHHHHHHCCC T ss_conf 7799999998909988613189 No 379 >2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP} Probab=28.32 E-value=26 Score=14.21 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||++.|.|++++.++. T Consensus 61 T~~~Ia~~AGvs~~t~Y~~F 80 (214) T 2guh_A 61 TLKDIAEDAGVSAPLIIKYF 80 (214) T ss_dssp CHHHHHHHHTSCHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHC T ss_conf 79999999791987999987 No 380 >3meb_A Aspartate aminotransferase; pyridoxal phosphate, structural genomics, seattle structural genomics center for infectious disease; HET: PLP; 1.90A {Giardia lamblia atcc 50803} Probab=27.93 E-value=26 Score=14.17 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=21.8 Q ss_pred HHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 999999739879997179822899985898999999998375 Q gi|254780805|r 254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 254 e~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) -++|.+..|.-+ -.+.|+|.+-.-+.++++++.+.|++ T Consensus 402 ~~~L~~e~~V~~----vpg~gRIs~a~l~~~~i~~~a~aI~~ 439 (448) T 3meb_A 402 VDYLKEKWSIYL----VKAGGRMSMCGLTESNCDYVAEAIHD 439 (448) T ss_dssp HHHHHHHHCEEE----CSGGGEEEGGGCCTTTHHHHHHHHHH T ss_pred HHHHHHCCCEEE----ECCCEEEEECCCCHHHHHHHHHHHHH T ss_conf 999998199999----27986999721898899999999999 No 381 >3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV} Probab=27.65 E-value=26 Score=14.14 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 30 ~ti~~Ia~~agvs~~tiY~~F 50 (203) T 3cdl_A 30 TSMDRIAARAEVSKRTVYNHF 50 (203) T ss_dssp CCHHHHHHHTTSCHHHHHTTS T ss_pred CCHHHHHHHHCCCCCCHHHHC T ss_conf 789999998685955255218 No 382 >1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis} Probab=27.50 E-value=26 Score=14.12 Aligned_cols=49 Identities=8% Similarity=0.215 Sum_probs=35.4 Q ss_pred HHHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCCC Q ss_conf 99999999997398799971798228999-858989999999983756456 Q gi|254780805|r 250 LTDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDFE 299 (300) Q Consensus 250 i~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~~ 299 (300) ...+..+|.. .|.++.|...+.-.+|.+ +|.+.++.+.++.+|++..++ T Consensus 23 A~~~~~~L~~-~g~~~~i~~~~~~yrV~vGpf~~~~~A~~~~~~lk~~g~~ 72 (79) T 1x60_A 23 ADSLASNAEA-KGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFD 72 (79) T ss_dssp HHHHHHHHHH-HTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSC T ss_pred HHHHHHHHHH-CCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 9999999986-5996399855833999996769999999999999983997 No 383 >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus HB8} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Probab=27.46 E-value=27 Score=14.12 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=24.6 Q ss_pred HHHHHHHHHHHHCCEEEEE-CC--CCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 9999999999739879997-17--98228999858-98999999998375 Q gi|254780805|r 250 LTDLEKKISSKVGLNISIK-HR--NNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 250 i~~le~~L~~~lGtkV~I~-~~--~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) -..+.+.|.+. | |-+- .. ...|-+.|.|. +.++++.-+++|.+ T Consensus 334 ~~~~~~~l~e~-g--V~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~ 380 (385) T 1b5p_A 334 EVRAAERLLEA-G--VAVVPGTDFAAFGHVRLSYATSEENLRKALERFAR 380 (385) T ss_dssp HHHHHHHHHHT-T--EECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGG T ss_pred HHHHHHHHHHC-C--EEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 99999999978-9--89993733689997999965999999999999999 No 384 >2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3} Probab=27.42 E-value=27 Score=14.11 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=13.1 Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-HHCC Q ss_conf 5789998768988999999988-6310 Q gi|254780805|r 49 PNPHNPRNYFESEGLEDLCQSI-KSHG 74 (300) Q Consensus 49 ~~p~~pR~~~~~~~l~eLa~SI-~~~G 74 (300) -.+..||+..+.+.|-+-+..+ .++| T Consensus 20 ~g~~~~rr~~tre~Il~AA~~l~~e~G 46 (241) T 2hxi_A 20 QGHMAGRRRWSTEQILDAAAELLLAGD 46 (241) T ss_dssp --------CCCHHHHHHHHHHHHSSSS T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 378787521189999999999999729 No 385 >2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3} Probab=27.42 E-value=27 Score=14.11 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=5.1 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999886310 Q gi|254780805|r 63 LEDLCQSIKSHG 74 (300) Q Consensus 63 l~eLa~SI~~~G 74 (300) ++.-.+-+.