HHSEARCH alignment of GI: 254780805 and SCOP domain: d1ic8a2

Alignment

Probab=94.82  E-value=0.021  Score=32.47  Aligned_cols=57  Identities=19%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             CCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64112-345566654310221048999999985210111046799997433787786565
Q gi|254780805|r  116 VDNKS-SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       116 ~~d~~-~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++.++ +..-+-+|.+-|.|  |..-+.-++..+..++++|.++|+..|.|.|+||..|.
T Consensus         6 ~~~eE~~~~~~eVE~llr~d--~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~   63 (94)
T d1ic8a2           6 LSPEEAAHQKAVVETLLQED--PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN   63 (94)
T ss_dssp             CCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             58166767777999999659--99999999999998688599999998015999999982

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: POU-specific domain
domain: Hepatocyte nuclear factor 1a (LFB1/HNF1)
species: Human (Homo sapiens) [TaxId: 9606]