HHSEARCH alignment of GI: 254780805 and SCOP domain: d1ijwc_

Alignment

Probab=94.25  E-value=0.019  Score=32.75  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -|++ |+....++|++. |.+..+||+.+|.|++||.+++.
T Consensus         5 ~lt~-~q~~~a~~l~~~-G~s~~~iA~~~gVSr~TiYry~p   43 (47)
T d1ijwc_           5 AINK-HEQEQISRLLEK-GHPRQQLAIIFGIGVSTLYRYFP   43 (47)
T ss_dssp             SSCH-HHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHSC
T ss_pred             CCCH-HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             5999-999999999988-99799999997969999985577

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Recombinase DNA-binding domain
domain: HIN recombinase (DNA-binding domain)
species: Synthetic