++| T Consensus 13 l~AA~~l~~~~G 24 (195) T 2dg7_A 13 KRAALELYSEHG 24 (195) T ss_dssp HHHHHHHHHHSC T ss_pred HHHHHHHHHHHC T ss_conf 999999999859 No 386 >2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli} Probab=27.38 E-value=27 Score=14.11 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHH Q ss_conf 1104679999743378778656565-4358 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRIL-KLPS 180 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl-~L~~ 180 (300) .++.+++|+.+|.|++++++..+-. ..++ T Consensus 20 ~~~l~~lA~~~~~s~~~l~r~fk~~~g~s~ 49 (107) T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQLGISV 49 (107) T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHHHSSCH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCH T ss_conf 979999999989299999999999989198 No 387 >3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp} Probab=27.31 E-value=27 Score=14.10 Aligned_cols=20 Identities=10% Similarity=0.262 Sum_probs=10.2 Q ss_pred CCHHHHHHHHHHHHHHHHHH Q ss_conf 10467999974337877865 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~ 172 (300) .|-.+||+..|.|++++.++ T Consensus 31 ~ti~~Ia~~agvs~~t~Y~~ 50 (191) T 3on4_A 31 FSFKDIATAINIKTASIHYH 50 (191) T ss_dssp CCHHHHHHHHTCCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHC T ss_conf 77999999878294468760 No 388 >2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A* Probab=27.12 E-value=16 Score=15.49 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=7.4 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVAN 171 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~ 171 (300) |-.+||++.|.|++++.+ T Consensus 35 t~~~IA~~agvs~~tiY~ 52 (210) T 2qco_A 35 SLSDIIKLSGGSYSNIYD 52 (210) T ss_dssp CHHHHHHHHCTTCTTCSS T ss_pred CHHHHHHHHCCCHHHHHH T ss_conf 799999986878406888 No 389 >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Probab=27.02 E-value=27 Score=14.07 Aligned_cols=44 Identities=7% Similarity=0.024 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHCCEEEE------EC---CCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 99999999973987999------71---798228999858-9899999999837 Q gi|254780805|r 251 TDLEKKISSKVGLNISI------KH---RNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I------~~---~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) .++-.+|-+..|.-|.= .. ..+.|-|.|.|. +.++++.=+++|. T Consensus 339 ~~~~~~ll~~~gV~v~PG~~F~~~~~~g~~g~~~vRls~~~~~e~l~~a~~rl~ 392 (396) T 3jtx_A 339 LAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIV 392 (396) T ss_dssp HHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCEEEECCHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 999999999789999764452677666878899799997488999999999999 No 390 >3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579} Probab=26.99 E-value=25 Score=14.27 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=4.6 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 67999974337877 Q gi|254780805|r 156 NDIGSIVGKSRSHV 169 (300) Q Consensus 156 ~~lA~~~G~s~s~V 169 (300) .++|+.+|.|..|+ T Consensus 8 geva~~~gvs~~TL 21 (146) T 3hh0_A 8 SEFASVGDVTVRAL 21 (146) T ss_dssp HHHHHHHTCCHHHH T ss_pred HHHHHHHCCCHHHH T ss_conf 99999989598899 No 391 >3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A Probab=26.81 E-value=27 Score=14.04 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=30.9 Q ss_pred CCCCCHHHHHH-HHHHHCCCC-------CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 33357567777-764210013-------5433346411234556665431022104899999998521011104679999 Q gi|254780805|r 90 KIIAGERRFRA-AKMASLSEV-------PVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSI 161 (300) Q Consensus 90 ~ii~G~rR~rA-a~~~g~~~i-------p~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~ 161 (300) -++..-|++|| ++.+.+..+ .+||-+--+.... ...++-.| -+.-..|+.++.+-|++++++... T Consensus 9 k~L~niRsLRA~arel~le~Lee~leKl~~Vv~ERreee~~--~~~~~~er-----~~Kl~~~~e~l~~~Gidp~eL~~~ 81 (86) T 3nr7_A 9 KILNNIRTLRAQARESTLETLEEMLEKLEVVVNERREEESA--AAAEVEER-----TRKLQQYREMLIADGIDPNELLNS 81 (86) T ss_dssp HHHTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHTCCCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99804888999998798999999999999999999999999--99999999-----999999999998859999999755 Q ss_pred HH Q ss_conf 74 Q gi|254780805|r 162 VG 163 (300) Q Consensus 162 ~G 163 (300) ++ T Consensus 82 ~~ 83 (86) T 3nr7_A 82 MA 83 (86) T ss_dssp HH T ss_pred HC T ss_conf 13 No 392 >1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1 Probab=26.81 E-value=27 Score=14.04 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=10.5 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~L 173 (300) |-.+||+..|.|+++|.