Query         gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 300
No_of_seqs    186 out of 3259
Neff          6.5 
Searched_HMMs 13730
Date          Wed Jun  1 06:40:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780805.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1vk1a_ d.268.1.2 (A:) Hypothe 100.0   1E-37 7.3E-42  259.4  -5.8  190   39-233     3-209 (232)
  2 d1vz0a2 d.268.1.1 (A:23-115) P  99.9 3.3E-28 2.4E-32  198.3   3.3   93   39-132     1-93  (93)
  3 d1vz0a1 a.4.14.1 (A:116-208) P  99.9 1.9E-25 1.4E-29  180.6   8.7   91  133-224     1-93  (93)
  4 d1xw3a1 d.268.1.4 (A:28-137) S  99.8 4.3E-20 3.1E-24  146.1   5.6   92   37-131    12-110 (110)
  5 d1r71a_ a.4.14.1 (A:) Transcri  99.7 9.2E-17 6.7E-21  124.7   9.5   75  124-199     3-77  (114)
  6 d2o38a1 a.35.1.13 (A:28-116) H  95.1    0.01 7.6E-07   34.5   3.9   38  137-174     9-46  (89)
  7 d1ic8a2 a.35.1.1 (A:87-180) He  94.8   0.021 1.6E-06   32.5   4.9   57  116-174     6-63  (94)
  8 d2icta1 a.35.1.3 (A:8-94) Anti  94.4   0.015 1.1E-06   33.5   3.4   32  143-174     5-36  (87)
  9 d1ijwc_ a.4.1.2 (C:) HIN recom  94.2   0.019 1.4E-06   32.7   3.6   39  134-174     5-43  (47)
 10 d2a6ca1 a.35.1.13 (A:1-69) HTH  94.1   0.024 1.8E-06   32.1   3.9   36  139-174     6-41  (69)
 11 d2auwa1 a.35.1.10 (A:88-154) H  93.9   0.022 1.6E-06   32.4   3.4   32  142-173     4-35  (67)
 12 d1y7ya1 a.35.1.3 (A:5-73) Rest  93.8   0.031 2.3E-06   31.4   4.0   38  137-174     7-44  (69)
 13 d1lmb3_ a.35.1.2 (3:) lambda C  93.1   0.035 2.5E-06   31.1   3.3   37  143-179    16-52  (87)
 14 d1x57a1 a.35.1.12 (A:8-85) End  93.1   0.035 2.6E-06   31.1   3.4   38  137-174     4-41  (78)
 15 d2ppxa1 a.35.1.3 (A:30-91) Unc  93.1   0.028   2E-06   31.7   2.8   31  144-174     4-34  (62)
 16 d2b5aa1 a.35.1.3 (A:1-77) Regu  92.9    0.04 2.9E-06   30.7   3.4   35  140-174    11-45  (77)
 17 d1b0na2 a.35.1.3 (A:1-68) SinR  92.9   0.041   3E-06   30.6   3.4   33  142-174     4-36  (68)
 18 d2r1jl1 a.35.1.2 (L:3-68) P22   92.6   0.047 3.4E-06   30.3   3.3   34  141-174     5-38  (66)
 19 d2croa_ a.35.1.2 (A:) cro 434   92.5   0.051 3.7E-06   30.0   3.5   34  141-174     5-38  (65)
 20 d1y9qa1 a.35.1.8 (A:4-82) Prob  92.0    0.06 4.4E-06   29.6   3.4   35  140-174     9-43  (79)
 21 d1r69a_ a.35.1.2 (A:) 434 C1 r  92.0   0.064 4.7E-06   29.4   3.5   34  141-174     3-36  (63)
 22 d1utxa_ a.35.1.3 (A:) Putative  91.9   0.052 3.8E-06   30.0   3.0   31  144-174     6-36  (66)
 23 d1hlva1 a.4.1.7 (A:1-66) DNA-b  91.7     0.1 7.3E-06   28.1   4.2   44  131-174     4-47  (66)
 24 d1rp3a2 a.4.13.2 (A:164-234) S  91.2    0.32 2.3E-05   24.9   6.3   39  134-174    21-59  (71)
 25 d2hwja1 d.268.1.3 (A:4-204) Hy  90.7   0.094 6.9E-06   28.3   3.3   76   37-118     4-90  (201)
 26 d1sfxa_ a.4.5.50 (A:) Hypothet  89.3    0.31 2.3E-05   25.0   5.0   49  125-174     8-56  (109)
 27 d1s7oa_ a.4.13.3 (A:) Hypothet  86.7    0.39 2.9E-05   24.3   4.2   38  135-174    17-54  (106)
 28 d1i5za1 a.4.5.4 (A:138-206) Ca  85.0     0.5 3.7E-05   23.7   4.0   26  151-176    28-53  (69)
 29 d1umqa_ a.4.1.12 (A:) Photosyn  83.7    0.54 3.9E-05   23.4   3.7   37  137-174    19-55  (60)
 30 d2ofya1 a.35.1.3 (A:3-84) Puta  83.2    0.64 4.7E-05   23.0   3.9   23  152-174    25-47  (82)
 31 d1a04a1 a.4.6.2 (A:150-216) Ni  82.8    0.71 5.1E-05   22.7   4.0   38  134-174     6-43  (67)
 32 d1biaa1 a.4.5.1 (A:1-63) Bioti  82.6    0.56 4.1E-05   23.4   3.4   31  147-177    14-44  (63)
 33 d1or7a1 a.4.13.2 (A:120-187) S  82.3    0.64 4.7E-05   23.0   3.7   38  135-174    19-56  (68)
 34 d1fsea_ a.4.6.2 (A:) Germinati  81.8    0.81 5.9E-05   22.3   4.0   39  133-174     3-41  (67)
 35 d2d1ha1 a.4.5.50 (A:1-109) Hyp  81.8     1.5 0.00011   20.7   5.7   41  133-174    17-58  (109)
 36 d1gdta1 a.4.1.2 (A:141-183) ga  81.5    0.65 4.7E-05   22.9   3.5   31  143-174    10-40  (43)
 37 d1z05a1 a.4.5.63 (A:10-80) Tra  81.2    0.93 6.7E-05   21.9   4.2   34  141-174     9-42  (71)
 38 d1x2la1 a.35.1.7 (A:9-95) Home  81.2    0.85 6.2E-05   22.2   4.0   42  133-174     7-49  (87)
 39 d1ku9a_ a.4.5.36 (A:) DNA-bind  81.2     1.5 0.00011   20.5   5.4   45  129-174    18-63  (151)
 40 d1etxa_ a.4.1.12 (A:) FIS prot  80.6    0.79 5.8E-05   22.4   3.6   36  143-178    53-88  (89)
 41 d1ntca_ a.4.1.12 (A:) DNA-bind  80.3    0.83   6E-05   22.3   3.6   41  137-178    50-90  (91)
 42 d1xsva_ a.4.13.3 (A:) Hypothet  80.0    0.95 6.9E-05   21.9   3.9   38  135-174    19-56  (106)
 43 d1jhfa1 a.4.5.2 (A:2-72) LexA   79.8     1.2 8.5E-05   21.3   4.3   41  143-192    13-56  (71)
 44 d1yioa1 a.4.6.2 (A:131-200) Re  79.5       1 7.3E-05   21.7   3.9   39  133-174    11-49  (70)
 45 d1u2wa1 a.4.5.5 (A:12-119) Cad  79.5    0.78 5.7E-05   22.4   3.3   34  144-177    37-70  (108)
 46 d1r1ta_ a.4.5.5 (A:) SmtB repr  77.9     1.2 8.6E-05   21.3   3.8   33  144-177    29-61  (98)
 47 d1mkma1 a.4.5.33 (A:1-75) Tran  77.7     1.5 0.00011   20.7   4.2   41  136-176     2-44  (75)
 48 d1dwka1 a.35.1.4 (A:1-86) Cyan  77.5     1.2 8.8E-05   21.2   3.8   39  148-186    22-61  (86)
 49 d1ft9a1 a.4.5.4 (A:134-213) CO  77.3    0.69 5.1E-05   22.7   2.5   26  151-176    29-54  (80)
 50 d1l3la1 a.4.6.2 (A:170-234) Qu  76.7     1.4 9.9E-05   20.9   3.9   38  134-174     4-41  (65)
 51 d2gaua1 a.4.5.4 (A:152-232) Tr  76.7     1.2 8.8E-05   21.2   3.6   35  151-194    28-62  (81)
 52 d2a61a1 a.4.5.28 (A:5-143) Tra  76.6     1.8 0.00013   20.1   4.5   48  134-191    27-74  (139)
 53 d3e5ua1 a.4.5.4 (A:148-227) Ch  76.5     1.3 9.3E-05   21.0   3.7   35  151-194    29-63  (80)
 54 d1k78a1 a.4.1.5 (A:19-81) Pax-  76.2     1.5 0.00011   20.7   3.9   38  137-175    16-53  (63)
 55 d2bgca1 a.4.5.4 (A:138-237) Li  76.1     1.2 8.7E-05   21.2   3.5   34  152-194    31-65  (100)
 56 d1j5ya1 a.4.5.1 (A:3-67) Putat  75.9     1.8 0.00013   20.0   4.4   26  152-177    22-47  (65)
 57 d1wh6a_ a.35.1.7 (A:) Homeobox  74.8     1.7 0.00012   20.2   4.0   42  133-174    15-57  (101)
 58 d1r1ua_ a.4.5.5 (A:) Metal-sen  74.8     1.6 0.00011   20.5   3.8   29  149-177    28-56  (94)
 59 d2etha1 a.4.5.28 (A:1-140) Put  74.5     1.7 0.00012   20.3   3.9   42  132-174    27-68  (140)
 60 d1s7ea2 a.35.1.7 (A:6-85) Hepa  74.3    0.99 7.2E-05   21.8   2.7   41  134-174     1-42  (80)
 61 d1zyba1 a.4.5.4 (A:148-220) Pr  73.3     1.1 7.7E-05   21.6   2.6   37  151-196    26-62  (73)
 62 d1pdnc_ a.4.1.5 (C:) Paired pr  73.3     1.9 0.00014   19.9   3.9   38  139-177    20-57  (123)
 63 d2cfxa1 a.4.5.32 (A:1-63) Tran  73.0     1.3 9.4E-05   21.0   3.0   29  146-174    13-41  (63)
 64 d2nptb1 d.15.2.2 (B:42-123) Mi  72.7     2.4 0.00017   19.3   4.3   49  246-296    20-68  (82)
 65 d1z6ra1 a.4.5.63 (A:12-81) Mlc  72.3     1.9 0.00014   20.0   3.7   34  141-174     8-41  (70)
 66 d2csba5 a.267.1.1 (A:3-293) To  71.4     2.8 0.00021   18.8   4.5   95   75-170    74-213 (291)
 67 d2zcwa1 a.4.5.4 (A:118-199) Tr  71.3     1.2   9E-05   21.1   2.6   26  151-176    28-53  (82)
 68 d1ulya_ a.4.5.58 (A:) Hypothet  71.2     2.2 0.00016   19.5   3.8   29  148-176    28-56  (190)
 69 d2c60a1 d.15.2.2 (A:43-122) Mi  71.1     2.4 0.00017   19.3   4.0   49  246-296    20-68  (80)
 70 d1wh8a_ a.35.1.7 (A:) Homeobox  70.8     2.4 0.00017   19.3   3.9   42  133-174    25-67  (111)
 71 d1nr3a_ d.236.1.1 (A:) DNA-bin  70.5     0.2 1.5E-05   26.2  -1.6   22  149-170     2-23  (122)
 72 d2cyya1 a.4.5.32 (A:5-64) Puta  70.3     2.4 0.00017   19.3   3.9   30  145-174    10-39  (60)
 73 d1s3ja_ a.4.5.28 (A:) Putative  70.1       3 0.00022   18.7   5.5   48  126-174    24-71  (143)
 74 d1z91a1 a.4.5.28 (A:8-144) Org  70.0     2.8  0.0002   18.9   4.2   43  131-174    27-69  (137)
 75 d1qpza1 a.35.1.5 (A:2-58) Puri  69.6     1.2   9E-05   21.2   2.2   33  154-186     2-35  (57)
 76 d2hsga1 a.35.1.5 (A:2-58) Gluc  69.5     1.1   8E-05   21.5   2.0   34  153-186     2-36  (57)
 77 d2cg4a1 a.4.5.32 (A:4-66) Regu  68.8     1.8 0.00013   20.0   3.0   31  144-174    11-41  (63)
 78 d1jhga_ a.4.12.1 (A:) Trp repr  68.4     3.3 0.00024   18.4   4.4   42  147-188    53-95  (101)
 79 d1g2ha_ a.4.1.12 (A:) Transcri  67.7     2.3 0.00016   19.5   3.3   41  135-177    18-58  (61)
 80 d3bwga1 a.4.5.6 (A:5-82) Trans  67.0     3.3 0.00024   18.4   4.0   24  154-177    24-47  (78)
 81 d3ctaa1 a.4.5.28 (A:5-89) Ta10  66.9     3.4 0.00024   18.3   4.0   27  150-176    19-45  (85)
 82 d2hoea1 a.4.5.63 (A:10-71) N-a  64.9     2.4 0.00018   19.3   3.0   30  144-174     5-34  (62)
 83 d1i1ga1 a.4.5.32 (A:2-61) LprA  64.8     2.9 0.00021   18.8   3.3   28  147-174    12-39  (60)
 84 d1uxda_ a.35.1.5 (A:) Fructose  63.8     1.4  0.0001   20.7   1.6   34  153-186     1-38  (59)
 85 d1hw1a1 a.4.5.6 (A:5-78) Fatty  63.1     4.1  0.0003   17.8   4.5   23  154-176    29-51  (74)
 86 d1ttya_ a.4.13.2 (A:) Sigma70   63.0     2.6 0.00019   19.0   2.9   41  133-173    17-59  (87)
 87 d1efaa1 a.35.1.5 (A:2-60) Lac   63.0     1.4 9.8E-05   20.9   1.4   34  153-186     3-37  (59)
 88 d1lnwa_ a.4.5.28 (A:) MexR rep  62.8     4.2  0.0003   17.7   4.2   41  133-174    32-72  (141)
 89 d2bv6a1 a.4.5.28 (A:5-140) Tra  61.7     3.4 0.00025   18.3   3.2   41  133-174    30-70  (136)
 90 d2ev0a1 a.4.5.24 (A:2-62) Mang  61.6     3.9 0.00028   17.9   3.5   32  143-174    11-43  (61)
 91 d2p4wa1 a.4.5.64 (A:1-194) Tra  60.4     4.4 0.00032   17.6   3.7   19   60-78     42-60  (194)
 92 d1p4wa_ a.4.6.2 (A:) Transcrip  60.1     4.6 0.00033   17.5   3.7   39  133-174    21-59  (87)
 93 d1lj9a_ a.4.5.28 (A:) Transcri  59.6     4.7 0.00035   17.4   4.0   44  130-174    22-65  (144)
 94 d2jn6a1 a.4.1.19 (A:1-89) Unch  57.5     5.1 0.00037   17.2   4.5   39  137-175     8-46  (89)
 95 d2isya1 a.4.5.24 (A:2-64) Iron  55.4     5.5  0.0004   17.0   3.7   32  143-174    13-45  (63)
 96 d1ueha_ c.101.1.1 (A:) Undecap  54.3    0.29 2.1E-05   25.2  -3.3   94   90-191    11-117 (228)
 97 d2iu5a1 a.4.1.9 (A:1-71) Trans  53.6     5.5  0.0004   17.0   3.2   33  142-174    13-48  (71)
 98 d1ku3a_ a.4.13.2 (A:) Sigma70   53.5     5.9 0.00043   16.8   4.3   40  134-173     8-49  (61)
 99 d1hsja1 a.4.5.28 (A:373-487) S  53.2       5 0.00036   17.2   2.9   43  131-174    26-70  (115)
100 d1bl0a1 a.4.1.8 (A:9-62) MarA   52.8       6 0.00043   16.8   3.3   28  152-179    19-47  (54)
101 d2csfa1 a.35.1.7 (A:8-95) DNA-  52.7     6.1 0.00045   16.7   3.4   41  135-175    10-51  (88)
102 d1v4ra1 a.4.5.6 (A:1-100) Tran  52.5     4.6 0.00033   17.5   2.7   38  140-177    14-58  (100)
103 d1d1la_ a.35.1.2 (A:) cro lamb  52.2     4.6 0.00033   17.5   2.6   28  146-175     9-36  (61)
104 d2p7vb1 a.4.13.2 (B:546-613) S  51.9     6.3 0.00046   16.6   3.9   40  134-173     5-46  (68)
105 d1p4xa2 a.4.5.28 (A:126-250) S  51.8     6.3 0.00046   16.6   3.9   41  133-174    29-71  (125)
106 d1ub9a_ a.4.5.28 (A:) Hypothet  51.1     6.5 0.00047   16.5   3.8   38  136-174    15-52  (100)
107 d1e3oc2 a.35.1.1 (C:1-75) Oct-  50.7     6.6 0.00048   16.5   3.7   34  141-174    13-52  (75)
108 d2hr3a1 a.4.5.28 (A:2-146) Pro  50.4     6.7 0.00048   16.4   4.6   44  130-174    27-71  (145)
109 d2o3fa1 a.4.1.20 (A:1-83) Puta  50.2     6.7 0.00049   16.4   5.1   62  125-187     7-73  (83)
110 d3broa1 a.4.5.28 (A:3-137) Tra  48.9       7 0.00051   16.3   5.9   46  128-174    20-67  (135)
111 d1c7na_ c.67.1.3 (A:) Cystalys  48.9     6.5 0.00047   16.5   3.0   45  249-294   338-387 (394)
112 d2fbia1 a.4.5.28 (A:5-140) Pro  48.5     7.1 0.00052   16.3   4.6   42  132-174    25-66  (136)
113 d2hs5a1 a.4.5.6 (A:25-93) Puta  47.6     7.3 0.00054   16.2   4.2   25  153-177    26-50  (69)
114 d1jgsa_ a.4.5.28 (A:) Multiple  46.7     7.6 0.00055   16.1   5.7   42  132-174    29-70  (138)
115 d1t56a1 a.4.1.9 (A:22-94) Ethr  45.8     7.8 0.00057   16.0   3.2   30  145-174    13-45  (73)
116 d1ajsa_ c.67.1.1 (A:) Aspartat  45.7     7.9 0.00057   16.0   3.3   22  274-295   385-406 (412)
117 d2id3a1 a.4.1.9 (A:13-80) Puta  45.1       8 0.00058   15.9   3.1   31  144-174    15-48  (68)
118 d1f75a_ c.101.1.1 (A:) Undecap  44.4    0.54   4E-05   23.4  -3.1   17  174-190   102-118 (229)
119 d1p4xa1 a.4.5.28 (A:1-125) Sta  44.1     8.3  0.0006   15.8   3.1   42  132-174    29-72  (125)
120 d7aata_ c.67.1.1 (A:) Aspartat  44.1     8.3 0.00061   15.8   3.5   37  254-295   362-398 (401)
121 d1xi9a_ c.67.1.1 (A:) Putative  43.6     8.4 0.00062   15.8   3.2   42  252-294   343-389 (395)
122 d2frha1 a.4.5.28 (A:102-216) P  43.5     8.5 0.00062   15.8   4.1   43  133-176    29-73  (115)
123 d3tata_ c.67.1.1 (A:) Aromatic  42.4     8.8 0.00064   15.7   3.6   21  274-294   374-394 (397)
124 d1ixca1 a.4.5.37 (A:1-89) LysR  42.3     8.8 0.00064   15.7   4.4   38  138-177     3-40  (89)
125 d1jt6a1 a.4.1.9 (A:2-72) Multi  42.3     8.7 0.00063   15.7   2.8   31  144-174    10-43  (71)
126 d1au7a2 a.35.1.1 (A:5-76) Pit-  42.0     8.9 0.00065   15.6   3.5   34  141-174     9-48  (72)
127 d2fxaa1 a.4.5.28 (A:6-167) Pro  42.0     8.9 0.00065   15.6   5.5   41  133-174    37-77  (162)
128 d2esna1 a.4.5.37 (A:3-91) Prob  41.4     9.1 0.00066   15.6   3.2   34  141-176    11-44  (89)
129 d2id6a1 a.4.1.9 (A:1-75) Trans  41.0     8.1 0.00059   15.9   2.5   30  145-174    13-45  (75)
130 d2fq4a1 a.4.1.9 (A:9-77) Trans  39.5     9.8 0.00071   15.4   3.0   30  145-174    14-46  (69)
131 d3deua1 a.4.5.28 (A:2-141) Tra  39.3     9.8 0.00072   15.3   4.3   41  133-174    27-68  (140)
132 d2o4aa1 a.35.1.7 (A:370-452) D  39.2     9.9 0.00072   15.3   3.1   36  139-174     5-41  (83)
133 d2o7ta1 a.4.1.9 (A:1-78) Trans  39.1     9.9 0.00072   15.3   3.2   29  146-174    18-49  (78)
134 d1rzsa_ a.35.1.2 (A:) cro p22   39.0     8.5 0.00062   15.7   2.3   33  147-183     6-38  (61)
135 d2gfna1 a.4.1.9 (A:4-80) Proba  38.6      10 0.00073   15.3   3.0   23  152-174    26-48  (77)
136 d1yaaa_ c.67.1.1 (A:) Aspartat  38.2      10 0.00074   15.2   3.5   21  274-294   385-405 (412)
137 d1l0oc_ a.4.13.2 (C:) SigmaF {  37.4      11 0.00077   15.2   3.6   33  144-176    21-55  (57)
138 d2fbqa1 a.4.1.9 (A:2-80) Trans  36.2      11  0.0008   15.0   3.0   29  146-174    15-46  (79)
139 d2fx0a1 a.4.1.9 (A:4-76) Hemol  36.1      11  0.0008   15.0   3.2   30  145-174    14-46  (73)
140 d2hyja1 a.4.1.9 (A:8-82) Putat  36.0      11 0.00081   15.0   2.8   29  146-174    16-47  (75)
141 d2ay1a_ c.67.1.1 (A:) Aromatic  35.8      11 0.00081   15.0   3.3   36  255-295   356-391 (394)
142 d1d5ya1 a.4.1.8 (A:3-56) Rob t  35.7      10 0.00075   15.2   2.3   23  152-174    19-41  (54)
143 d1ku2a1 a.4.13.1 (A:273-332) S  35.2      11 0.00083   14.9   2.8   35  143-177    17-55  (60)
144 d2q7wa1 c.67.1.1 (A:1-396) Asp  35.1      11 0.00083   14.9   3.3   37  253-294   357-393 (396)
145 d1j9ia_ a.6.1.5 (A:) Terminase  35.0     8.2  0.0006   15.8   1.7   26  153-179     3-28  (68)
146 d1tc3c_ a.4.1.2 (C:) Transposa  34.6      12 0.00084   14.9   2.4   38  135-174     6-43  (51)
147 d1o4sa_ c.67.1.1 (A:) Aspartat  34.5      12 0.00085   14.9   3.1   42  252-294   326-370 (375)
148 d2fd5a1 a.4.1.9 (A:1-76) Proba  34.2      10 0.00076   15.2   2.2   29  146-174    18-49  (76)
149 d1vi0a1 a.4.1.9 (A:6-77) Hypot  33.8      12 0.00087   14.8   3.1   29  146-174    12-43  (72)
150 d1j32a_ c.67.1.1 (A:) Aspartat  33.6      12 0.00088   14.8   3.1   43  251-294   336-381 (388)
151 d1r7ma2 d.95.2.1 (A:121-225) D  33.1      12  0.0009   14.7   4.9   45  246-290    48-92  (105)
152 d1sfua_ a.4.5.19 (A:) 34L {Yab  33.0      12  0.0009   14.7   3.8   22  152-173    24-45  (70)
153 d1b5pa_ c.67.1.1 (A:) Aspartat  32.5      13 0.00092   14.7   3.3   44  249-295   333-380 (382)
154 d1gdea_ c.67.1.1 (A:) Aromatic  32.3      13 0.00092   14.6   3.3   43  251-295   332-380 (388)
155 d2oi8a1 a.4.1.9 (A:8-86) Putat  32.3      13 0.00092   14.6   4.0   30  145-174    19-51  (79)
156 d3c07a1 a.4.1.9 (A:15-89) Puta  32.2      13 0.00093   14.6   3.2   29  146-174    16-47  (75)
157 d2fbha1 a.4.5.28 (A:8-144) Tra  32.1      13 0.00093   14.6   5.5   40  134-174    25-65  (137)
158 d1b9ma1 a.4.5.8 (A:-1-126) N-t  32.0      13 0.00093   14.6   3.8   28  148-176    29-56  (127)
159 d1pb6a1 a.4.1.9 (A:14-85) Hypo  31.8      13 0.00094   14.6   2.8   30  145-174    14-46  (72)
160 d1aoya_ a.4.5.3 (A:) Arginine   31.7      13 0.00094   14.6   3.8   38  141-178    11-55  (78)
161 d1sgma1 a.4.1.9 (A:5-77) Putat  31.4      10 0.00074   15.2   1.7   30  145-174    12-44  (73)
162 d1t33a1 a.4.1.9 (A:1-88) Putat  31.3      13 0.00096   14.5   3.2   30  145-174    22-53  (88)
163 d1nera_ a.35.1.2 (A:) Ner {Bac  30.9      13 0.00098   14.5   2.6   40  131-174     5-44  (74)
164 d2np5a1 a.4.1.9 (A:9-77) Trans  30.1      14   0.001   14.4   3.8   32  143-174     9-43  (69)
165 d2qale1 d.14.1.1 (E:78-158) Ri  29.7      14   0.001   14.4   5.2   66   79-164    16-81  (81)
166 d2d6ya1 a.4.1.9 (A:7-74) Putat  29.3      14   0.001   14.3   3.0   29  146-174    13-44  (68)
167 d2fbka1 a.4.5.28 (A:8-179) Tra  28.9     7.7 0.00056   16.0   0.7   41  133-174    58-101 (172)
168 d1w7la_ c.67.1.1 (A:) Kynureni  28.6      15  0.0011   14.2   3.1   24  272-295   390-414 (418)
169 d1ui5a1 a.4.1.9 (A:5-75) A-fac  28.5      15  0.0011   14.2   3.8   29  146-174    16-47  (71)
170 d2ao9a1 a.4.1.17 (A:13-132) Ph  27.9      15  0.0011   14.2   7.6   46  146-191    27-75  (120)
171 d1rp3a1 a.4.13.1 (A:87-163) Si  27.6      15  0.0011   14.1   4.2   34  143-176    15-50  (77)
172 d1b4aa1 a.4.5.3 (A:4-78) Argin  27.5      15  0.0011   14.1   4.2   35  143-177     6-46  (75)
173 d1rr7a_ a.4.1.14 (A:) Middle o  27.1      16  0.0011   14.1   4.1   23  152-174    66-88  (94)
174 d2g7la1 a.4.1.9 (A:16-83) Puta  26.9      16  0.0011   14.1   3.2   29  146-174    15-46  (68)
175 d1zk8a1 a.4.1.9 (A:6-77) Trans  26.8      16  0.0011   14.0   3.4   29  146-174    14-45  (72)
176 d1z0xa1 a.4.1.9 (A:4-71) Trans  26.8      16  0.0011   14.0   3.1   23  152-174    23-45  (68)
177 d1rkta1 a.4.1.9 (A:2-82) Hypot  26.7      16  0.0011   14.0   3.5   29  146-174    22-53  (81)
178 d2g7sa1 a.4.1.9 (A:3-76) Putat  25.7      16  0.0012   13.9   3.8   23  152-174    24-46  (74)
179 d2p5ka1 a.4.5.3 (A:2-64) Argin  24.9      17  0.0012   13.8   4.5   36  142-177     7-48  (63)
180 d1in0a2 d.58.49.1 (A:90-163) H  24.8      17  0.0012   13.8   7.1   38  261-300    28-65  (74)
181 d2b0la1 a.4.5.66 (A:167-257) G  24.6      17  0.0013   13.8   4.1   36  142-177    19-59  (91)
182 d2i10a1 a.4.1.9 (A:10-78) Puta  24.2      18  0.0013   13.7   3.9   23  152-174    20-42  (69)
183 d1v7ba1 a.4.1.9 (A:1-74) Trans  24.0      18  0.0013   13.7   3.5   31  144-174    13-46  (74)
184 d1utaa_ d.58.52.1 (A:) Cell di  24.0      18  0.0013   13.7   4.8   47  251-298    20-67  (77)
185 d1v2da_ c.67.1.1 (A:) Glutamin  23.9      18  0.0013   13.7   3.3   24  272-295   342-366 (368)
186 d1tw3a1 a.4.5.29 (A:14-98) Car  23.8      18  0.0013   13.7   3.1   29  149-177    31-59  (85)
187 d2np3a1 a.4.1.9 (A:35-99) Puta  23.7      12 0.00085   14.9   0.9   30  145-174     6-38  (65)
188 d2vkva1 a.4.1.9 (A:6-67) Tetra  22.8      19  0.0014   13.6   3.6   23  152-174    19-41  (62)
189 d2g7ga1 a.4.1.9 (A:9-73) Putat  22.1      19  0.0014   13.5   2.5   25  150-174    17-41  (65)
190 d1l8qa1 a.4.12.2 (A:290-399) C  21.7      20  0.0014   13.4   2.4   26  149-174    56-82  (110)
191 d2gb3a1 c.67.1.1 (A:4-392) AAT  21.5      20  0.0014   13.4   3.3   23  273-295   359-382 (389)
192 d1vp4a_ c.67.1.1 (A:) Putative  20.4      21  0.0015   13.2   3.5   23  273-295   384-408 (420)

