HHSEARCH alignment of GI: 254780805 and SCOP domain: d1rp3a2

Alignment
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=91.19  E-value=0.32  Score=24.95  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=29.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+|-+....+.+..  .|+|.+++|+.+|.|.++|.+++.
T Consensus        21 ~L~~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~~~   59 (71)
T d1rp3a2          21 KLPEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA   59 (71)
T ss_dssp             TSCHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH--HHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             799999999999986--848999999997989999999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors
family: Sigma4 domain
domain: Sigma factor sigma-28 (FliA)
species: Aquifex aeolicus [TaxId: 63363]