++. T Consensus 33 T~~~IA~~aGvs~~~iY~~F 52 (224) T 1t33_A 33 TTRDIAALAGQNIAAITYYF 52 (224) T ss_dssp CHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCCCCC T ss_conf 79999998099802123578 No 393 >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 Probab=26.59 E-value=27 Score=14.02 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=28.2 Q ss_pred CCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 022104899999998521---0111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLIS---EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~---~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+|++.+-. .+..|.. ..|+|+.+||+.+|.++++|++.+. T Consensus 64 ~~GLt~~q~~-vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~ 108 (181) T 2fbk_A 64 ASGLNAAGWD-LLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIV 108 (181) T ss_dssp TTTCCHHHHH-HHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHH T ss_pred HCCCCHHHHH-HHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8697999999-99999850999990999999997878757999999 No 394 >3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae} Probab=26.36 E-value=28 Score=13.99 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=6.9 Q ss_pred CHHHH-HHHHHHHHHCCC Q ss_conf 98899-999998863100 Q gi|254780805|r 59 ESEGL-EDLCQSIKSHGI 75 (300) Q Consensus 59 ~~~~l-~eLa~SI~~~G~ 75 (300) ..+.| +.-..=+.++|. T Consensus 19 ~~e~IL~aA~~lf~~~G~ 36 (251) T 3npi_A 19 STDTVLDIALSLFSELGF 36 (251) T ss_dssp CHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 799999999999998692 No 395 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=26.29 E-value=28 Score=13.98 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHCCEEEEECCCC Q ss_conf 9999999997398799971798 Q gi|254780805|r 251 TDLEKKISSKVGLNISIKHRNN 272 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I~~~~~ 272 (300) .+-.++....+|-+|.+...++ T Consensus 262 ~~~~~~~~~~~gk~V~v~~~~~ 283 (321) T 1bia_A 262 LSRWEKLDNFINRPVKLIIGDK 283 (321) T ss_dssp HHHHHHHBTTTTSEEEEEETTE T ss_pred HHHHHHHHCCCCCEEEEEECCE T ss_conf 9999986332498699997997 No 396 >3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2} Probab=26.13 E-value=28 Score=13.96 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=8.9 Q ss_pred CCCCCCCHHHH-HHHHHHHHHCC Q ss_conf 99876898899-99999886310 Q gi|254780805|r 53 NPRNYFESEGL-EDLCQSIKSHG 74 (300) Q Consensus 53 ~pR~~~~~~~l-~eLa~SI~~~G 74 (300) +||..-..+.| +.-..-+.++| T Consensus 25 ~~~~~~tr~~Il~AA~~l~~~~G 47 (222) T 3bru_A 25 APDASLAHQSLIRAGLEHLTEKG 47 (222) T ss_dssp --CGGGHHHHHHHHHHHHHHHSC T ss_pred CCCHHHHHHHHHHHHHHHHHHHC T ss_conf 98768899999999999999859 No 397 >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A Probab=26.04 E-value=28 Score=13.95 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=23.5 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101-1104679999743378778656565 Q gi|254780805|r 143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ++..|.++. ..+..+||+.+|.|+++|+..++=| T Consensus 14 ~Iy~l~~~~~~~~~~~lA~~L~vs~~sv~~~l~~L 48 (230) T 1fx7_A 14 TIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRM 48 (230) T ss_dssp HHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999864997619999998788928999999999 No 398 >2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A* Probab=26.03 E-value=28 Score=13.95 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=11.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~L 173 (300) .|-.+||++.|.|++++.++. T Consensus 25 ~s~~~IA~~AGvs~~siY~yF 45 (185) T 2yve_A 25 LSYDSLAEATGLSKSGLIYHF 45 (185) T ss_dssp CCHHHHHHHHCCCHHHHHHHC T ss_pred CCHHHHHHHHCCCHHHHCCCC T ss_conf 779999998683853130668 No 399 >1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} SCOP: c.101.1.1 PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1x09_A* 1x08_A* Probab=25.69 E-value=20 Score=14.85 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHHHC-CHHHHHHHH--HC--C---H----HHHHHHHHHHCCCCHHHH-HHHHH Q ss_conf 565435899998764210-167777764--01--0---0----468999974222477899-99997 Q gi|254780805|r 174 RILKLPSSVREMIRKEEI-SLGHARTLV--ST--S---D----PLSLAQVIVSKKMSVRDT-EELVQ 227 (300) Q Consensus 174 rLl~L~~~i~~~l~~~~i-s~ghar~Ll--~~--~---~----~~~la~~Ii~~~LSVRe~-E~lVk 227 (300) ++-.||+.+++.+..-+- |.+.-...+ .+ . + ..++++.+..++++.-++ |+.