No 1  
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]}
Probab=100.00  E-value=1e-37  Score=259.42  Aligned_cols=190  Identities=18%  Similarity=0.184  Sum_probs=161.9

Q ss_pred             CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             024038982357899987689889999999886310015504620--565445333575677777642100135433346
Q gi|254780805|r   39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRA--IDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV  116 (300)
Q Consensus        39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~--~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~  116 (300)
                      +..+++..|.++++|||..|+++.+++|+.||+++|+++|++|++  .+++.|+||+|||||+||+.+|+++|||+|.|+
T Consensus         3 v~~ie~~~i~~~~l~P~~~~~~~~l~~L~~sI~~~G~~~ppivv~~~~~~~~y~Ii~G~~R~~Aak~lG~~~IP~iv~d~   82 (232)
T d1vk1a_           3 VKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDY   82 (232)
T ss_dssp             EECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECT
T ss_pred             CEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             43355157642128898668999999999999980987898898405899877999528999999987998567899837


Q ss_pred             CCHHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf             4112345-----------566654310221048999999985210111046799997433787786565654358999-9
Q gi|254780805|r  117 DNKSSLE-----------IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR-E  184 (300)
Q Consensus       117 ~d~~~~~-----------~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~-~  184 (300)
                      +|++...           .+++||+||++|+|+|+|.+|+++.     +++..++.+|+++++|+|.+++++++..++ .
T Consensus        83 ~de~~~~~~~~~~~~~~~~~~ien~~r~~l~~ieea~~~~~~~-----~~~~~~~~~gk~~~~i~~~lr~~~l~~~~l~~  157 (232)
T d1vk1a_          83 FDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAE-----KGEIAFALIGEKSFAIPGGLEEQKKVSKVLDE  157 (232)
T ss_dssp             TSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHH-----TTSSSEEEESSSEEEECCSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9778887654201301467899999987565766653035665-----78899998473088774057765508999999


Q ss_pred             HHHHHHCCHHHHHHHHHCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf             87642101677777640100---46899997422247789999997641022
Q gi|254780805|r  185 MIRKEEISLGHARTLVSTSD---PLSLAQVIVSKKMSVRDTEELVQEQDNKK  233 (300)
Q Consensus       185 ~l~~~~is~ghar~Ll~~~~---~~~la~~Ii~~~LSVRe~E~lVk~~~~~~  233 (300)
                      +...|.++.+|++++....+   +.+++..++.+.||||++|++|++.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~lsvre~e~~vk~~~~~~  209 (232)
T d1vk1a_         158 MDQAKEIELVYYGLKEDAKADMEKGEIDYVFIRKAPTKEEVMELVKRGEVFS  209 (232)
T ss_dssp             HHHTTSSEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBS
T ss_pred             HHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
T ss_conf             9862213187552435455678765599999864799999999998356689


No 2  
>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=99.94  E-value=3.3e-28  Score=198.27  Aligned_cols=93  Identities=45%  Similarity=0.833  Sum_probs=89.2

Q ss_pred             CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             02403898235789998768988999999988631001550462056544533357567777764210013543334641
Q gi|254780805|r   39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDN  118 (300)
Q Consensus        39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d  118 (300)
                      +.+||+++|.|||+|||+.|+++++++|+.||+++|++||++|++.++ +|+|++|||||+||+.+|+++|||+|++++|
T Consensus         1 I~~Ipi~~i~~~p~npR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~~-~y~ii~G~rR~~A~k~lg~~~ip~~v~~~~d   79 (93)
T d1vz0a2           1 VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGD-GYELVAGERRYRAALMAGLQEVPAVVKDLTD   79 (93)
T ss_dssp             CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETT-EEEEEECHHHHHHHHHHTCSEEEEEECCCCH
T ss_pred             CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC-CEEEEEEHHHHHHHHHCCCCEEEEEEEECCH
T ss_conf             969778997359889987589999999999998377774269998299-3599962657877776699666699974998


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             12345566654310
Q gi|254780805|r  119 KSSLEIAIVENVQR  132 (300)
Q Consensus       119 ~~~~~~~l~EN~~R  132 (300)
                      .++..++++||+||
T Consensus        80 ~~a~~~~l~eN~~R   93 (93)
T d1vz0a2          80 REALELALVENLQR   93 (93)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999987079


No 3  
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=99.92  E-value=1.9e-25  Score=180.60  Aligned_cols=91  Identities=45%  Similarity=0.681  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHH
Q ss_conf             221048999999985210111046799997433787786565654358999987642101677777640100--468999
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQ  210 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~  210 (300)
                      |||||+|+|.+|++|+ +||+|++++|+++|+|++||+|+|+|++||++|++++.+|+||+||||+|+++++  |..++.
T Consensus         1 EDL~piEeA~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl~L~~~v~~~l~~g~Is~ghAr~L~~l~~~~q~~~~~   79 (93)
T d1vz0a1           1 EDLSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLK   79 (93)
T ss_dssp             TTCCHHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9898999999999999-849999999999851469999999899989999999990982089999997799299999999


Q ss_pred             HHHHCCCCHHHHHH
Q ss_conf             97422247789999
Q gi|254780805|r  211 VIVSKKMSVRDTEE  224 (300)
Q Consensus       211 ~Ii~~~LSVRe~E~  224 (300)
                      +|++++||||++|.
T Consensus        80 ~ii~~~lSVR~~Ea   93 (93)
T d1vz0a1          80 EILEKGLSVRQAEA   93 (93)
T ss_dssp             HHHHTCCCHHHHCC
T ss_pred             HHHHCCCCHHHHCC
T ss_conf             99992999988656


No 4  
>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79  E-value=4.3e-20  Score=146.15  Aligned_cols=92  Identities=14%  Similarity=0.208  Sum_probs=75.3

Q ss_pred             CCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE-EEC----CCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             66024038982357899987689889999999886310015504-620----5654453335756777776421001354
Q gi|254780805|r   37 ESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLI-VRA----IDNGLYKIIAGERRFRAAKMASLSEVPV  111 (300)
Q Consensus        37 ~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~-Vr~----~~~g~y~ii~G~rR~rAa~~~g~~~ip~  111 (300)
                      ..+.+||++.|. +|+ ||. ||++.+++|++||+++|+++|++ |++    .++++|++++|||||+|++.+|+++|||
T Consensus        12 ~~i~~IPl~~I~-~p~-~r~-~d~~~i~eL~~SI~~~G~~~ppivV~~~~~~~~~~~Y~li~G~rR~~A~k~LG~~~Ipa   88 (110)
T d1xw3a1          12 AAVHNVPLSVLI-RPL-PSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPA   88 (110)
T ss_dssp             EEEEEEEGGGEE-CCS-CCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECHHHCC-CCC-CCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCEEEE
T ss_conf             637894689968-999-998-89999999999998663226762698602468898489986589999999859986618


Q ss_pred             CCCCCCCHHH--HHHHHHHHHH
Q ss_conf             3334641123--4556665431
Q gi|254780805|r  112 IIRNVDNKSS--LEIAIVENVQ  131 (300)
Q Consensus       112 iv~~~~d~~~--~~~~l~EN~~  131 (300)
                      +|.+.++.++  +..+.+||+|
T Consensus        89 ~V~~~~~~~l~lyl~~~~~~l~  110 (110)
T d1xw3a1          89 KLVQSTLSDLRVYLGASTPDLQ  110 (110)
T ss_dssp             EEEEECHHHHHHHHGGGCCCCC
T ss_pred             EEEECCHHHHHHHHHCCCCCCC
T ss_conf             9998999999998743582249


No 5  
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=99.68  E-value=9.2e-17  Score=124.75  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=69.8

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             5666543102210489999999852101110467999974337877865656543589999876421016777776
Q gi|254780805|r  124 IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTL  199 (300)
Q Consensus       124 ~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~L  199 (300)
                      .+++||+||+||+|+|+|.+|++|++. |+|+++||+++|+|++||+++|+|++||+++++++..|.|+..++...
T Consensus         3 ~ql~EN~qR~~L~p~e~A~a~~~l~~~-g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~~g~i~~~~a~~~   77 (114)
T d1r71a_           3 DQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTVVNE   77 (114)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             899998840689999999999999880-998999999977729999999999679999999999499878999999


No 6  
>d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=95.08  E-value=0.01  Score=34.45  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             48999999985210111046799997433787786565
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -.+.+..+++++...||||.++|+++|.++++|++..+
T Consensus         9 k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~   46 (89)
T d2o38a1           9 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRN   46 (89)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999599999999999733708999984


No 7  
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.82  E-value=0.021  Score=32.47  Aligned_cols=57  Identities=19%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             CCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64112-345566654310221048999999985210111046799997433787786565
Q gi|254780805|r  116 VDNKS-SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       116 ~~d~~-~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++.++ +..-+-+|.+-|.|  |..-+.-++..+..++++|.++|+..|.|.|+||..|.
T Consensus         6 ~~~eE~~~~~~eVE~llr~d--~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~   63 (94)
T d1ic8a2           6 LSPEEAAHQKAVVETLLQED--PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN   63 (94)
T ss_dssp             CCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             58166767777999999659--99999999999998688599999998015999999982


No 8  
>d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]}
Probab=94.44  E-value=0.015  Score=33.48  Aligned_cols=32  Identities=9%  Similarity=0.154  Sum_probs=28.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111046799997433787786565
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++.++++.|+||.++|+.+|.|+++|++++.
T Consensus         5 ~lke~r~~~glsq~~LA~~lGvs~~~is~ie~   36 (87)
T d2icta1           5 IIQESLDELNVSLREFARAMEIAPSTASRLLT   36 (87)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH
T ss_conf             99999998699999999997246999999998


No 9  
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=94.25  E-value=0.019  Score=32.75  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -|++ |+....++|++. |.+..+||+.+|.|++||.+++.
T Consensus         5 ~lt~-~q~~~a~~l~~~-G~s~~~iA~~~gVSr~TiYry~p   43 (47)
T d1ijwc_           5 AINK-HEQEQISRLLEK-GHPRQQLAIIFGIGVSTLYRYFP   43 (47)
T ss_dssp             SSCH-HHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHSC
T ss_pred             CCCH-HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             5999-999999999988-99799999997969999985577


No 10 
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=94.07  E-value=0.024  Score=32.09  Aligned_cols=36  Identities=17%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +-+..++++..+.|+||+++|+.+|.++++|++..+
T Consensus         6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~   41 (69)
T d2a6ca1           6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR   41 (69)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC
T ss_conf             999999999999699999999998747847999976


No 11 
>d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=93.91  E-value=0.022  Score=32.42  Aligned_cols=32  Identities=13%  Similarity=0.120  Sum_probs=27.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998521011104679999743378778656
Q gi|254780805|r  142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .-|+.+....|+||.++|+.+|.|+.+|+++=
T Consensus         4 e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE   35 (67)
T d2auwa1           4 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYR   35 (67)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             99999999959999999999599899999998


No 12 
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=93.78  E-value=0.031  Score=31.41  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             48999999985210111046799997433787786565
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -++-+..++++....|+||+++|+.+|.|+++|+++-+
T Consensus         7 ~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~   44 (69)
T d1y7ya1           7 LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER   44 (69)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             99999999999998399999998682998989999987


No 13 
>d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}
Probab=93.13  E-value=0.035  Score=31.12  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=29.1

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011104679999743378778656565435
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      .|+....+.|+||.++|+++|.|+++|+++-+=-..|
T Consensus        16 ~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~   52 (87)
T d1lmb3_          16 IYEKKKNELGLSQESVADKMGMGQSGVGALFNGINAL   52 (87)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf             9999999939999999988672288899998114787


No 14 
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.12  E-value=0.035  Score=31.06  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             48999999985210111046799997433787786565
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++-+..++++....|+||.++|+.+|.|+++|+++-+
T Consensus         4 ~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~   41 (78)
T d1x57a1           4 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES   41 (78)
T ss_dssp             CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHC
T ss_conf             48999999999998599726788718878999999980


No 15 
>d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=93.08  E-value=0.028  Score=31.70  Aligned_cols=31  Identities=6%  Similarity=0.009  Sum_probs=26.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++.+....|+||.++|+.+|.|+++|+++=.
T Consensus         4 ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~   34 (62)
T d2ppxa1           4 IKIIRRALKLTQEEFSARYHIPLGTLRDWEQ   34 (62)
T ss_dssp             HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             8999999699999999996989999998877


No 16 
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=92.94  E-value=0.04  Score=30.68  Aligned_cols=35  Identities=14%  Similarity=0.343  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+..++++....|+||+++|+.+|.|+++|+++..
T Consensus        11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~   45 (77)
T d2b5aa1          11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER   45 (77)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             99999999998099999999897979999999986


No 17 
>d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=92.89  E-value=0.041  Score=30.62  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=28.8

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999985210111046799997433787786565
Q gi|254780805|r  142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..++++..+.|+||+++|+++|.|+++|+++-+
T Consensus         4 ~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~   36 (68)
T d1b0na2           4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER   36 (68)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             999999998299999999897979999999985


No 18 
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=92.55  E-value=0.047  Score=30.29  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++++....|+||.++|+.+|.|+++++++.+
T Consensus         5 g~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~   38 (66)
T d2r1jl1           5 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER   38 (66)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999998599999999997989999999986


No 19 
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=92.49  E-value=0.051  Score=30.02  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++.+..+.|+||+++|+.+|.|+++|+++.+
T Consensus         5 ~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~   38 (65)
T d2croa_           5 SERLKKRRIALKMTQTELATKAGVKQQSIQLIEA   38 (65)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999998499999999997867949998787


No 20 
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=92.01  E-value=0.06  Score=29.57  Aligned_cols=35  Identities=20%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999985210111046799997433787786565
Q gi|254780805|r  140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+.-++.+....|+||+++|+.+|.|+++|+++.+
T Consensus         9 ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~   43 (79)
T d1y9qa1           9 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER   43 (79)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             99999999998299999999987711648999986


No 21 
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=91.99  E-value=0.064  Score=29.40  Aligned_cols=34  Identities=12%  Similarity=0.242  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.-++++..+.|+||+++|+.+|.|+++|+++.+
T Consensus         3 g~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~   36 (63)
T d1r69a_           3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN   36 (63)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             9999999998499699999983739999999878


No 22 
>d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}
Probab=91.94  E-value=0.052  Score=29.99  Aligned_cols=31  Identities=13%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++++..+.|+||.++|+++|.|+++++++.+
T Consensus         6 i~~lR~~~g~tq~elA~~~gis~~~is~~e~   36 (66)
T d1utxa_           6 LKLIREKKKISQSELAALLEVSRQTINGIEK   36 (66)
T ss_dssp             HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC
T ss_conf             9999998599999998863557989999986


No 23 
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.72  E-value=0.1  Score=28.14  Aligned_cols=44  Identities=16%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210111046799997433787786565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|..|+.-|.-..++++-+--..+|.+||+.+|.++++|++.|+
T Consensus         4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlK   47 (66)
T d1hlva1           4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK   47 (66)
T ss_dssp             SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             32337799999999999808721099999995997647999998


No 24 
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=91.19  E-value=0.32  Score=24.95  Aligned_cols=39  Identities=15%  Similarity=0.119  Sum_probs=29.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+|-+....+.+..  .|+|.+++|+.+|.|.++|.+++.
T Consensus        21 ~L~~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~~~   59 (71)
T d1rp3a2          21 KLPEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA   59 (71)
T ss_dssp             TSCHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH--HHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             799999999999986--848999999997989999999999


No 25 
>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=90.72  E-value=0.094  Score=28.31  Aligned_cols=76  Identities=14%  Similarity=0.029  Sum_probs=44.7

Q ss_pred             CCCEEEEHHHCCCCCCCCCCCCCHH----------HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             6602403898235789998768988----------999999988631001550462056544533357567777764210
Q gi|254780805|r   37 ESQDCISIHSIVPNPHNPRNYFESE----------GLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASL  106 (300)
Q Consensus        37 ~~~~~i~i~~i~~~p~~pR~~~~~~----------~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~  106 (300)
                      ..+.+|+|+.+.|-  |.---+++-          +=++..+-++.+    |+-|.--++|.+.+++||+++||...+|.
T Consensus         4 ~~l~~V~i~~L~PT--Q~~vG~~eV~~k~~~~~~~~~~~~~~yl~~k----~vPvV~gp~g~lylvD~HH~~ral~e~g~   77 (201)
T d2hwja1           4 PRLSRIAIDKLRPT--QIAVGFREVELKRKEWRETRKKDGDDFLGNH----IVPVVAGPKDRAYLIDHHHLVLALSKEGV   77 (201)
T ss_dssp             CBEEEEEGGGCBCS--BSEECHHHHHHHHHHHHTCC-----CCTTCB----EEEEEECSTTCEEECSCHHHHHHHHHTTC
T ss_pred             CCEEEEEHHHCCCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC----CCCEEECCCCCEEEECCHHHHHHHHHCCC
T ss_conf             72588787861783--1544499999999999852999999998559----96779889998678766078889987588


Q ss_pred             CCCCCCC-CCCCC
Q ss_conf             0135433-34641
Q gi|254780805|r  107 SEVPVII-RNVDN  118 (300)
Q Consensus       107 ~~ip~iv-~~~~d  118 (300)
                      +++++.| .|+++
T Consensus        78 ~~v~v~v~~dls~   90 (201)
T d2hwja1          78 EHVLTSEVAKFSH   90 (201)
T ss_dssp             CEEEEEEEEECTT
T ss_pred             CEEEEEEEEECCC
T ss_conf             6267999752565


No 26 
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=89.30  E-value=0.31  Score=24.96  Aligned_cols=49  Identities=18%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66654310221048999999985210111046799997433787786565
Q gi|254780805|r  125 AIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       125 ~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+..-+|++.| +..|..|......|+.+||+.+|.++++|++.|.
T Consensus         8 ~l~~~L~~lGlt~~e-~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~   56 (109)
T d1sfxa_           8 ELVKALEKLSFKPSD-VRIYSLLLERGGMRVSEIARELDLSARFVRDRLK   56 (109)
T ss_dssp             HHHHHHHHTCCCHHH-HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             999999985999999-9999998823899899999985798355999999


No 27 
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]}
Probab=86.65  E-value=0.39  Score=24.33  Aligned_cols=38  Identities=18%  Similarity=0.140  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|-+.....-+..  .|+|..+||+.+|.|+++|...+.
T Consensus        17 Lp~~qR~v~~L~y~--~~ls~~EIA~~lgiS~~aV~~~l~   54 (106)
T d1s7oa_          17 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIK   54 (106)
T ss_dssp             SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999898999--199999999998969999999999


No 28 
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=85.00  E-value=0.5  Score=23.65  Aligned_cols=26  Identities=46%  Similarity=0.707  Sum_probs=22.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11104679999743378778656565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ..+||++||..+|.||.+|++.|+-+
T Consensus        28 l~lt~~~lA~~~G~sRetvsr~L~~l   53 (69)
T d1i5za1          28 IKITRQEIGQIVGCSRETVGRILKML   53 (69)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             17899999989799799999999999


No 29 
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=83.72  E-value=0.54  Score=23.44  Aligned_cols=37  Identities=8%  Similarity=0.094  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             48999999985210111046799997433787786565
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+|.. .+.+.++.+++...+.|+.+|.||+++.+.|+
T Consensus        19 ~~Er~-~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmk   55 (60)
T d1umqa_          19 RVRWE-HIQRIYEMCDRNVSETARRLNMHRRTLQRILA   55 (60)
T ss_dssp             HHHHH-HHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999-99999999668599999998988999999999


No 30 
>d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=83.16  E-value=0.64  Score=22.97  Aligned_cols=23  Identities=13%  Similarity=0.044  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++|+.++|+++|.|+++|++.-+
T Consensus        25 ~~t~~eLA~~~Gvs~~~ls~iE~   47 (82)
T d2ofya1          25 DMSMVTVAFDAGISVETLRKIET   47 (82)
T ss_dssp             TSCHHHHHHHHTCCHHHHHHHHT
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             07999999897179999999982


No 31 
>d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]}
Probab=82.78  E-value=0.71  Score=22.70  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=29.4

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+|-|.-..  +++.+ |+|..+||+.+|.|..+|.++++
T Consensus         6 ~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~   43 (67)
T d1a04a1           6 QLTPRERDIL--KLIAQ-GLPNKMIARRLDITESTVKVHVK   43 (67)
T ss_dssp             GSCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             2799999999--99996-79989999997888889999999


No 32 
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=82.58  E-value=0.56  Score=23.35  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=23.8

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565654
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      |.+.--+|.++||+.+|.|+++|.+.+.-|+
T Consensus        14 L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~   44 (63)
T d1biaa1          14 LANGEFHSGEQLGETLGMSRAAINKHIQTLR   44 (63)
T ss_dssp             HTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9978958799999998939999999999999


No 33 
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=82.32  E-value=0.64  Score=22.95  Aligned_cols=38  Identities=13%  Similarity=0.017  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|-+.....-+..  .|+|.++||+.+|.|.++|.+++.
T Consensus        19 Lp~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~l~   56 (68)
T d1or7a1          19 LPEDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIF   56 (68)
T ss_dssp             SCHHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH--HCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999999999--098999999998949999999999