+. T Consensus 112 d~~~lp~~~~~~i~~~e~~T~~n~~~~Lnia~~YgGr~EIv~A~k~~~~~~~~~~~~~~~i~~~~i~ 178 (253) T 1ueh_A 112 DTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLN 178 (253) T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCSCEEEEEESCCHHHHHHHHHHHHHHHHHTTSCCGGGCCHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 6310457889987678986469998158998567768999999999999998189997887788888 No 400 >2v7s_A Probable conserved lipoprotein LPPA; unknown function, putative lipoprotein; 1.96A {Mycobacterium tuberculosis} Probab=25.61 E-value=7.8 Score=17.54 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=23.1 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 23578999876898899999998863100155 Q gi|254780805|r 47 IVPNPHNPRNYFESEGLEDLCQSIKSHGIIQP 78 (300) Q Consensus 47 i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqP 78 (300) ..++|++||+. .+|...+|.++++..|.+.+ T Consensus 31 ~~~s~d~~~rl-t~eqvaqled~Lr~K~s~Ea 61 (215) T 2v7s_A 31 MDHNPDTSRRL-TGEQKIQLIDSMRNKGSYEA 61 (215) T ss_dssp ----CCHHHHH-HHHHHHHHHHHHGGGCCHHH T ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHHCCCHHH T ss_conf 78999865334-98899999999863665678 No 401 >3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1} Probab=25.48 E-value=24 Score=14.38 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=12.0 Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 76421001354333464112345566654 Q gi|254780805|r 101 AKMASLSEVPVIIRNVDNKSSLEIAIVEN 129 (300) Q Consensus 101 a~~~g~~~ip~iv~~~~d~~~~~~~l~EN 129 (300) |+.+|.. ...+-.-..+.+.+..++++. T Consensus 62 A~~agvs-~~tiY~yF~sK~~L~~~~~~~ 89 (237) T 3kkd_A 62 AAEAQVP-LSATTYYFKDIDDLITDTFAL 89 (237) T ss_dssp HHHHTSC-TTTC-----CHHHHHHHHHHH T ss_pred HHHHCCC-HHHHHHHCCCHHHHHHHHHHH T ss_conf 9998868-577988769999999999999 No 402 >2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str} Probab=25.28 E-value=29 Score=13.86 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565654 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ...|... .+.| |-...|+.+|.|++.|++.++-++ T Consensus 29 ~~ll~aV-~~~G-Sit~AA~~L~iSq~avs~~i~~LE 63 (135) T 2ijl_A 29 VELMQLI-AETG-SISAAGRAMDMSYRRAWLLVDALN 63 (135) T ss_dssp HHHHHHH-HHHS-CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred HHHHHHH-HHHC-CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999999-9969-999999997889889999999999 No 403 >3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} Probab=25.20 E-value=29 Score=13.86 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=35.8 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 7567777764210013543334641123455666543102210489999999852101110 Q gi|254780805|r 94 GERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYT 154 (300) Q Consensus 94 G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t 154 (300) -|.-||+.+..|..+=.+...+.++.+.. .++.|++.+--=||+-.+... .|..-||++ T Consensus 61 DHY~wR~mrs~Gv~e~~itg~~~s~~ekf-~a~a~~~~~~~gnPl~~W~~l-eL~~~FGid 119 (473) T 3iac_A 61 DHYKWRALRSAGVDESLITGKETSDYEKY-MAWANTVPKTLGNPLYHWTHL-ELRRPFGIT 119 (473) T ss_dssp CSHHHHHHHHTTCCGGGTTCTTSCHHHHH-HHHHHHGGGCTTSHHHHHHHH-HHHTTTCCC T ss_pred CHHHHHHHHHCCCCHHHCCCCCCCHHHHH-HHHHHHCCHHCCCHHHHHHHH-HHHHHCCCC T ss_conf 52999999986998876678889848999-999986414128978999999-999976998 No 404 >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Probab=25.06 E-value=29 Score=13.84 Aligned_cols=42 Identities=10% Similarity=0.073 Sum_probs=21.1 Q ss_pred HHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 9999999973987999717--98228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++..+|.+..|.-|. ... +..|-+.|.|. +.|+++.-+++|. T Consensus 337 ~~~~~ll~~~gV~v~-pG~~F~~~~~iRis~~~~~e~l~~al~rl~ 381 (388) T 1j32_A 337 DFCSELLDQHQVATV-PGAAFGADDCIRLSYATDLDTIKRGMERLE 381 (388) T ss_dssp HHHHHHHHHHCEECE-EGGGGTCTTBEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEE-ECCCCCCCCEEEEEEECCHHHHHHHHHHHH T ss_conf 999999996999998-164359999699998088999999999999 No 405 >1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B Probab=24.90 E-value=30 Score=13.82 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998521011104679999743378778656565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +-..|....+. | |-...|+.+|.|++.||+.++=| T Consensus 24 ~l~~~~av~~~-g-S~t~AA~~L~iSq~avS~~I~~L 58 (265) T 1b9m_A 24 RISLLKHIALS-G-SISQGAKDAGISYKSAWDAINEM 58 (265) T ss_dssp HHHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHH-C-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999997-9-99999999798999999999999 No 406 >2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* Probab=24.81 E-value=30 Score=13.81 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=15.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|-.+||++.|.|+++|.