No 34 
>d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]}
Probab=81.85  E-value=0.81  Score=22.33  Aligned_cols=39  Identities=23%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .-|+|-|....  +++.+ |+|..+||..+|.|.++|.++++
T Consensus         3 p~LT~rE~~vl--~l~~~-G~s~~eIA~~L~is~~TV~~~~~   41 (67)
T d1fsea_           3 PLLTKREREVF--ELLVQ-DKTTKEIASELFISEKTVRNHIS   41 (67)
T ss_dssp             CCCCHHHHHHH--HHHTT-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             98889999999--99983-69899999998888889999999


No 35 
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=81.78  E-value=1.5  Score=20.67  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=31.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22104899999998521011-1046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYG-YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+|++.+-. .+..|....| +|+.+||+.+|.++++|++.+.
T Consensus        17 ~gLs~~~~~-iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~   58 (109)
T d2d1ha1          17 YKITDTDVA-VLLKMVEIEKPITSEELADIFKLSKTTVENSLK   58 (109)
T ss_dssp             HTCCHHHHH-HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             695999999-999999769898899999998856769999999


No 36 
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=81.53  E-value=0.65  Score=22.94  Aligned_cols=31  Identities=16%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99985210111046799997433787786565
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+++|.++ |+...+||+.+|.+|++|.+.|.
T Consensus        10 ~V~~L~~~-G~gat~IAk~lgI~R~SVYR~L~   40 (43)
T d1gdta1          10 AVLNMWQQ-GLGASHISKTMNIARSTVYKVIN   40 (43)
T ss_dssp             HHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999994-89899999997987999999986


No 37 
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=81.23  E-value=0.93  Score=21.94  Aligned_cols=34  Identities=12%  Similarity=0.111  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..++-+......|..+||+.+|.|+++|++.+.
T Consensus         9 ~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~   42 (71)
T d1z05a1           9 GRVYKLIDQKGPISRIDLSKESELAPASITKITR   42 (71)
T ss_dssp             HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999985994899999998878878999999


No 38 
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.18  E-value=0.85  Score=22.17  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      ++|+..|.|..++..+..++++|.-.|+. +|+|+.+++..|+
T Consensus         7 e~ldT~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~   49 (87)
T d1x2la1           7 EQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA   49 (87)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH
T ss_conf             8779999999999999994987999999998308478999984


No 39 
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=81.17  E-value=1.5  Score=20.54  Aligned_cols=45  Identities=24%  Similarity=0.172  Sum_probs=31.3

Q ss_pred             HHHCCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43102210489999999852-10111046799997433787786565
Q gi|254780805|r  129 NVQRKDLNPLEEALGYEQLI-SEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       129 N~~R~dl~p~e~A~~~~~l~-~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+.-.|++. .+..|--|. ....+|..+||+.+|.|+++|++.++
T Consensus        18 ~~~~~Gl~~~-~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~   63 (151)
T d1ku9a_          18 LAKIHGLNKS-VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLK   63 (151)
T ss_dssp             HHHHTTCCHH-HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHCCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             9998399999-999999998489892899999986777024999999


No 40 
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=80.55  E-value=0.79  Score=22.38  Aligned_cols=36  Identities=8%  Similarity=0.102  Sum_probs=28.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101110467999974337877865656543
Q gi|254780805|r  143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      .+...++.+++.+.+.|+.+|.||+++.+.|+=..+
T Consensus        53 ~i~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~gi   88 (89)
T d1etxa_          53 LLDMVMQYTRGNATRAALMMGINRGTLRKKLKKYGM   88 (89)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             999999992996999999989789999999998683


No 41 
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=80.29  E-value=0.83  Score=22.26  Aligned_cols=41  Identities=12%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             489999999852101110467999974337877865656543
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL  178 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L  178 (300)
                      .+|.. .+...++.+++.+.+.|+.+|.+|+|+.+.|+=..+
T Consensus        50 ~~E~~-lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk~~gi   90 (91)
T d1ntca_          50 ELERT-LLTTALRHTQGHKQEAARLLGWGAATLTAKLKELGM   90 (91)
T ss_dssp             HHHHH-HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             99999-999999995995999999979889999999998784


No 42 
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=79.95  E-value=0.95  Score=21.88  Aligned_cols=38  Identities=18%  Similarity=0.128  Sum_probs=26.1

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+|-+.....-+.  ..|+|..+||+.+|.|+++|...+.
T Consensus        19 Lpe~QR~vl~L~~--~e~ls~~EIA~~lgiS~~aV~~~l~   56 (106)
T d1xsva_          19 LTNKQRNYLELFY--LEDYSLSEIADTFNVSRQAVYDNIR   56 (106)
T ss_dssp             SCHHHHHHHHHHH--TSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH--HHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999999999--9087599999998959999999999


No 43 
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=79.77  E-value=1.2  Score=21.29  Aligned_cols=41  Identities=27%  Similarity=0.317  Sum_probs=28.3

Q ss_pred             HHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99985210111--04679999743-3787786565654358999987642101
Q gi|254780805|r  143 GYEQLISEYGY--TQNDIGSIVGK-SRSHVANILRILKLPSSVREMIRKEEIS  192 (300)
Q Consensus       143 ~~~~l~~~~~~--t~~~lA~~~G~-s~s~V~~~LrLl~L~~~i~~~l~~~~is  192 (300)
                      .+.....++|+  |..|||+.+|. |.++|.++|.         .+...|-|.
T Consensus        13 ~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~---------~Le~kG~I~   56 (71)
T d1jhfa1          13 LIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK---------ALARKGVIE   56 (71)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH---------HHHHTTSEE
T ss_pred             HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH---------HHHHCCCEE
T ss_conf             99999998288988999997729999999999999---------999975930


No 44 
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=79.49  E-value=1  Score=21.72  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|-|.-...  ++.. |++..+||..+|.|..+|.++++
T Consensus        11 ~~LT~rE~~vl~--~l~~-G~s~~eIA~~l~iS~~TV~~~~~   49 (70)
T d1yioa1          11 SSLTGREQQVLQ--LTIR-GLMNKQIAGELGIAEVTVKVHRH   49 (70)
T ss_dssp             HTSCHHHHHHHH--HHTT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             408999999999--9982-89999999897979999999999


No 45 
>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}
Probab=79.47  E-value=0.78  Score=22.44  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=26.7

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..|.....++..+||+.+|.|+++||..|+.|.
T Consensus        37 l~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~   70 (108)
T d1u2wa1          37 TYALCQDEELCVCDIANILGVTIANASHHLRTLY   70 (108)
T ss_dssp             HHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             9999868991499999888557257999999999


No 46 
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=77.92  E-value=1.2  Score=21.27  Aligned_cols=33  Identities=27%  Similarity=0.352  Sum_probs=26.1

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565654
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..|. ....+..+||+.+|.|+++|+..|+.|.
T Consensus        29 l~~L~-~~~~~v~ela~~l~is~stvS~HL~~L~   61 (98)
T d1r1ta_          29 LSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLR   61 (98)
T ss_dssp             HHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99998-1996799999998929889999999999


No 47 
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=77.68  E-value=1.5  Score=20.69  Aligned_cols=41  Identities=20%  Similarity=0.224  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             048999999985210--11104679999743378778656565
Q gi|254780805|r  136 NPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +.+++|..+-..+.+  .+++..+||+.+|.+++++.++|.-|
T Consensus         2 ~sl~r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL   44 (75)
T d1mkma1           2 NTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL   44 (75)
T ss_dssp             TTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             7899999999999857999899999999791999999999999


No 48 
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=77.45  E-value=1.2  Score=21.20  Aligned_cols=39  Identities=15%  Similarity=0.241  Sum_probs=27.1

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             21011104679999743378778656-5654358999987
Q gi|254780805|r  148 ISEYGYTQNDIGSIVGKSRSHVANIL-RILKLPSSVREMI  186 (300)
Q Consensus       148 ~~~~~~t~~~lA~~~G~s~s~V~~~L-rLl~L~~~i~~~l  186 (300)
                      ..+.|+|-++||+.+|.|..||+..+ .-..||++--+.|
T Consensus        22 K~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l   61 (86)
T d1dwka1          22 KAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLV   61 (86)
T ss_dssp             HHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             9983998999998959889999999845788999999999


No 49 
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=77.28  E-value=0.69  Score=22.75  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=21.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11104679999743378778656565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +.+|+++||..+|.+|.+|++.|+-+
T Consensus        29 ~~~t~~eiA~~lG~sretvsr~l~~l   54 (80)
T d1ft9a1          29 VDFTVEEIANLIGSSRQTTSTALNSL   54 (80)
T ss_dssp             ECCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             37899999999798899999999999


No 50 
>d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]}
Probab=76.73  E-value=1.4  Score=20.88  Aligned_cols=38  Identities=29%  Similarity=0.328  Sum_probs=28.5

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|+|-|....  +++.+ |+|-.+||+.+|.|..+|.++++
T Consensus         4 ~Lt~rE~~vl--~l~~~-G~s~~eIA~~l~iS~~TV~~~~~   41 (65)
T d1l3la1           4 WLDPKEATYL--RWIAV-GKTMEEIADVEGVKYNSVRVKLR   41 (65)
T ss_dssp             CCCHHHHHHH--HHHTT-TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             0489999999--99993-69888999997888999999999


No 51 
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=76.70  E-value=1.2  Score=21.20  Aligned_cols=35  Identities=9%  Similarity=0.242  Sum_probs=26.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             11104679999743378778656565435899998764210167
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG  194 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g  194 (300)
                      +.+||++||..+|.|+.+|++.|+         ++-.+|-|+..
T Consensus        28 ~~lt~~eLA~~~G~sretvsr~L~---------~l~~~glI~~~   62 (81)
T d2gaua1          28 IYLSREELATLSNMTVSNAIRTLS---------TFVSERMLALD   62 (81)
T ss_dssp             CCCCHHHHHHHTTSCHHHHHHHHH---------HHHHTTSEEEE
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC
T ss_conf             068999999997998999999999---------99989978963


No 52 
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=76.62  E-value=1.8  Score=20.07  Aligned_cols=48  Identities=10%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             2104899999998521011104679999743378778656565435899998764210
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      +|++. ++..+..+....+.|+.+||+.+|.++++|++.+         ..++..|-|
T Consensus        27 glt~~-q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l---------~~L~~~gli   74 (139)
T d2a61a1          27 GITPA-QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV---------KRLEADGYL   74 (139)
T ss_dssp             TCCHH-HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE
T ss_pred             CCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHH---------HHHHHCCEE
T ss_conf             97999-9999999997699899999998398814426999---------999845725


No 53 
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=76.50  E-value=1.3  Score=21.03  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=25.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             11104679999743378778656565435899998764210167
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG  194 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g  194 (300)
                      +.+||++||..+|.|+.+|++.|.         ++-.+|-|+.+
T Consensus        29 ~~lt~~elA~~~g~sretvsr~l~---------~l~~~glI~~~   63 (80)
T d3e5ua1          29 MPLSQKSIGEITGVHHVTVSRVLA---------SLKRENILDKK   63 (80)
T ss_dssp             SCCCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEC-
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC
T ss_conf             379999999998877889999999---------99989969963


No 54 
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.18  E-value=1.5  Score=20.66  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             489999999852101110467999974337877865656
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      |+|.=.-+-.+.++ |.+..++|++|+.|.++|++.++.
T Consensus        16 s~DLR~Riv~~~~~-G~s~r~aA~rf~VS~s~v~k~l~r   53 (63)
T d1k78a1          16 PDVVRQRIVELAHQ-GVRPCDISRQLRVSHGCVSKILGR   53 (63)
T ss_dssp             CHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999999995-998999999959779999999999


No 55 
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=76.14  E-value=1.2  Score=21.24  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=25.7

Q ss_pred             CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             11046799997433-78778656565435899998764210167
Q gi|254780805|r  152 GYTQNDIGSIVGKS-RSHVANILRILKLPSSVREMIRKEEISLG  194 (300)
Q Consensus       152 ~~t~~~lA~~~G~s-~s~V~~~LrLl~L~~~i~~~l~~~~is~g  194 (300)
                      .+||++||..+|.| |.+|++.|+         ++-.+|-|+..
T Consensus        31 ~lTqeeLA~~lG~s~ReTVsR~L~---------~L~~~GlI~~~   65 (100)
T d2bgca1          31 NLTMQELGYSSGIAHSSAVSRIIS---------KLKQEKVIVYK   65 (100)
T ss_dssp             CCCHHHHHHHTTCCCHHHHHHHHH---------HHHHTTSEEEE
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHH---------HHHHCCCEEEC
T ss_conf             669999998838744889999999---------99879788975


No 56 
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=75.92  E-value=1.8  Score=20.02  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565654
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+|..++|+.+|.|+.||.+.+..|+
T Consensus        22 ~vs~~~La~~l~VS~~TI~rdi~~L~   47 (65)
T d1j5ya1          22 PVSGAQLAEELSVSRQVIVQDIAYLR   47 (65)
T ss_dssp             CBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             78599999997989999999999999


No 57 
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.83  E-value=1.7  Score=20.23  Aligned_cols=42  Identities=21%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      ++|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+
T Consensus        15 ~~ldT~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~   57 (101)
T d1wh6a_          15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS   57 (101)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf             2258999999999999994976999999998108178999984


No 58 
>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}
Probab=74.82  E-value=1.6  Score=20.48  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=24.4

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10111046799997433787786565654
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+..++..++++.+|.|+++||..|+.|.
T Consensus        28 ~~~~~~v~el~~~l~~s~~~vS~HL~~L~   56 (94)
T d1r1ua_          28 SVSEASVGHISHQLNLSQSNVSHQLKLLK   56 (94)
T ss_dssp             HHCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             72995699999998878778999999999


No 59 
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=74.55  E-value=1.7  Score=20.32  Aligned_cols=42  Identities=14%  Similarity=0.210  Sum_probs=31.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..++++.+ ...+..+....++|+.+||+.+|.|+++|++.+.
T Consensus        27 ~~~lt~~q-~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~   68 (140)
T d2etha1          27 ISDMKTTE-LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVD   68 (140)
T ss_dssp             HHHSBHHH-HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred             HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             35999999-9999999986995999999998969879999999


No 60 
>d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.33  E-value=0.99  Score=21.77  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             2104899999998521011104679999-7433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      +|+..+.|..++..+..++++|.--|+. +|+|+.+++..|+
T Consensus         1 eldT~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~   42 (80)
T d1s7ea2           1 EINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLR   42 (80)
T ss_dssp             CCCSHHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHC
T ss_conf             988999999999999995987999999997438078999883


No 61 
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=73.27  E-value=1.1  Score=21.56  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             1110467999974337877865656543589999876421016777
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA  196 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha  196 (300)
                      ..+|++++|..+|.++.+|++.|.         .+-.+|-|+.++.
T Consensus        26 i~lt~~elA~~lg~sr~tvsr~l~---------~l~~~g~I~~~~~   62 (73)
T d1zyba1          26 FKVKMDDLARCLDDTRLNISKTLN---------ELQDNGLIELHRK   62 (73)
T ss_dssp             EECCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSCEEETT
T ss_pred             EECCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCC
T ss_conf             506999999897988999999999---------9998898996299


No 62 
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=73.27  E-value=1.9  Score=19.90  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999985210111046799997433787786565654
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      |.=.-+-.+.+ .|++..++|++||.|+++|++.++...
T Consensus        20 dlR~rIv~~~~-~G~s~r~iA~~~~VS~~tV~k~l~r~~   57 (123)
T d1pdnc_          20 NIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQ   57 (123)
T ss_dssp             HHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             99999999998-048999999998969999999999987


No 63 
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=73.01  E-value=1.3  Score=21.01  Aligned_cols=29  Identities=17%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             85210111046799997433787786565
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .|......+..++|+.+|.|+++|.++++
T Consensus        13 ~L~~n~r~s~~~iA~~lgis~~tv~~Ri~   41 (63)
T d2cfxa1          13 ELKKDSRLSMRELGRKIKLSPPSVTERVR   41 (63)
T ss_dssp             HHHHCSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99983999999999998968789999999


No 64 
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2,  MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.66  E-value=2.4  Score=19.33  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             897899999999997398799971798228999858989999999983756
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      .+..+.+++.+....||-...+...++  .+.|...+.+||++-++.|..+
T Consensus        20 RPv~~~dl~~kv~~afGq~ldl~y~n~--EL~IPl~~Q~DLDkAvellDrs   68 (82)
T d2nptb1          20 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS   68 (82)
T ss_dssp             SSCCHHHHHHHHHHHHTSCEEEEEEET--TEEEECCCHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf             884389999999998598466888567--6888625677789999987169


No 65 
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=72.26  E-value=1.9  Score=20.00  Aligned_cols=34  Identities=9%  Similarity=0.120  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985210111046799997433787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...++-+......|..+||+.+|.|+++|++.+.
T Consensus         8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~   41 (70)
T d1z6ra1           8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH   41 (70)
T ss_dssp             HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999994992899999998949999999999


No 66 
>d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]}
Probab=71.36  E-value=2.8  Score=18.83  Aligned_cols=95  Identities=35%  Similarity=0.449  Sum_probs=46.1

Q ss_pred             CCCCCEEECC---------C----CCCCCCCCCHHHHHH-HHHHHC--CCCCCCC-CCC--CCHHHHHHHHHHHHHCCCC
Q ss_conf             0155046205---------6----544533357567777-764210--0135433-346--4112345566654310221
Q gi|254780805|r   75 IIQPLIVRAI---------D----NGLYKIIAGERRFRA-AKMASL--SEVPVII-RNV--DNKSSLEIAIVENVQRKDL  135 (300)
Q Consensus        75 ~lqPi~Vr~~---------~----~g~y~ii~G~rR~rA-a~~~g~--~~ip~iv-~~~--~d~~~~~~~l~EN~~R~dl  135 (300)
                      -.|.++||-.         .    +.+|-|+. .|-||| |+.+.+  +.+|++- +.+  ++-+-..-.+.-...|-||
T Consensus        74 ryqnvivrgvnfdervqrlstggsparyaivy-rrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdl  152 (291)
T d2csba5          74 RYQNVIVRGVNFDERVQRLSTGGSPARYAIVY-RRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDL  152 (291)
T ss_dssp             SEEEEEETTEEHHHHHHTSTTCCCHHHHHHTS-TTTHHHHHHHTTCCGGGCCCCCCCCCTTCSSCHHHHHHHHHTTCTTT
T ss_pred             HHHHEEEECCCHHHHHHHHCCCCCCCEEEEEE-HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHHHHHHHCCCCE
T ss_conf             35410233256799899840589864067552-35489999870888123852032201148873899999999655220


Q ss_pred             CH-------HHHHHHHHHHHH------------------HCCCC-HHHHHHHHHHHHHHHH
Q ss_conf             04-------899999998521------------------01110-4679999743378778
Q gi|254780805|r  136 NP-------LEEALGYEQLIS------------------EYGYT-QNDIGSIVGKSRSHVA  170 (300)
Q Consensus       136 ~p-------~e~A~~~~~l~~------------------~~~~t-~~~lA~~~G~s~s~V~  170 (300)
                      .|       -|.|--|.+|++                  +.-|| ++++|.++|.|-|.|.
T Consensus       153 mpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvseve  213 (291)
T d2csba5         153 MPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE  213 (291)
T ss_dssp             SCSSGGGCCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC
T ss_conf             3410154895550179999997079976478999999970899972899998487532313


No 67 
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=71.34  E-value=1.2  Score=21.14  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11104679999743378778656565
Q gi|254780805|r  151 YGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       151 ~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ..+||+++|..+|.++.+|++.|.-+
T Consensus        28 i~lt~~elA~~lg~sr~tv~r~L~~l   53 (82)
T d2zcwa1          28 LKATHDELAAAVGSVRETVTKVIGEL   53 (82)
T ss_dssp             EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             05899999999898899999999999


No 68 
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=71.20  E-value=2.2  Score=19.52  Aligned_cols=29  Identities=17%  Similarity=0.315  Sum_probs=19.0

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21011104679999743378778656565
Q gi|254780805|r  148 ISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +.+..+|..+||+.+|.|+++|+..|+.|
T Consensus        28 L~~~~~s~~ela~~lg~s~~~v~~hl~~L   56 (190)
T d1ulya_          28 LRNKEMTISQLSEILGKTPQTIYHHIEKL   56 (190)
T ss_dssp             HTTCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             98199879999999891999999999999


No 69 
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3,  MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.08  E-value=2.4  Score=19.30  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=42.0

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC
Q ss_conf             897899999999997398799971798228999858989999999983756
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN  296 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~  296 (300)
                      .+..+.+++.+....||-...+...++  .+.|...+.+||++-++.|..+
T Consensus        20 RPv~~~dl~~kv~~afGq~ldl~y~n~--El~IPl~~Q~DLDkAvellDrs   68 (80)
T d2c60a1          20 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS   68 (80)
T ss_dssp             SSCCHHHHHHHHHHHHSSCCEEEEECS--SCEEECCSHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC
T ss_conf             884299999999998598364677567--1788525677789999987169


No 70 
>d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.83  E-value=2.4  Score=19.31  Aligned_cols=42  Identities=14%  Similarity=0.317  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             22104899999998521011104679999-7433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      .+|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+
T Consensus        25 ~eLDT~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~   67 (111)
T d1wh8a_          25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLS   67 (111)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             5368999999999999985832999999998008278999983


No 71 
>d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=70.52  E-value=0.2  Score=26.21  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1011104679999743378778
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVA  170 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~  170 (300)
                      .+.|+||.+||+.+|-||+.|+
T Consensus         2 R~kGltQ~eIA~~LgTSraNIs   23 (122)
T d1nr3a_           2 RERGWSQKKIARELKTTRQNVS   23 (122)
T ss_dssp             CCCSCSSCSTHHHHHHCCSSSC
T ss_pred             CCCCCCHHHHHHHHCCCHHHHH
T ss_conf             6256779999999776588999


No 72 
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=70.28  E-value=2.4  Score=19.29  Aligned_cols=30  Identities=20%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             985210111046799997433787786565
Q gi|254780805|r  145 EQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|....-.+..++|+.+|.|+++|..+++
T Consensus        10 ~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~   39 (60)
T d2cyya1          10 KILQNDGKAPLREISKITGLAESTIHERIR   39 (60)
T ss_dssp             HHHHHCTTCCHHHHHHHHCSCHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999982899999999998939999999999


No 73 
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=70.11  E-value=3  Score=18.66  Aligned_cols=48  Identities=13%  Similarity=0.207  Sum_probs=34.0

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6654310221048999999985210111046799997433787786565
Q gi|254780805|r  126 IVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       126 l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.+.+...++++. ++..+..+....+.|+.+||+.++.++++|++.+.
T Consensus        24 ~~~~l~~~glt~~-q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~   71 (143)
T d1s3ja_          24 MLESMEKQGVTPA-QLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMAD   71 (143)
T ss_dssp             HHHHHHHTTCCHH-HHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999988697999-99999999977998999999998969889999999


No 74 
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=70.05  E-value=2.8  Score=18.86  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210111046799997433787786565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..-+|++- ++..+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus        27 ~~~gLt~~-q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~   69 (137)
T d1z91a1          27 DKLNITYP-QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK   69 (137)
T ss_dssp             TTTCCCHH-HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHCCCCHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             78496999-99999998758999899999997968888979999


No 75 
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=69.57  E-value=1.2  Score=21.16  Aligned_cols=33  Identities=15%  Similarity=0.246  Sum_probs=23.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             0467999974337877865656-54358999987
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRI-LKLPSSVREMI  186 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l  186 (300)
                      |..++|+..|.|.++||+.|.= -..+++.++.|
T Consensus         2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV   35 (57)
T d1qpza1           2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAV   35 (57)
T ss_dssp             CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             8999999989599999999779985689999999


No 76 
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=69.53  E-value=1.1  Score=21.46  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=24.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             104679999743378778656565-4358999987
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI  186 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l  186 (300)
                      .|..++|+..|.|.++|++.|.=- ..+++..+.|
T Consensus         2 vTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV   36 (57)
T d2hsga1           2 VTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKV   36 (57)
T ss_dssp             CCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             69999998989599999999689886798999999


No 77 
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=68.83  E-value=1.8  Score=20.04  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=23.8

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +..|.+....+..+||+.+|.|.++|..+++
T Consensus        11 L~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~   41 (63)
T d2cg4a1          11 LEALMGNARTAYAELAKQFGVSPETIHVRVE   41 (63)
T ss_dssp             HHHHHHCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999983899999999998939999999999


No 78 
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=68.39  E-value=3.3  Score=18.43  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             5210111046799997433787786565654-35899998764
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILRILK-LPSSVREMIRK  188 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~-L~~~i~~~l~~  188 (300)
                      ++.+...|+.+|++.+|.|-++|++-=+-++ -++..+..|..
T Consensus        53 ~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk~~~~~~k~~L~~   95 (101)
T d1jhga_          53 ELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE   95 (101)
T ss_dssp             HHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             9990896799999996987577889999987288589999999


No 79 
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=67.72  E-value=2.3  Score=19.46  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=28.2

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565654
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +.-+|... +.+.++.+| +..+.|+.+|.|++++.+.|+=..
T Consensus        18 ~~~~Er~~-I~~aL~~~g-n~~~aA~~Lgisr~tL~rKlkk~g   58 (61)
T d1g2ha_          18 IGFYEAQV-LKLFYAEYP-STRKLAQRLGVSHTAIANKLKQYG   58 (61)
T ss_dssp             CSHHHHHH-HHHHHHHSC-SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred             HHHHHHHH-HHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             99999999-999999878-999999997988999999999967


No 80 
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}
Probab=67.04  E-value=3.3  Score=18.43  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=19.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             046799997433787786565654
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      +..++|+.+|.|+++|.+.|..|.
T Consensus        24 se~~La~~~~vSr~tvr~Al~~L~   47 (78)
T d3bwga1          24 VLETLMAQFEVSKSTITKSLELLE   47 (78)
T ss_dssp             CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             799999998879899999999999


No 81 
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=66.87  E-value=3.4  Score=18.35  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=22.4

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             011104679999743378778656565
Q gi|254780805|r  150 EYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       150 ~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ..++|+.+||+.+|.++++|++.+.-+
T Consensus        19 ~~~lt~~eLa~~l~i~~~~vs~~l~~L   45 (85)
T d3ctaa1          19 RAYLTSSKLADMLGISQQSASRIIIDL   45 (85)
T ss_dssp             EEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999889999999887887899999999


No 82 
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=64.94  E-value=2.4  Score=19.26  Aligned_cols=30  Identities=10%  Similarity=0.345  Sum_probs=23.6

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9985210111046799997433787786565
Q gi|254780805|r  144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++.+. +..+|..+||+.+|.|+++|++.+.
T Consensus         5 l~~i~-~~pisr~eLa~~~gls~~TVs~~v~   34 (62)
T d2hoea1           5 LKRIM-KSPVSRVELAEELGLTKTTVGEIAK   34 (62)
T ss_dssp             HHHHH-HSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999-7896999999998939999999999


No 83 
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=64.78  E-value=2.9  Score=18.81  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=22.1

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |....-.|..++|+.+|.|+++|.++++
T Consensus        12 L~~n~r~s~~~lA~~~gls~~~v~~Ri~   39 (60)
T d1i1ga1          12 LEKDARTPFTEIAKKLGISETAVRKRVK   39 (60)
T ss_dssp             HHHCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9884999999999998929999999999


No 84 
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.76  E-value=1.4  Score=20.73  Aligned_cols=34  Identities=15%  Similarity=0.311  Sum_probs=23.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q ss_conf             104679999743378778656565----4358999987
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRIL----KLPSSVREMI  186 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl----~L~~~i~~~l  186 (300)
                      +|-.++|+..|.|.++||+.|.=-    ..+++..+.|
T Consensus         1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV   38 (59)
T d1uxda_           1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKV   38 (59)
T ss_dssp             CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             97999999979699999999849987675799999999


No 85 
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.10  E-value=4.1  Score=17.79  Aligned_cols=23  Identities=17%  Similarity=0.569  Sum_probs=19.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04679999743378778656565
Q gi|254780805|r  154 TQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       154 t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +..++|+.+|.|+++|.+.+..|
T Consensus        29 s~~eLa~~~~vSr~tvr~Al~~L   51 (74)
T d1hw1a1          29 AERELSELIGVTRTTLREVLQRL   51 (74)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             49999999897989999999999


No 86 
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=63.03  E-value=2.6  Score=19.04  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985--21011104679999743378778656
Q gi|254780805|r  133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.|+|-|...--.+.  .+...+|..+||+.+|.|+..|+..-
T Consensus        17 ~~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie   59 (87)
T d1ttya_          17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIE   59 (87)
T ss_dssp             TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             6399999999999727789996889999999598899999999


No 87 
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=63.00  E-value=1.4  Score=20.89  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf             104679999743378778656565-4358999987
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI  186 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l  186 (300)
                      .|..++|+..|.|.++||+.|.=- ..+++..+.|
T Consensus         3 ~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI   37 (59)
T d1efaa1           3 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKV   37 (59)
T ss_dssp             CCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             88999998979799999999779986799999999


No 88 
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=62.78  E-value=4.2  Score=17.75  Aligned_cols=41  Identities=17%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+|++.+-. .+..+...-+.|+.++|+.+|.++++|++.+.
T Consensus        32 ~~lt~~q~~-vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~   72 (141)
T d1lnwa_          32 LDLTPPDVH-VLKLIDEQRGLNLQDLGRQMCRDKALITRKIR   72 (141)
T ss_dssp             CCCCHHHHH-HHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             798999999-99999987998999999997845737999999


No 89 
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=61.70  E-value=3.4  Score=18.34  Aligned_cols=41  Identities=15%  Similarity=0.096  Sum_probs=31.0

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+|++.+ +..+..+...-+.|+.+||+.+|.+++++++.+.
T Consensus        30 ~glt~~q-~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~   70 (136)
T d2bv6a1          30 YNLTYPQ-FLVLTILWDESPVNVKKVVTELALDTGTVSPLLK   70 (136)
T ss_dssp             HTCCHHH-HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH
T ss_pred             CCCCHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             6979999-9999999728997999999997978837999999


No 90 
>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=61.55  E-value=3.9  Score=17.94  Aligned_cols=32  Identities=22%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101-11046799997433787786565
Q gi|254780805|r  143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..|.++. ..+..+||+.+|.|+++|++.++
T Consensus        11 ~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mik   43 (61)
T d2ev0a1          11 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ   43 (61)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             999998358975099999995899515999999


No 91 
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}
Probab=60.43  E-value=4.4  Score=17.58  Aligned_cols=19  Identities=11%  Similarity=0.331  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHCCCCCC
Q ss_conf             8899999998863100155
Q gi|254780805|r   60 SEGLEDLCQSIKSHGIIQP   78 (300)
Q Consensus        60 ~~~l~eLa~SI~~~G~lqP   78 (300)
                      ...+..=-..+.+.|++..
T Consensus        42 ~~~v~~HL~~L~~~Glv~~   60 (194)
T d2p4wa1          42 QKAVLEHLRILEEAGLIES   60 (194)
T ss_dssp             HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHHHCCCEEE
T ss_conf             9899999999998897079


No 92 
>d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
Probab=60.12  E-value=4.6  Score=17.48  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..|+|.|....  .++.. |++..+||..++.|..+|..+++
T Consensus        21 ~~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~   59 (87)
T d1p4wa_          21 KRLSPKESEVL--RLFAE-GFLVTEIAKKLNRSIKTISSQKK   59 (87)
T ss_dssp             SSCCHHHHHHH--HHHHH-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             88999999999--99992-89999998786979999999999


No 93 
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=59.56  E-value=4.7  Score=17.39  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             310221048999999985210111046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...-+|++.+ +..+..+.+.-|.|+.+||+.+|.++++|++.+.
T Consensus        22 ~~~~~lt~~q-~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~   65 (144)
T d1lj9a_          22 FKELSLTRGQ-YLYLVRVCENPGIIQEKIAELIKVDRTTAARAIK   65 (144)
T ss_dssp             TGGGTCTTTH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8876989999-9999999828998999999987824716999999


No 94 
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=57.54  E-value=5.1  Score=17.17  Aligned_cols=39  Identities=13%  Similarity=0.025  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             489999999852101110467999974337877865656
Q gi|254780805|r  137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      +=-...+.+..+..-|.|..++|+.+|.|.++|.+-++-
T Consensus         8 ~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~   46 (89)
T d2jn6a1           8 EEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIK   46 (89)
T ss_dssp             HHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999999999829985999999979898899999999


No 95 
>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=55.42  E-value=5.5  Score=16.95  Aligned_cols=32  Identities=16%  Similarity=0.066  Sum_probs=23.0

Q ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999852101-11046799997433787786565
Q gi|254780805|r  143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ++..|.++. ..+..+||+.+|.++++|+..++
T Consensus        13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvk   45 (63)
T d2isya1          13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQTVS   45 (63)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             999998558977099999996899443999999


No 96 
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]}
Probab=54.34  E-value=0.29  Score=25.23  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHHHHCCCC-HH
Q ss_conf             33357567777764--------21001354333464112345566----6543102210489999999852101110-46
Q gi|254780805|r   90 KIIAGERRFRAAKM--------ASLSEVPVIIRNVDNKSSLEIAI----VENVQRKDLNPLEEALGYEQLISEYGYT-QN  156 (300)
Q Consensus        90 ~ii~G~rR~rAa~~--------~g~~~ip~iv~~~~d~~~~~~~l----~EN~~R~dl~p~e~A~~~~~l~~~~~~t-~~  156 (300)
                      .|.+|+|||.-.+-        +|...+.-++.-..+...-.+.+    .||-.|..    ++-..+-.|+..+-.. ..
T Consensus        11 iImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~----~Ev~~Lm~l~~~~l~~~~~   86 (228)
T d1ueha_          11 IIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPA----QEVSALMELFVWALDSEVK   86 (228)
T ss_dssp             EECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC------------------CHHHHHHHHHTHH
T ss_pred             EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHH
T ss_conf             964587899987799765899999999999999998769868985411454214543----0267899999999987688