++. T Consensus 36 ~~si~~Ia~~agvs~~tiy~yF 57 (213) T 2qtq_A 36 DISLSELSLRSGLNSALVKYYF 57 (213) T ss_dssp CCCHHHHHHHHCCCHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 1789999999794999999987 No 407 >3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli} Probab=24.81 E-value=30 Score=13.81 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=29.6 Q ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH Q ss_conf 1048999999985210--111046799997433787786565-65435899 Q gi|254780805|r 135 LNPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILR-ILKLPSSV 182 (300) Q Consensus 135 l~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~~~i 182 (300) ++++---..+..|.+. .|+++.+++.+.|.+.++.+..|+ |..+..-| T Consensus 41 lS~IrSekvI~AL~dylV~G~~rk~ac~r~~V~~syfS~~L~rL~~v~~~V 91 (111) T 3m8j_A 41 ISSIHSDRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRLNVLV 91 (111) T ss_dssp HSCCCCHHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 848896899999999998487099999990997899999999999999999 No 408 >1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=24.45 E-value=28 Score=13.97 Aligned_cols=19 Identities=16% Similarity=0.185 Sum_probs=7.8 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-++||++.|.|++++.++ T Consensus 28 s~~~Ia~~agvs~~~~y~~ 46 (191) T 1sgm_A 28 GLNQIVKESGAPKGSLYHF 46 (191) T ss_dssp CHHHHHHHHCCCSCHHHHS T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999869198899788 No 409 >2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C* Probab=23.87 E-value=31 Score=13.69 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=21.9 Q ss_pred HHHHHHHHHCC-CCHHHHHHHHH-----HHHHHHHHHHHHHH Q ss_conf 99998521011-10467999974-----33787786565654 Q gi|254780805|r 142 LGYEQLISEYG-YTQNDIGSIVG-----KSRSHVANILRILK 177 (300) Q Consensus 142 ~~~~~l~~~~~-~t~~~lA~~~G-----~s~s~V~~~LrLl~ 177 (300) ..+++++.... .||++|.+.+. .+.+|||+-|+-+. T Consensus 8 ~~I~~li~~~~i~sQ~eL~~~L~~~Gi~vTQaTlSRDL~eL~ 49 (64) T 2p5k_A 8 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64) T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC T ss_conf 999999985897889999999998598363899898899919 No 410 >3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395} Probab=23.61 E-value=31 Score=13.66 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=32.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 11046799997433787786565654358999987642101677777640 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVS 201 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~ 201 (300) .+|.+++|+.+|.|++++++.++= ..-.+.+.+..-.+. +|+.|+. T Consensus 185 ~~~l~~lA~~~~~S~~~l~r~fK~--~g~s~~~yi~~~Rl~--~A~~lL~ 230 (276) T 3gbg_A 185 NWRWADICGELRTNRMILKKELES--RGVKFRELINSIRIS--YSISLMK 230 (276) T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHT--TTCCHHHHHHHHHHH--HHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH--HCCCHHHHHHHHHHH--HHHHHHH T ss_conf 999999999979899999999999--698899999999999--9999997 No 411 >1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A Probab=23.55 E-value=27 Score=14.05 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=19.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654358 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPS 180 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~ 180 (300) .||-.++|+.+|.|.++|.-+-+.--|+| T Consensus 2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p 30 (109) T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDNIELLNP 30 (109) T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHTTSSCC T ss_pred CEEHHHHHHHHCCCHHHHHHHHHCCCCCC T ss_conf 51099999998969999999998589487 No 412 >1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1 Probab=23.48 E-value=31 Score=13.65 Aligned_cols=19 Identities=11% Similarity=0.102 Sum_probs=8.0 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |-.+||+..|.|++++.++ T Consensus 30 s~~~Ia~~agvs~~t~Y~~ 48 (206) T 1vi0_A 30 QVSKIAKQAGVADGTIYLY 48 (206) T ss_dssp CHHHHHHHHTSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 7999999979499999999 No 413 >3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp} Probab=23.47 E-value=31 Score=13.65 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=8.7 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 0467999974337877865 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~ 172 (300) |..+||++.|.|++++.++ T Consensus 34 ti~~Ia~~agvs~~t~Y~~ 52 (202) T 3lwj_A 34 SIRDIIALSEVGTGTFYNY 52 (202) T ss_dssp CHHHHHHHHCSCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHH T ss_conf 5999999879299999886 No 414 >3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus} Probab=23.25 E-value=32 Score=13.62 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=21.8 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+. +.|..+||+..|.|++++.