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             79999743378778656565435899998764210
Q gi|254780805|r  157 DIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       157 ~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      ++ ..-|..-.+|-   .+..||+.+++.+..-+-
T Consensus        87 ~~-~~~~i~i~~iG---~~~~lp~~~~~~i~~~e~  117 (228)
T d1ueha_          87 SL-HRHNVRLRIIG---DTSRFNSRLQERIRKSEA  117 (228)
T ss_dssp             HH-HHTTCEEEEES---CCTTSCHHHHHHHHHHHH
T ss_pred             HH-HHCCEEEEEEC---CCCHHHHHHHHHHHHHHH
T ss_conf             88-85357999989---863222356666666788


No 97 
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=53.55  E-value=5.5  Score=16.98  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             HHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999985210111---046799997433787786565
Q gi|254780805|r  142 LGYEQLISEYGY---TQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       142 ~~~~~l~~~~~~---t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+..+|+.+.|+   |..+||++.|.|++++.++..
T Consensus        13 ~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F~   48 (71)
T d2iu5a1          13 KAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQ   48 (71)
T ss_dssp             HHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCS
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             999999998496407799999875716458977767


No 98 
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=53.52  E-value=5.9  Score=16.76  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             CCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985--21011104679999743378778656
Q gi|254780805|r  134 DLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       134 dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|++-|...--.+.  -+...+|..++|+.+|.|+.+|+..-
T Consensus         8 ~L~~rer~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~   49 (61)
T d1ku3a_           8 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIE   49 (61)
T ss_dssp             TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             099999999999847789997789998899798899999999


No 99 
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=53.18  E-value=5  Score=17.24  Aligned_cols=43  Identities=12%  Similarity=0.052  Sum_probs=29.4

Q ss_pred             HCCCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985--210111046799997433787786565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..-+|++-+-. .+.-+  .+..+.|+.+||+.+|.++++|++.+.
T Consensus        26 ~~~~Lt~~q~~-vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~   70 (115)
T d1hsja1          26 KKFNLNYEEIY-ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQ   70 (115)
T ss_dssp             SSCCCCHHHHH-HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHH
T ss_pred             HHCCCCHHHHH-HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             45599999999-9999980689994899999997888535999999


No 100
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=52.77  E-value=6  Score=16.75  Aligned_cols=28  Identities=11%  Similarity=0.176  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf             11046799997433787786565-65435
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR-ILKLP  179 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~  179 (300)
                      .+|.+++|+.+|.|++++.+..+ ....+
T Consensus        19 ~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t   47 (54)
T d1bl0a1          19 PLSLEKVSERSGYSKWHLQRMFKKETGHS   47 (54)
T ss_dssp             CCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf             99999999998939999999999999919


No 101
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.69  E-value=6.1  Score=16.67  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             104899999998521011104679999-74337877865656
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRI  175 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrL  175 (300)
                      +...+.|.-++..+..++++|.--|+. +|+|+.+++..|+=
T Consensus        10 ~~T~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrk   51 (88)
T d2csfa1          10 NITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRW   51 (88)
T ss_dssp             CCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCC
T ss_conf             149999999999999949779999999983180779999808


No 102
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=52.50  E-value=4.6  Score=17.49  Aligned_cols=38  Identities=26%  Similarity=0.321  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHCC------C-CHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998521011------1-046799997433787786565654
Q gi|254780805|r  140 EALGYEQLISEYG------Y-TQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       140 ~A~~~~~l~~~~~------~-t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+..+...+....      + |..+||+.+|.|+.+|.+.+..|.
T Consensus        14 i~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~   58 (100)
T d1v4ra1          14 VATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK   58 (100)
T ss_dssp             HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             999999999849999939883699999998879899999999999


No 103
>d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]}
Probab=52.18  E-value=4.6  Score=17.49  Aligned_cols=28  Identities=14%  Similarity=0.285  Sum_probs=21.9

Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101110467999974337877865656
Q gi|254780805|r  146 QLISEYGYTQNDIGSIVGKSRSHVANILRI  175 (300)
Q Consensus       146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL  175 (300)
                      ....++|  |...|+.||..++.|+..+|-
T Consensus         9 dyv~~~G--QaKaA~~LGv~Q~AIsKAira   36 (61)
T d1d1la_           9 DYAMRFG--QTKTAKDLGVYQSAINKAIHA   36 (61)
T ss_dssp             HHHHHHC--HHHHHHHHTCCTHHHHHHHHT
T ss_pred             HHHHHHC--HHHHHHHCCCCHHHHHHHHHC
T ss_conf             9999977--598999829648899999963


No 104
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=51.87  E-value=6.3  Score=16.59  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985-21-011104679999743378778656
Q gi|254780805|r  134 DLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       134 dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      .|+|-|...-..+. ++ .-.+|.+++|+.+|.|+..|++.-
T Consensus         5 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrerVrqie   46 (68)
T d2p7vb1           5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE   46 (68)
T ss_dssp             CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             399999999999808899986889999999797899999999


No 105
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=51.79  E-value=6.3  Score=16.58  Aligned_cols=41  Identities=10%  Similarity=-0.035  Sum_probs=28.0

Q ss_pred             CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985--210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+|+..+- ..+..+  .++.++++.+||+.+|.+++++++.+.
T Consensus        29 ~~Ls~~q~-~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~   71 (125)
T d1p4xa2          29 LTLSFVEF-TILAIITSQNKNIVLLKDLIETIHHKYPQTVRALN   71 (125)
T ss_dssp             CSSCHHHH-HHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHH
T ss_pred             CCCCHHHH-HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             69999999-99999998037883699999997898424999999


No 106
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=51.14  E-value=6.5  Score=16.52  Aligned_cols=38  Identities=13%  Similarity=0.169  Sum_probs=27.2

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             048999999985210111046799997433787786565
Q gi|254780805|r  136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +|...+ .+..|.....+|..+||+.+|.++++|++.++
T Consensus        15 ~p~r~~-IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~   52 (100)
T d1ub9a_          15 NPVRLG-IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR   52 (100)
T ss_dssp             SHHHHH-HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             CHHHHH-HHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHH
T ss_conf             999999-99876047990199999998625432309999


No 107
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.73  E-value=6.6  Score=16.47  Aligned_cols=34  Identities=29%  Similarity=0.493  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf             999998521011104679999743------3787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr  174 (300)
                      |..|+.-.=..|+||.+++..+|.      |+++|++.=+
T Consensus        13 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~   52 (75)
T d1e3oc2          13 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA   52 (75)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             9999987884365589999999987175025889999997


No 108
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=50.40  E-value=6.7  Score=16.44  Aligned_cols=44  Identities=14%  Similarity=0.087  Sum_probs=29.0

Q ss_pred             HHCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3102210489999999852101-11046799997433787786565
Q gi|254780805|r  130 VQRKDLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       130 ~~R~dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+..++++. ++..+..|.... +.|+.+||+.+|.++++|++.+.
T Consensus        27 ~~~~glt~~-q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~   71 (145)
T d2hr3a1          27 AQADPVQFS-QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLR   71 (145)
T ss_dssp             TCCCHHHHH-HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHCCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             636398999-999999999859997999999997989889999999


No 109
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=50.23  E-value=6.7  Score=16.43  Aligned_cols=62  Identities=23%  Similarity=0.326  Sum_probs=38.8

Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHH--H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf             666543102210489999999852--1-011104679999743378778656565435--89999876
Q gi|254780805|r  125 AIVENVQRKDLNPLEEALGYEQLI--S-EYGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMIR  187 (300)
Q Consensus       125 ~l~EN~~R~dl~p~e~A~~~~~l~--~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l~  187 (300)
                      .++++. ..+|+|-|+-.+-.-+-  + -...|..++|+..|.|.++|.+..+-+...  .+++..+.
T Consensus         7 ~~i~~~-~~~Ls~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k~~l~   73 (83)
T d2o3fa1           7 AIIQSM-KHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVA   73 (83)
T ss_dssp             HHHHHH-GGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHH-HHHCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             999988-8657899999999998299999883199999997989989999999958998999999999


No 110
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=48.86  E-value=7  Score=16.29  Aligned_cols=46  Identities=17%  Similarity=0.094  Sum_probs=29.7

Q ss_pred             HHHHCCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5431022104899999998521--0111046799997433787786565
Q gi|254780805|r  128 ENVQRKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       128 EN~~R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+..-+|++.+-. .+.-+..  ..++|+.+||+.+|.++++|++.+.
T Consensus        20 ~~l~~~glt~~q~~-vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~   67 (135)
T d3broa1          20 IFAKKYDLTGTQMT-IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ   67 (135)
T ss_dssp             HHHHTTTCCHHHHH-HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHCCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99988699999999-9999997079999999999998968868999999


No 111
>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}
Probab=48.85  E-value=6.5  Score=16.52  Aligned_cols=45  Identities=11%  Similarity=0.047  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHCCEEEEE---C-CCCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf             89999999999739879997---1-798228999858-9899999999837
Q gi|254780805|r  249 YLTDLEKKISSKVGLNISIK---H-RNNKGQFCIKYE-TNEQLKIICSLLG  294 (300)
Q Consensus       249 ~i~~le~~L~~~lGtkV~I~---~-~~~kGkI~I~f~-s~eeLe~Il~kL~  294 (300)
                      +-.++.+.|-+..|.-|. .   . ..+.|-+.|.|. +.+.++.-+++|.
T Consensus       338 ~~~~~~~~Ll~~~gV~v~-pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~  387 (394)
T d1c7na_         338 DHKAMEEFMIHKAQIFFD-EGYIFGDGGIGFERINLAAPSSVIQESLERLN  387 (394)
T ss_dssp             CHHHHHHHHHHTTCCCCE-EGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCEEEE-CCHHHCCCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf             999999999986999997-42341889998799999589999999999999


No 112
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=48.51  E-value=7.1  Score=16.26  Aligned_cols=42  Identities=10%  Similarity=0.029  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+|++.+ +..+..+-...+.|+.+||+.+|.++++|++.+.
T Consensus        25 ~~glt~~q-~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~   66 (136)
T d2fbia1          25 QHGLTEQQ-WRVIRILRQQGEMESYQLANQACILRPSMTGVLA   66 (136)
T ss_dssp             HHTCCHHH-HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             84979999-9999999976998999999998878988999999


No 113
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=47.59  E-value=7.3  Score=16.16  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=20.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1046799997433787786565654
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++..++|+.+|.|+++|...|..|.
T Consensus        26 l~~~~La~~~~vSr~tvr~Al~~L~   50 (69)
T d2hs5a1          26 LSEPDICAALDVSRNTVREAFQILI   50 (69)
T ss_dssp             ECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             6999999998979899999999999


No 114
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=46.68  E-value=7.6  Score=16.08  Aligned_cols=42  Identities=7%  Similarity=0.049  Sum_probs=30.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0221048999999985210111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .-+|++-+ +..+..+...-+.|+.+||+.+|.++++|++.+.
T Consensus        29 ~~~Lt~~q-~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~   70 (138)
T d1jgsa_          29 PLDITAAQ-FKVLCSIRCAACITPVELKKVLSVDLGALTRMLD   70 (138)
T ss_dssp             TTTSCHHH-HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             86989999-9998868718098999999997878857999999


No 115
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=45.76  E-value=7.8  Score=15.99  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=22.9

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        13 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~   45 (73)
T d1t56a1          13 ENLLEDRPLADISVDDLAKGAGISRPTFYFYFP   45 (73)
T ss_dssp             HHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999997591507799999986988889988884


No 116
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}
Probab=45.66  E-value=7.9  Score=15.98  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=13.6

Q ss_pred             EEEEEEECCHHHHHHHHHHHCC
Q ss_conf             2899985898999999998375
Q gi|254780805|r  274 GQFCIKYETNEQLKIICSLLGE  295 (300)
Q Consensus       274 GkI~I~f~s~eeLe~Il~kL~~  295 (300)
                      |+|.+-.-+.++++++.+.|.+
T Consensus       385 ~Ri~~ag~~~~~i~~~a~aI~~  406 (412)
T d1ajsa_         385 GRINMCGLTTKNLDYVATSIHE  406 (412)
T ss_dssp             SEEEGGGCCTTTHHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHHH
T ss_conf             8688336988889999999999


No 117
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=45.12  E-value=8  Score=15.92  Aligned_cols=31  Identities=13%  Similarity=0.158  Sum_probs=23.6

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...++.+.|   .|-.+||+..|.|++++.++..
T Consensus        15 a~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~   48 (68)
T d2id3a1          15 AGDALAADGFDALDLGEIARRAGVGKTTVYRRWG   48 (68)
T ss_dssp             HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999998493407799999997868879999985


No 118
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]}
Probab=44.41  E-value=0.54  Score=23.44  Aligned_cols=17  Identities=18%  Similarity=0.309  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             56543589999876421
Q gi|254780805|r  174 RILKLPSSVREMIRKEE  190 (300)
Q Consensus       174 rLl~L~~~i~~~l~~~~  190 (300)
                      .+-.||+.+++.+..-+
T Consensus       102 ~~~~lp~~l~~~i~~~e  118 (229)
T d1f75a_         102 FIDDLPDHTKKAVLEAK  118 (229)
T ss_dssp             CGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             22343688888899999


No 119
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=44.11  E-value=8.3  Score=15.82  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=28.9

Q ss_pred             CCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             022104899999998521--0111046799997433787786565
Q gi|254780805|r  132 RKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       132 R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+|++.+ +..+..+..  +.++|+.+||+.++.++++|++.+.
T Consensus        29 ~~~Lt~~q-~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~   72 (125)
T d1p4xa1          29 EVDMTIKE-FILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIK   72 (125)
T ss_dssp             TCSSCHHH-HHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHH
T ss_pred             HCCCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             74998899-999999998436986799999996888243999999


No 120
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}
Probab=44.09  E-value=8.3  Score=15.82  Aligned_cols=37  Identities=3%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             HHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf             999999739879997179822899985898999999998375
Q gi|254780805|r  254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE  295 (300)
Q Consensus       254 e~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~  295 (300)
                      -.+|.+..|.-+    .. .++|.+-+-+.++++++.+.|.+
T Consensus       362 ~~~L~~e~gV~~----~p-g~Ris~a~~~~~~i~~la~ai~~  398 (401)
T d7aata_         362 VERLTKEFSIYM----TK-DGRISVAGVASSNVGYLAHAIHQ  398 (401)
T ss_dssp             HHHHHHHHCEEC----CT-TCEEEGGGCCTTTHHHHHHHHHH
T ss_pred             HHHHHHHCCEEE----CC-CCEEEECCCCHHHHHHHHHHHHH
T ss_conf             999998299998----89-71798526998889999999999


No 121
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}
Probab=43.62  E-value=8.4  Score=15.78  Aligned_cols=42  Identities=10%  Similarity=0.083  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHCCEEEEEC----CCCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf             999999997398799971----798228999858-9899999999837
Q gi|254780805|r  252 DLEKKISSKVGLNISIKH----RNNKGQFCIKYE-TNEQLKIICSLLG  294 (300)
Q Consensus       252 ~le~~L~~~lGtkV~I~~----~~~kGkI~I~f~-s~eeLe~Il~kL~  294 (300)
                      ++..++-+.-|.-|. ..    ....|-+.|.|. +.++++.-+++|.
T Consensus       343 ~~~~~ll~~~gV~v~-PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~  389 (395)
T d1xi9a_         343 EFVLDVLHNAHVLFV-HGSGFGEYGAGHFRAVFLPPIEILEEAMDRFE  389 (395)
T ss_dssp             HHHHHHHHHHCEECE-EGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEE-CCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             999999996999998-47332889979799996489999999999999


No 122
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=43.51  E-value=8.5  Score=15.77  Aligned_cols=43  Identities=21%  Similarity=0.166  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999852--1011104679999743378778656565
Q gi|254780805|r  133 KDLNPLEEALGYEQLI--SEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~--~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      -+|++.+-..- ..+.  ++.++|+.+||+.++.++++|++.+.-+
T Consensus        29 ~~Ls~~q~~vL-~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~L   73 (115)
T d2frha1          29 FSISFEEFAVL-TYISENKEKEYYLKDIINHLNYKQPQVVKAVKIL   73 (115)
T ss_dssp             TCCCHHHHHHH-HHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHH-HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             59899999999-9998089999889999999797886899999999


No 123
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}
Probab=42.44  E-value=8.8  Score=15.66  Aligned_cols=21  Identities=10%  Similarity=0.393  Sum_probs=15.0