++.. T Consensus 25 ~l~~~~G~~~~s~~~Ia~~agvs~~tlY~~F~ 56 (156) T 3ljl_A 25 DQLLRLGYDKMSYTTLSQQTGVSRTGISHHFP 56 (156) T ss_dssp HHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99987190307799999986988869989877 No 415 >2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Probab=22.90 E-value=32 Score=13.58 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=21.2 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 998521011104679999743378778 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVA 170 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~ 170 (300) +.+|+.+ |||++++-+.+|..+..|. T Consensus 15 I~~Lm~~-GYs~~dv~rAL~Ia~Nnie 40 (52) T 2ooa_A 15 IAKLMGE-GYAFEEVKRALEIAQNNVE 40 (52) T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHH T ss_pred HHHHHHC-CCCHHHHHHHHHHHHCCHH T ss_conf 9999986-6559999999999862299 No 416 >2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1 Probab=22.89 E-value=32 Score=13.57 Aligned_cols=11 Identities=9% Similarity=-0.142 Sum_probs=4.5 Q ss_pred HHHHHHHHCCC Q ss_conf 99999983756 Q gi|254780805|r 286 LKIICSLLGEN 296 (300) Q Consensus 286 Le~Il~kL~~~ 296 (300) ..-+.++|++- T Consensus 294 ~~~l~~~ik~~ 304 (310) T 2esn_A 294 HAWMIGQLKGL 304 (310) T ss_dssp HHHHHHHSCCC T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 417 >1m7y_A ACC synthase, 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, pyridoxal phosphate, lyase; HET: PPG; 1.60A {Malus x domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1ynu_A* 1b8g_A* Probab=22.89 E-value=32 Score=13.57 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=21.5 Q ss_pred HHHHHHHHHHCCEEEEE-----CCCCCEEEEEEEC--CHHHHHHHHHHHC Q ss_conf 99999999739879997-----1798228999858--9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISIK-----HRNNKGQFCIKYE--TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I~-----~~~~kGkI~I~f~--s~eeLe~Il~kL~ 294 (300) ++.++|-+. .+|-+. .....|-|.|.|. ..++|+.-+++|+ T Consensus 379 ~l~~~Ll~~--~gV~v~PG~~F~~~~~~~iRis~a~~~e~~l~eal~RL~ 426 (435) T 1m7y_A 379 ELWKKIVYE--VHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426 (435) T ss_dssp HHHHHHHHT--SCEECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHH T ss_pred HHHHHHHHH--CCEEEECCHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 999999997--899998150028999897999958699999999999999 No 418 >1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A Probab=22.82 E-value=23 Score=14.54 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHH Q ss_conf 110467999974337877865 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANI 172 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~ 172 (300) -++|..+|+.+|.+.|.||+. T Consensus 23 ~~gq~~~Ak~~G~~eS~ISRw 43 (97) T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRW 43 (97) T ss_dssp HHCHHHHHHHHTCCTTTHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHH T ss_conf 982020799849879886332 No 419 >3ez1_A Aminotransferase MOCR family; YP_604413.1, structural genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Probab=22.81 E-value=29 Score=13.84 Aligned_cols=23 Identities=4% Similarity=0.153 Sum_probs=15.5 Q ss_pred CCEEEEEEEC--CHHHHHHHHHHHC Q ss_conf 8228999858--9899999999837 Q gi|254780805|r 272 NKGQFCIKYE--TNEQLKIICSLLG 294 (300) Q Consensus 272 ~kGkI~I~f~--s~eeLe~Il~kL~ 294 (300) ..+-|.|.|. +.++++.-+++|. T Consensus 385 ~~~~iRls~a~~~~e~l~eai~rL~ 409 (423) T 3ez1_A 385 HNRNLRLAPTRPPVEEVRTAMQVVA 409 (423) T ss_dssp SSCEEEECCSSSCHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 8998999848899999999999999 No 420 >2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 Probab=22.74 E-value=32 Score=13.55 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=15.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|-++||++.|.|++++.++. T Consensus 36 ~~t~~~IA~~aGvs~~~lY~~F 57 (216) T 2oi8_A 36 ALSLNAIAKRMGMSGPALYRYF 57 (216) T ss_dssp SCCHHHHHHHTTCCHHHHHTTC T ss_pred CCCHHHHHHHHCCCHHHHHHHC T ss_conf 3889999999797988999887 No 421 >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Probab=22.38 E-value=33 Score=13.51 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=21.4 Q ss_pred HHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 9999999973987999717--98228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++.++|-+.-|.-| +... +..|-|.|.|. +.|+++.