Q ss_pred             EEEEEEECCHHHHHHHHHHHC
Q ss_conf             289998589899999999837
Q gi|254780805|r  274 GQFCIKYETNEQLKIICSLLG  294 (300)
Q Consensus       274 GkI~I~f~s~eeLe~Il~kL~  294 (300)
                      ++|.|.+-+.++++++.+.+.
T Consensus       374 ~Ri~~a~~~~~~i~~~~~ai~  394 (397)
T d3tata_         374 GRMCVAGLNTANVQRVAKAFA  394 (397)
T ss_dssp             SCCBTTSCCTTTHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHH
T ss_conf             879852599889999999999


No 124
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=42.33  E-value=8.8  Score=15.65  Aligned_cols=38  Identities=8%  Similarity=0.120  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999985210111046799997433787786565654
Q gi|254780805|r  138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      ++.-..|..+.+ +| +-...|+.+|.|++.|++.++-++
T Consensus         3 l~~L~~f~~v~e-~g-s~~~AA~~L~isq~avs~~i~~LE   40 (89)
T d1ixca1           3 FRQLKYFIAVAE-AG-NMAAAAKRLHVSQPPITRQMQALE   40 (89)
T ss_dssp             HHHHHHHHHHHH-HS-SHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HC-CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             899999999998-09-999999985899278899999998


No 125
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=42.31  E-value=8.7  Score=15.70  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011---1046799997433787786565
Q gi|254780805|r  144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...++.+.|   .|.++||+..|.|++++.++..
T Consensus        10 a~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~   43 (71)
T d1jt6a1          10 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFK   43 (71)
T ss_dssp             HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             9999998591406799999987858759988884


No 126
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=42.02  E-value=8.9  Score=15.62  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf             999998521011104679999743------3787786565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR  174 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr  174 (300)
                      |..|+.-.=..|+||.+++..+|.      |+++|.+.=+
T Consensus         9 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~   48 (72)
T d1au7a2           9 ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN   48 (72)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             9999987742686299999999986186555037788885


No 127
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=42.00  E-value=8.9  Score=15.62  Aligned_cols=41  Identities=20%  Similarity=-0.020  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             221048999999985210111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -+|++.+ +..+.-+...-+.|+.+||+.+|.++++|++.+.
T Consensus        37 ~~Lt~~q-~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~   77 (162)
T d2fxaa1          37 YDLNINE-HHILWIAYQLNGASISEIAKFGVMHVSTAFNFSK   77 (162)
T ss_dssp             GTCCHHH-HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             5999899-9999652118991899999997699403199899


No 128
>d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=41.41  E-value=9.1  Score=15.56  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998521011104679999743378778656565
Q gi|254780805|r  141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      -..|..+.+. | +-...|+.+|.|+++|++.|+-+
T Consensus        11 L~~f~~v~~~-g-s~t~AA~~l~isq~avs~~l~~l   44 (89)
T d2esna1          11 LLVFDALYRH-R-NVGTAASELAISASAFSHALGRL   44 (89)
T ss_dssp             HHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-C-CHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             9999999980-9-99999998779984755999999


No 129
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=41.03  E-value=8.1  Score=15.89  Aligned_cols=30  Identities=10%  Similarity=0.248  Sum_probs=23.2

Q ss_pred             HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9852101---11046799997433787786565
Q gi|254780805|r  145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.   +.|..+||+..|.|++++.++..
T Consensus        13 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~   45 (75)
T d2id6a1          13 VEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK   45 (75)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998393516799999884998889988887


No 130
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=39.47  E-value=9.8  Score=15.37  Aligned_cols=30  Identities=20%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||++.|.|++++.++..
T Consensus        14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~   46 (69)
T d2fq4a1          14 YELLLESGFKAVTVDKIAERAKVSKATIYKWWP   46 (69)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998392407799999997858879999987


No 131
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=39.27  E-value=9.8  Score=15.35  Aligned_cols=41  Identities=10%  Similarity=0.144  Sum_probs=28.3

Q ss_pred             CCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             22104899999998521-0111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLIS-EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      -++++.+ +..+..+.+ .-++|+.+||+.++.++++|++.++
T Consensus        27 ~glt~~~-~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~   68 (140)
T d3deua1          27 LELTQTH-WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLD   68 (140)
T ss_dssp             TTCCHHH-HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCCCHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             6979999-99999998749995699999997877767889999


No 132
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.16  E-value=9.9  Score=15.34  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             99999998521011104679999-7433787786565
Q gi|254780805|r  139 EEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR  174 (300)
Q Consensus       139 e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr  174 (300)
                      |.|.-++..+..++++|.--|+. +|+|+.+++..|+
T Consensus         5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~   41 (83)
T d2o4aa1           5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILR   41 (83)
T ss_dssp             THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHC
T ss_conf             9999999999994977999999998318077999981


No 133
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=39.12  E-value=9.9  Score=15.33  Aligned_cols=29  Identities=14%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---11046799997433787786565
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.   +.|..+||++.|.|++++.++..
T Consensus        18 ~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~   49 (78)
T d2o7ta1          18 NLYRTHHHDSLTMENIAEQAGVGVATLYRNFP   49 (78)
T ss_dssp             HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998491406799999883998879999886


No 134
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=39.00  E-value=8.5  Score=15.74  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=24.2

Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5210111046799997433787786565654358999
Q gi|254780805|r  147 LISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR  183 (300)
Q Consensus       147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~  183 (300)
                      .+..|| +...+|+.+|.|++.|+.-   -++-|+..
T Consensus         6 vi~~FG-~~~k~A~algis~~AVsqW---Ge~VPe~R   38 (61)
T d1rzsa_           6 VIDHFG-TQRAVAKALGISDAAVSQW---KEVIPEKD   38 (61)
T ss_dssp             HHHHHS-SHHHHHHHHTCCHHHHHHC---CSBCCHHH
T ss_pred             HHHHHC-CHHHHHHHHCCCHHHHHHH---HCCCCHHH
T ss_conf             999957-7999999969989999988---63076989


No 135
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=38.57  E-value=10  Score=15.28  Aligned_cols=23  Identities=13%  Similarity=0.125  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|..+||+..|.|++++.++..
T Consensus        26 ~~s~~~Ia~~agvs~~~lY~~F~   48 (77)
T d2gfna1          26 AVTTRAVAEESGWSTGVLNHYFG   48 (77)
T ss_dssp             GCCHHHHHHHHSSCHHHHHHHTS
T ss_pred             CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             05799999987888779988883


No 136
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}
Probab=38.23  E-value=10  Score=15.25  Aligned_cols=21  Identities=10%  Similarity=0.184  Sum_probs=10.7

Q ss_pred             EEEEEEECCHHHHHHHHHHHC
Q ss_conf             289998589899999999837
Q gi|254780805|r  274 GQFCIKYETNEQLKIICSLLG  294 (300)
Q Consensus       274 GkI~I~f~s~eeLe~Il~kL~  294 (300)
                      ++|.+..-+.+.++.+.+.|.
T Consensus       385 ~Ris~~g~~~~~i~~l~~ai~  405 (412)
T d1yaaa_         385 GRASIAGLNQGNVEYVAKAID  405 (412)
T ss_dssp             SEEEGGGCCTTTHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHH
T ss_conf             879851598888999999999


No 137
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=37.43  E-value=11  Score=15.17  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=22.8

Q ss_pred             HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998521011--104679999743378778656565
Q gi|254780805|r  144 YEQLISEYG--YTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       144 ~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ...|..++|  -|.+|||+.+|.+...|...|.-.
T Consensus        21 ~~~l~q~lgRePT~~EiA~~l~~~~e~V~~~l~a~   55 (57)
T d1l0oc_          21 KDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAV   55 (57)
T ss_dssp             HHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99999872999899999999793999999999983


No 138
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=36.20  E-value=11  Score=15.04  Aligned_cols=29  Identities=24%  Similarity=0.132  Sum_probs=22.7

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---11046799997433787786565
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.   +.|-.+||+..|.|++++.++..
T Consensus        15 ~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~   46 (79)
T d2fbqa1          15 QLFAEKGFAETSLRLITSKAGVNLAAVNYHFG   46 (79)
T ss_dssp             HHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998693504099999998828557878776


No 139
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=36.13  E-value=11  Score=15.04  Aligned_cols=30  Identities=10%  Similarity=0.122  Sum_probs=23.1

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|..+||++.|.|++++.++..
T Consensus        14 ~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~   46 (73)
T d2fx0a1          14 KKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN   46 (73)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998693517699999987848649998884


No 140
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=36.02  E-value=11  Score=15.02  Aligned_cols=29  Identities=24%  Similarity=0.251  Sum_probs=22.6

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---11046799997433787786565
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.   +.|..+||+..|.|++++.++..
T Consensus        16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~   47 (75)
T d2hyja1          16 EIASEEGLDGITIGRLAEELEMSKSGVHKHFG   47 (75)
T ss_dssp             HHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99997590307699999988909899988882


No 141
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}
Probab=35.81  E-value=11  Score=15.00  Aligned_cols=36  Identities=17%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             HHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC
Q ss_conf             99999739879997179822899985898999999998375
Q gi|254780805|r  255 KKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE  295 (300)
Q Consensus       255 ~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~  295 (300)
                      ++|.+..|.-+  -  . .|+|.|..-+.+.++++.+.|.+
T Consensus       356 ~~L~~~~~V~~--~--~-g~Ri~~a~l~~~~i~~l~~ai~~  391 (394)
T d2ay1a_         356 KRIKEEFGIYM--V--G-DSRINIAGLNDNTIPILARAIIE  391 (394)
T ss_dssp             HHHHHHHCEEC--C--T-TCEEEGGGCCTTTHHHHHHHHHH
T ss_pred             HHHHHHCCEEE--C--C-CCEEEECCCCHHHHHHHHHHHHH
T ss_conf             99999689895--6--9-87899537998889999999998


No 142
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.68  E-value=10  Score=15.24  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+|.+++|+.+|.|++++.+..+
T Consensus        19 ~itl~~lA~~~~~S~~~l~r~Fk   41 (54)
T d1d5ya1          19 PLSLDNVAAKAGYSKWHLQRMFK   41 (54)
T ss_dssp             SCCCHHHHTTTSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999999998929999999999


No 143
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=35.18  E-value=11  Score=14.94  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=23.9

Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf             9998521011--1046799997433--787786565654
Q gi|254780805|r  143 GYEQLISEYG--YTQNDIGSIVGKS--RSHVANILRILK  177 (300)
Q Consensus       143 ~~~~l~~~~~--~t~~~lA~~~G~s--~s~V~~~LrLl~  177 (300)
                      +.++|..++|  -|.+|+|+.+|.+  ...|...+++..
T Consensus        17 ~~~~l~qe~gRePt~eEiA~~l~~~l~~ekV~~~l~~~~   55 (60)
T d1ku2a1          17 TARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQ   55 (60)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHCSSCCHHHHHHHGGGSS
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf             999999996899999999998879999999999999755


No 144
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}
Probab=35.11  E-value=11  Score=14.93  Aligned_cols=37  Identities=11%  Similarity=0.238  Sum_probs=20.9

Q ss_pred             HHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC
Q ss_conf             999999973987999717982289998589899999999837
Q gi|254780805|r  253 LEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG  294 (300)
Q Consensus       253 le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~  294 (300)
                      .-.+|.+..|.-+  -   ..|+|.+..-+.++++.+++.|.
T Consensus       357 ~~~~L~~e~gV~~--~---~g~Ri~~a~l~~~~i~~~~~ai~  393 (396)
T d2q7wa1         357 QVLRLREEFGVYA--V---ASGRVNVAGMTPDNMAPLCEAIV  393 (396)
T ss_dssp             HHHHHHHHHCEEC--C---TTCEEEGGGCCTTTHHHHHHHHH
T ss_pred             HHHHHHHHCCEEE--C---CCCEEEECCCCHHHHHHHHHHHH
T ss_conf             9999999689997--7---99879952898788999999999


No 145
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=35.04  E-value=8.2  Score=15.85  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             104679999743378778656565435
Q gi|254780805|r  153 YTQNDIGSIVGKSRSHVANILRILKLP  179 (300)
Q Consensus       153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~  179 (300)
                      .+..++|+.||.|..||.+-.+. -+|
T Consensus         3 Vnk~~lA~iFGVS~~TI~~W~~~-G~P   28 (68)
T d1j9ia_           3 VNKKQLADIFGASIRTIQNWQEQ-GMP   28 (68)
T ss_dssp             EEHHHHHHHTTCCHHHHHHHTTT-TCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHC-CCC
T ss_conf             68999999969988999999988-998


No 146
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=34.62  E-value=12  Score=14.90  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=26.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1048999999985210111046799997433787786565
Q gi|254780805|r  135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |+--|+|..  ..+...++|..++|+.+.+||-.|.+||.
T Consensus         6 L~~~e~aql--DVm~~L~~slhemaR~i~rSR~~ir~Yl~   43 (51)
T d1tc3c_           6 LSDTERAQL--DVMKLLNVSLHEMSRKISRSRHCIRVYLK   43 (51)
T ss_dssp             CCHHHHHHH--HHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             307899988--99999487699999999885999999956


No 147
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}
Probab=34.46  E-value=12  Score=14.87  Aligned_cols=42  Identities=7%  Similarity=0.114  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf             9999999973987999717--98228999858-9899999999837
Q gi|254780805|r  252 DLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG  294 (300)
Q Consensus       252 ~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~  294 (300)
                      ++..+|-...|.-|. ...  ...|-|.|.|. +.++++.-+++|+
T Consensus       326 ~~~~~ll~~~gV~v~-pG~~F~~~g~iRis~~~~~e~l~~al~rl~  370 (375)
T d1o4sa_         326 KFCERLLEEKKVALV-PGSAFLKPGFVRLSFATSIERLTEALDRIE  370 (375)
T ss_dssp             HHHHHHHHHHCEECE-EGGGGTCTTEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEE-ECCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             999999985999999-761158999699997289999999999999


No 148
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.21  E-value=10  Score=15.17  Aligned_cols=29  Identities=14%  Similarity=0.138  Sum_probs=22.3

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.|   .|..+||+..|.|++++.++..
T Consensus        18 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~   49 (76)
T d2fd5a1          18 QALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ   49 (76)
T ss_dssp             HHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf             99998491305699999983899550042089


No 149
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=33.77  E-value=12  Score=14.79  Aligned_cols=29  Identities=17%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.|   .|..+||+..|.|++++.++..
T Consensus        12 ~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~   43 (72)
T d1vi0a1          12 EVIAENGYHQSQVSKIAKQAGVADGTIYLYFK   43 (72)
T ss_dssp             HHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998590415599999987949879988883


No 150
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}
Probab=33.62  E-value=12  Score=14.78  Aligned_cols=43  Identities=9%  Similarity=0.061  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC
Q ss_conf             99999999973987999717--98228999858-9899999999837
Q gi|254780805|r  251 TDLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG  294 (300)
Q Consensus       251 ~~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~  294 (300)
                      .++..+|-+..|.-|. ...  +..|-+.|.|. +.++|+.-+++|.
T Consensus       336 ~~~~~~ll~~~gV~v~-pG~~F~~~~~~Rls~~~~~e~l~~al~rl~  381 (388)
T d1j32a_         336 LDFCSELLDQHQVATV-PGAAFGADDCIRLSYATDLDTIKRGMERLE  381 (388)
T ss_dssp             HHHHHHHHHHHCEECE-EGGGGTCTTBEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCEEEE-ECCCCCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf             9999999986999998-164359999699998389999999999999


No 151
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.10  E-value=12  Score=14.73  Aligned_cols=45  Identities=20%  Similarity=0.094  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHH
Q ss_conf             897899999999997398799971798228999858989999999
Q gi|254780805|r  246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIIC  290 (300)
Q Consensus       246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il  290 (300)
                      ...+...+.+-|.+.||.+.+|+..+++..|.|.-.|.+.|-.++
T Consensus        48 t~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i~~~s~~~~~~lI   92 (105)
T d1r7ma2          48 TFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLI   92 (105)
T ss_dssp             CHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEECGGGHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHHHHH
T ss_conf             999999999999987394589995498479999302789999984


No 152
>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}
Probab=33.03  E-value=12  Score=14.72  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=18.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             1104679999743378778656
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANIL  173 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~L  173 (300)
                      +.|..+||+.||.++..|.+.|
T Consensus        24 ~~tA~~LAk~Lg~~Kk~VNr~L   45 (70)
T d1sfua_          24 YTTAISLSNRLKINKKKINQQL   45 (70)
T ss_dssp             EECHHHHHHHTTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHH
T ss_conf             7049999999598898988999


No 153
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}
Probab=32.49  E-value=13  Score=14.66  Aligned_cols=44  Identities=11%  Similarity=0.231  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHCCEEEEE-CC--CCCEEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf             89999999999739879997-17--98228999858-98999999998375
Q gi|254780805|r  249 YLTDLEKKISSKVGLNISIK-HR--NNKGQFCIKYE-TNEQLKIICSLLGE  295 (300)
Q Consensus       249 ~i~~le~~L~~~lGtkV~I~-~~--~~kGkI~I~f~-s~eeLe~Il~kL~~  295 (300)
                      +-..+.+.|.+. |  |-|. ..  ...|-+.|.|. +.|+++.-+++|.+
T Consensus       333 ~~~~~~~~l~e~-g--V~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~  380 (382)
T d1b5pa_         333 DEVRAAERLLEA-G--VAVVPGTDFAAFGHVRLSYATSEENLRKALERFAR  380 (382)
T ss_dssp             SHHHHHHHHHHT-T--EECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHHC-C--EEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             999999999978-9--79995722589996999974999999999999998