-+++|+ T Consensus 363 e~~~~ll~~~gV~v-~PG~~F~~~g~vRis~~~~~e~l~eal~Rl~ 407 (416) T 1bw0_A 363 EFFEKLLEEENVQV-LPGTIFHAPGFTRLTTTRPVEVYREAVERIK 407 (416) T ss_dssp HHHHHHHHHHCEEC-EEGGGGTCTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEE-EECCCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 99999999699999-9562148999599996599999999999999 No 422 >3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680} Probab=22.21 E-value=33 Score=13.49 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=8.2 Q ss_pred HHHHHHHHHHCCCCCCCEEEC Q ss_conf 999999886310015504620 Q gi|254780805|r 63 LEDLCQSIKSHGIIQPLIVRA 83 (300) Q Consensus 63 l~eLa~SI~~~G~lqPi~Vr~ 83 (300) |+.-.+-+.++|. . +.++. T Consensus 15 l~aa~~l~~~~G~-~-~t~~~ 33 (190) T 3jsj_A 15 LEAAAALTYRDGV-G-IGVEA 33 (190) T ss_dssp HHHHHHHHHHHCT-T-CCHHH T ss_pred HHHHHHHHHHHCC-C-CCHHH T ss_conf 9999999997697-8-87999 No 423 >2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP} Probab=22.18 E-value=33 Score=13.48 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=4.3 Q ss_pred HHHHHHHHHCC Q ss_conf 99999886310 Q gi|254780805|r 64 EDLCQSIKSHG 74 (300) Q Consensus 64 ~eLa~SI~~~G 74 (300) +.-..-+.++| T Consensus 35 ~AA~~l~~~~G 45 (215) T 2qko_A 35 NAAIEVLAREG 45 (215) T ss_dssp HHHHHHHHHTC T ss_pred HHHHHHHHHHC T ss_conf 99999999859 No 424 >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, SGC, alternative splicing, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Probab=21.96 E-value=34 Score=13.45 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=23.4 Q ss_pred HHHHHHHHHCCEEEE--EC--CCCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 999999973987999--71--798228999858-98999999998375 Q gi|254780805|r 253 LEKKISSKVGLNISI--KH--RNNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 253 le~~L~~~lGtkV~I--~~--~~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) +..+|-+..|.-|.= .+ ..+.+-+.|.|. +.|+|+..+++|++ T Consensus 441 f~~~LL~e~GV~vvPGs~Fg~~~g~~~~Ris~~~~~e~l~eal~Rl~~ 488 (498) T 3ihj_A 441 YCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKD 488 (498) T ss_dssp HHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCEEEECCHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 999999869999974033089999986999975899999999999999 No 425 >3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IDP02274, hydrolase, lipopolysaccharide biosynthesis, magnesium, structural genomics; 1.95A {Yersinia pestis CO92} Probab=21.40 E-value=34 Score=13.38 Aligned_cols=99 Identities=11% Similarity=0.117 Sum_probs=48.8 Q ss_pred HHHHHHHHHHHH-----CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH--HCC Q ss_conf 899999998863-----1001550462056544533357567777764210013543334641123455666543--102 Q gi|254780805|r 61 EGLEDLCQSIKS-----HGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENV--QRK 133 (300) Q Consensus 61 ~~l~eLa~SI~~-----~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~--~R~ 133 (300) +.+-+.+..|+- .|+++--.|.-..+|......+-+=.-|.+.+...-|++.|....+..... ...+.+ ..- T Consensus 40 ~~~~~k~~~IKlli~DvDGVlTDG~i~~~~~Gee~k~F~~~Dg~gI~~L~~~GI~v~iISg~~s~~v~-~ra~~Lgi~~i 118 (211) T 3ij5_A 40 DDVIQRAANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRRAKLLE-DRANTLGITHL 118 (211) T ss_dssp HHHHHHHTTCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCHHHH-HHHHHHTCCEE T ss_pred HHHHHHHHCCCEEEECCEECCCCCEEEECCCCCEEEEEECCHHHHHHHHHHCCCEEEEECCCCCHHHH-HHHHHCCCCEE T ss_conf 99999997899999878424067849998999899999522759999999879879997899857888-98764274257 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 210489999999852101110467999 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGS 160 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~ 160 (300) -....++..+++.+++++|++.+++|- T Consensus 119 ~~g~~dK~~~l~~l~~~~gi~~~evay 145 (211) T 3ij5_A 119 YQGQSDKLVAYHELLATLQCQPEQVAY 145 (211) T ss_dssp ECSCSSHHHHHHHHHHHHTCCGGGEEE T ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 606555199999999984878533899 No 426 >2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} Probab=20.62 E-value=36 Score=13.28 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=31.6 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH Q ss_conf 5210111046799997433787786565654358999987642101677777640100 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD 204 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~ 204 (300) |++ |-.+.++|..+|.|+..|+...+ .|-+......+..|..|+-+-+|. T Consensus 31 LV~--G~~~~evA~~~Glskq~V~~~V~------rv~~~~~~~~lP~gw~rV~v~lP~ 80 (101) T 2w7n_A 31 LVD--GKPQATFATSLGLTRGAVSQAVH------RVWAAFEDKNLPEGYARVTAVLPE 80 (101) T ss_dssp HTT--CCCHHHHHHHHTCCHHHHHHHHH------HHHHHHHHTCCCTTEEEEEEEECH T ss_pred HHC--CCCHHHHHHHHCCHHHHHHHHHH------HHHHHHHCCCCCCCEEEEEEECCH T ss_conf 848--84099999996803889999999------999998714688782788887089 No 427 >2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Probab=20.57 E-value=34 Score=13.45 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 99852101110467999974337877 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHV 169 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V 169 (300) +.+|+.+ ||+++++-+.+|..+..| T Consensus 11 I~~Lm~~-GYs~~~v~rAL~Ia~Nni 35 (56) T 2juj_A 11 IENLMSQ-GYSYQDIQKALVIAQNNI 35 (56) T ss_dssp HHHHHTT-TCCHHHHHHHHHHTTTCS T ss_pred HHHHHHC-CCCHHHHHHHHHHHHCCH T ss_conf 9999985-544999999999987119 No 428 >3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} Probab=20.53 E-value=20 Score=14.89 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=27.0 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 9852101110467999974337877865656543589999876421016777 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA 196 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha 196 (300) .+++++ |.+.+++.+.+-.-+..+. ..=.++.+.-+.+.|.|+...+ T Consensus 130 ~~~~~~-G~s~eeI~~~l~~~~~~~~----~~f~v~~L~~L~kgGRis~~~~ 176 (278) T 3fdj_A 130 QQMIEE-GKKFEEIDGAIDAYMQKTR----LFCSLKSLHNLAQNGRVSKVVA 176 (278) T ss_dssp HHHHHT-TCCHHHHHHHHHHHHTTEE----EEEEESCCHHHHHTTSSCHHHH T ss_pred HHHHHC-CCCHHHHHHHHHHHHHHCE----EEEEECCHHHHHHCCCCHHHHH T ss_conf 999982-9899999999999986367----9999697688966893417899 No 429 >3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli} Probab=20.47 E-value=36 Score=13.26 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=30.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC Q ss_conf 110467999974337877865656543589999876421016777776401 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVST 202 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~ 202 (300) .++.+++|+.+|.|+.++++.++-. .-...+.+..-.+. +|+.|+.- T Consensus 23 ~~~l~~lA~~~~~S~~~l~r~fk~~--g~t~~~yi~~~Rl~--~A~~lL~~ 69 (120) T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLREE--ETSYSQLLTECRMQ--RALQLIVI 69 (120) T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHT--TCCHHHHHHHHHHH--HHHHHHTS T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHC--CCCHHHHHHHHHHH--HHHHHHHC T ss_conf 9999999999893999999999983--99999999999999--99998605 No 430 >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Probab=20.46 E-value=36 Score=13.26 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=16.6 Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHC Q ss_conf 35789998-768988999999988631 Q gi|254780805|r 48 VPNPHNPR-NYFESEGLEDLCQSIKSH 73 (300) Q Consensus 48 ~~~p~~pR-~~~~~~~l~eLa~SI~~~ 73 (300) ..||.||- ..++.+.+++|++-.++| T Consensus 251 l~nP~NPTG~~~s~e~l~~l~~~~~~~ 277 (546) T 2zy4_A 251 CVNPSNPPSVKMDQRSLERVRNIVAEH 277 (546) T ss_dssp EESSCSSSCBCCCHHHHHHHHHHHHHT T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 839989604237999999999763024 No 431 >2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Probab=20.43 E-value=36 Score=13.25 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=20.2 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 998521011104679999743378778 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVA 170 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~ 170 (300) +.+|+.+ ||+++++-+.+|..+..|. T Consensus 8 I~~Lm~~-GYs~~~v~rAL~Ia~Nnie 33 (46) T 2oo9_A 8 IENLMSQ-GYSYQDIQKALVIAQNNIE 33 (46) T ss_dssp HHHHHHT-TBCHHHHHHHHHHTTTCHH T ss_pred HHHHHHC-CCCHHHHHHHHHHHHCCHH T ss_conf 9999986-7769999999999862199 No 432 >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Probab=20.15 E-value=37 Score=13.22 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=11.2 Q ss_pred CEEEEEEEC-CHHHHHHHHHHH Q ss_conf 228999858-989999999983 Q gi|254780805|r 273 KGQFCIKYE-TNEQLKIICSLL 293 (300) Q Consensus 273 kGkI~I~f~-s~eeLe~Il~kL 293 (300) .+-|.|.|. +.++|+.-+++| T Consensus 374 ~~~iRis~~~~~e~l~~al~rL 395 (409) T 2gb3_A 374 KKEIRIACVLEKDLLSRAIDVL 395 (409) T ss_dssp SSEEEEECCSCHHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHHH T ss_conf 9989999648999999999999 No 433 >1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, viral protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1 Probab=20.01 E-value=37 Score=13.20 Aligned_cols=24 Identities=17% Similarity=0.537 Sum_probs=13.8 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEE Q ss_conf 898899999998863100155046 Q gi|254780805|r 58 FESEGLEDLCQSIKSHGIIQPLIV 81 (300) Q Consensus 58 ~~~~~l~eLa~SI~~~G~lqPi~V 81 (300) ++..-|.+|+.+++.+|.--|.++ T Consensus 43 l~~k~ikeL~~av~~yG~~sp~t~ 66 (176) T 1p7n_A 43 LEPKLITRLADTVRTKGLRSPITM 66 (176) T ss_dssp CCHHHHHHHHHHHHTTCSSCHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCHHHH T ss_conf 898999999999998588870899 Done!