No 154
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=32.30  E-value=13  Score=14.64  Aligned_cols=43  Identities=12%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHCCEEEEE----C-CCCCEEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf             999999999739879997----1-798228999858-98999999998375
Q gi|254780805|r  251 TDLEKKISSKVGLNISIK----H-RNNKGQFCIKYE-TNEQLKIICSLLGE  295 (300)
Q Consensus       251 ~~le~~L~~~lGtkV~I~----~-~~~kGkI~I~f~-s~eeLe~Il~kL~~  295 (300)
                      .++.++|-+..|  |-+.    . ....|-+.|.|. +.|+++.-+++|.+
T Consensus       332 ~~~~~~ll~e~g--V~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~  380 (388)
T d1gdea_         332 KKFSELMLKEAR--VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMER  380 (388)
T ss_dssp             HHHHHHHHHHTC--EECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC--EEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             999999998599--9998104519899997999964999999999999999


No 155
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.29  E-value=13  Score=14.64  Aligned_cols=30  Identities=20%  Similarity=0.216  Sum_probs=22.8

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        19 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~   51 (79)
T d2oi8a1          19 WEQIATAGASALSLNAIAKRMGMSGPALYRYFD   51 (79)
T ss_dssp             HHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCC
T ss_conf             999998690306799999986799774455169


No 156
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=32.19  E-value=13  Score=14.63  Aligned_cols=29  Identities=24%  Similarity=0.240  Sum_probs=22.8

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++.+.|   .|..+||++.|.|++++.++..
T Consensus        16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~   47 (75)
T d3c07a1          16 RLFQERGYDRTTMRAIAQEAGVSVGNAYYYFA   47 (75)
T ss_dssp             HHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99997491407799999987939879998985


No 157
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=32.08  E-value=13  Score=14.62  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21048999999985210-111046799997433787786565
Q gi|254780805|r  134 DLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       134 dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +|++. ++..+..+... .+.|+.+||+.+|.++++|++.+.
T Consensus        25 glt~~-q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~   65 (137)
T d2fbha1          25 GLSQA-RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD   65 (137)
T ss_dssp             CCTTT-HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             97999-999999998769997699999998978989999999


No 158
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=31.98  E-value=13  Score=14.61  Aligned_cols=28  Identities=14%  Similarity=0.082  Sum_probs=22.6

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21011104679999743378778656565
Q gi|254780805|r  148 ISEYGYTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      +.+.| +-...|+.+|.|+++|++.++-+
T Consensus        29 i~~~g-s~~~AA~~l~~sq~avs~~i~~l   56 (127)
T d1b9ma1          29 IALSG-SISQGAKDAGISYKSAWDAINEM   56 (127)
T ss_dssp             HHHHS-SHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHC-CHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             99959-95899988158762999999999


No 159
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=31.76  E-value=13  Score=14.59  Aligned_cols=30  Identities=17%  Similarity=0.348  Sum_probs=22.8

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        14 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~   46 (72)
T d1pb6a1          14 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP   46 (72)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSS
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998592506799999986978679998886


No 160
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=31.71  E-value=13  Score=14.58  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHCCC-CHHHHHHHH---H---HHHHHHHHHHHHHHH
Q ss_conf             9999985210111-046799997---4---337877865656543
Q gi|254780805|r  141 ALGYEQLISEYGY-TQNDIGSIV---G---KSRSHVANILRILKL  178 (300)
Q Consensus       141 A~~~~~l~~~~~~-t~~~lA~~~---G---~s~s~V~~~LrLl~L  178 (300)
                      -.++++|+.+..+ ||++|.+.|   |   .++++||+-|+-+.+
T Consensus        11 l~~I~~li~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eLg~   55 (78)
T d1aoya_          11 VKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGA   55 (78)
T ss_dssp             HHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             999999998488678999999999839850109889999999298


No 161
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=31.38  E-value=10  Score=15.24  Aligned_cols=30  Identities=17%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-.+||+..|.|++++.++..
T Consensus        12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~   44 (73)
T d1sgma1          12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHFFP   44 (73)
T ss_dssp             HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998492417799999986888779999859


No 162
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=31.31  E-value=13  Score=14.54  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             HHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             985210111--046799997433787786565
Q gi|254780805|r  145 EQLISEYGY--TQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~~--t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|+  |-.+||++.|.|++++.++..
T Consensus        22 ~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F~   53 (88)
T d1t33a1          22 LAQFGEYGLHATTRDIAALAGQNIAAITYYFG   53 (88)
T ss_dssp             HHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHS
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHCCCC
T ss_conf             99998754016799999883998443100198


No 163
>d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]}
Probab=30.86  E-value=13  Score=14.49  Aligned_cols=40  Identities=15%  Similarity=0.229  Sum_probs=28.4

Q ss_pred             HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221048999999985210111046799997433787786565
Q gi|254780805|r  131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ...|.++-+.-   ..| ..-|+|..+|++.-|.+.++++|.|.
T Consensus         5 k~~dWh~adI~---AaL-~krG~sLa~lsr~~gls~stl~naL~   44 (74)
T d1nera_           5 KARDWHRADVI---AGL-KKRKLSLSALSRQFGYAPTTLANALE   44 (74)
T ss_dssp             CSSSCCHHHHH---HHH-TTSSCCHHHHHHHHSCCHHHHHHTTT
T ss_pred             CCCCCCHHHHH---HHH-HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             56888999999---999-99688799999990998789999983


No 164
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=30.11  E-value=14  Score=14.41  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=24.4

Q ss_pred             HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011---1046799997433787786565
Q gi|254780805|r  143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +...++.+.|   .|..+||+..|.|++++.++..
T Consensus         9 aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~   43 (69)
T d2np5a1           9 ALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFS   43 (69)
T ss_dssp             HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99999998491406799999883988879988883


No 165
>d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.68  E-value=14  Score=14.36  Aligned_cols=66  Identities=17%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             04620565445333575677777642100135433346411234556665431022104899999998521011104679
Q gi|254780805|r   79 LIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDI  158 (300)
Q Consensus        79 i~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~l  158 (300)
                      +.++|.+.| +-|++|.-=..-+..+|.+.|-+-+.-..                  ||+--+.|.-.-+... .|.+++
T Consensus        16 V~l~PAp~G-tGliag~~vr~ilelaGI~Dv~~K~~GS~------------------n~~N~vkAt~~aL~~~-~t~~~i   75 (81)
T d2qale1          16 VFMQPASEG-TGIIAGGAMRAVLEVAGVHNVLAKAYGST------------------NPINVVRATIDGLENM-NSPEMV   75 (81)
T ss_dssp             EEBCBCCTT-SCEECCHHHHHHHHHHTCCSEECEEEECC------------------CHHHHHHHHHHHHTTC-CCHHHH
T ss_pred             EEEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEECCCCC------------------CHHHHHHHHHHHHHCC-CCHHHH
T ss_conf             999978999-84134779999999829662676758999------------------7899999999999818-999999


Q ss_pred             HHHHHH
Q ss_conf             999743
Q gi|254780805|r  159 GSIVGK  164 (300)
Q Consensus       159 A~~~G~  164 (300)
                      |++-|+
T Consensus        76 A~~RGk   81 (81)
T d2qale1          76 AAKRGK   81 (81)
T ss_dssp             HHHTTC
T ss_pred             HHHHCC
T ss_conf             998286


No 166
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=29.34  E-value=14  Score=14.33  Aligned_cols=29  Identities=7%  Similarity=0.047  Sum_probs=22.5

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.|   .|-.+||++.|.|++++.++..
T Consensus        13 ~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~   44 (68)
T d2d6ya1          13 AEFARHGIAGARIDRIAAEARANKQLIYAYYG   44 (68)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998592506799999887846628988874


No 167
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.90  E-value=7.7  Score=16.02  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2210489999999852---10111046799997433787786565
Q gi|254780805|r  133 KDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       133 ~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+|++.+- ..+..|.   ...++|+.+||+.+|.++++|++.+.
T Consensus        58 ~gLt~~q~-~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~  101 (172)
T d2fbka1          58 SGLNAAGW-DLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIV  101 (172)
T ss_dssp             TTCCHHHH-HHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHH
T ss_pred             CCCCHHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             69799999-999999851899996899999997867857999999


No 168
>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.64  E-value=15  Score=14.25  Aligned_cols=24  Identities=8%  Similarity=0.069  Sum_probs=17.8

Q ss_pred             CCEEEEEEE-CCHHHHHHHHHHHCC
Q ss_conf             822899985-898999999998375
Q gi|254780805|r  272 NKGQFCIKY-ETNEQLKIICSLLGE  295 (300)
Q Consensus       272 ~kGkI~I~f-~s~eeLe~Il~kL~~  295 (300)
                      ..|-|.|.| .+.+.++..+++|++
T Consensus       390 ~~~~iRis~~~~~~~l~~a~~rl~~  414 (418)
T d1w7la_         390 FDHYIRFCFVKDEATLQAMDEKLRK  414 (418)
T ss_dssp             SCSEEEEECCCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             7997999973899999999999999


No 169
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=28.47  E-value=15  Score=14.23  Aligned_cols=29  Identities=14%  Similarity=0.141  Sum_probs=22.5

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---11046799997433787786565
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.   +.|-++||+..|.|++++.++..
T Consensus        16 ~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~   47 (71)
T d1ui5a1          16 DLFDRRGYESTTLSEIVAHAGVTKGALYFHFA   47 (71)
T ss_dssp             HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998594626799999987948769998982


No 170
>d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]}
Probab=27.94  E-value=15  Score=14.17  Aligned_cols=46  Identities=11%  Similarity=0.108  Sum_probs=27.3

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             852101---1104679999743378778656565435899998764210
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI  191 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i  191 (300)
                      .++.+.   .-||+++|+.+|.||.+..+--.=.+---+-+..|.+.-+
T Consensus        27 e~~~~~~~ekktqeqiAeelGisr~tLyrWrt~dk~FI~y~nevAd~~l   75 (120)
T d2ao9a1          27 ELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL   75 (120)
T ss_dssp             HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             0011000334149999999580188898876066269999999999999


No 171
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=27.59  E-value=15  Score=14.13  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=24.7

Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998521011--104679999743378778656565
Q gi|254780805|r  143 GYEQLISEYG--YTQNDIGSIVGKSRSHVANILRIL  176 (300)
Q Consensus       143 ~~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~LrLl  176 (300)
                      ++.+|..++|  -|.+|||+.+|.+...+...+...
T Consensus        15 a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~~~   50 (77)
T d1rp3a1          15 VVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKI   50 (77)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             999999998869799999999794999999999997


No 172
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.52  E-value=15  Score=14.12  Aligned_cols=35  Identities=11%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             HHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_conf             9998521011-104679999743-----3787786565654
Q gi|254780805|r  143 GYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILK  177 (300)
Q Consensus       143 ~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~  177 (300)
                      .+++++.... .||++|.+.+..     +++|||+.|+=+.
T Consensus         6 ~I~~li~~~~i~tQ~eL~~~L~~~Gi~vTQaTlSRDL~eLg   46 (75)
T d1b4aa1           6 KIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQ   46 (75)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC
T ss_conf             99999986897789999999998598630899997999929


No 173
>d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]}
Probab=27.14  E-value=16  Score=14.08  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=19.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      |.+..+||.+.|.|..+|.+.++
T Consensus        66 G~n~~eLA~kY~lS~~~I~~Ii~   88 (94)
T d1rr7a_          66 GRNVSELTTRYGVTFNTVYKAIR   88 (94)
T ss_dssp             SSCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99899999998977999999999


No 174
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=26.90  E-value=16  Score=14.05  Aligned_cols=29  Identities=7%  Similarity=0.046  Sum_probs=22.2

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---11046799997433787786565
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++.+.   +.|-.+||++.|.|++.+.++..
T Consensus        15 ~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~   46 (68)
T d2g7la1          15 ALMRAEGLEKVTMRRLAQELDTGPASLYVYVA   46 (68)
T ss_dssp             HHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998490307899999997828767628775


No 175
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=26.78  E-value=16  Score=14.04  Aligned_cols=29  Identities=10%  Similarity=0.198  Sum_probs=22.4

Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             852101---11046799997433787786565
Q gi|254780805|r  146 QLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +++.+.   +.|-.+||++.|.|++++.++..
T Consensus        14 ~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~   45 (72)
T d1zk8a1          14 EIADANGVQEVTLASLAQTLGVRSPSLYNHVK   45 (72)
T ss_dssp             HHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998697756699999995979999989883


No 176
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=26.76  E-value=16  Score=14.04  Aligned_cols=23  Identities=4%  Similarity=0.137  Sum_probs=20.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|-.+||++.|.|++++.++..
T Consensus        23 ~~t~~~Ia~~agvs~~~iy~hF~   45 (68)
T d1z0xa1          23 QLSMRKVAKQLGVQAPAIYWYFK   45 (68)
T ss_dssp             GCCHHHHHHHHTSCHHHHHTTCS
T ss_pred             CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             16799999987726568999629


No 177
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=26.73  E-value=16  Score=14.03  Aligned_cols=29  Identities=24%  Similarity=0.205  Sum_probs=22.5

Q ss_pred             HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8521011---1046799997433787786565
Q gi|254780805|r  146 QLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .++.+.|   .|..+||++.|.|++++.++..
T Consensus        22 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~   53 (81)
T d1rkta1          22 TVFKRKGFELTTMKDVVEESGFSRGGVYLYFS   53 (81)
T ss_dssp             HHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             99998592517799999986949889988884


No 178
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.68  E-value=16  Score=13.91  Aligned_cols=23  Identities=17%  Similarity=0.417  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|-.+||+..|.|++++.++..
T Consensus        24 ~~s~~~Ia~~agvs~~~iY~~F~   46 (74)
T d2g7sa1          24 SFSYADISQVVGIRNASIHHHFP   46 (74)
T ss_dssp             GCCHHHHHHHHCCCHHHHHHHCS
T ss_pred             CCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             06799999987818416988883


No 179
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.85  E-value=17  Score=13.81  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             HHHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_conf             99998521011-104679999743-----3787786565654
Q gi|254780805|r  142 LGYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILK  177 (300)
Q Consensus       142 ~~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~  177 (300)
                      ..+++++.... .||++|...+-.     +++|||+.|+-+.
T Consensus         7 ~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRDL~eLg   48 (63)
T d2p5ka1           7 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH   48 (63)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC
T ss_conf             999999984897889999999998698752899887899919


No 180
>d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]}
Probab=24.77  E-value=17  Score=13.80  Aligned_cols=38  Identities=8%  Similarity=0.233  Sum_probs=29.5

Q ss_pred             HCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf             3987999717982289998589899999999837564569
Q gi|254780805|r  261 VGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY  300 (300)
Q Consensus       261 lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~~~~~  300 (300)
                      .+.||...-.+.  .|.+.-++.|+|..++..|++.||++
T Consensus        28 ~k~KVq~~IQGd--~vRVtgKkrDdLQ~vi~llk~~d~~~   65 (74)
T d1in0a2          28 SKIKVQTQIQGE--QVRVTGKSRDDLQAVIQLVKSAELGQ   65 (74)
T ss_dssp             HTCSEEEEEETT--EEEEEESCHHHHHHHHHHHHHSCCSS
T ss_pred             CCCCCEEEECCC--EEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf             388415997582--77863788799999999998327699


No 181
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.65  E-value=17  Score=13.79  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=25.4

Q ss_pred             HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998521011-----1046799997433787786565654
Q gi|254780805|r  142 LGYEQLISEYG-----YTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       142 ~~~~~l~~~~~-----~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .+.+.+.++.+     +....+|+++|..||.|-|.||=+.
T Consensus        19 eAv~hIf~eL~g~EGllvASkiADrvgiTRSVIVNALRK~E   59 (91)
T d2b0la1          19 EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE   59 (91)
T ss_dssp             HHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             99999999738976547415554651853999999998764


No 182
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=24.23  E-value=18  Score=13.74  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|-.+||++.|.|++++.++..
T Consensus        20 ~~ti~~Ia~~agvs~~~~Y~~F~   42 (69)
T d2i10a1          20 GTSITDLTKALGINPPSLYAAFG   42 (69)
T ss_dssp             TCCHHHHHHHHTCCHHHHHHHHC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             27799999986878629988885


No 183
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=24.01  E-value=18  Score=13.71  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99852101---11046799997433787786565
Q gi|254780805|r  144 YEQLISEY---GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       144 ~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+++.+.   +.|..+||+..|.|++++.++..
T Consensus        13 a~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~   46 (74)
T d1v7ba1          13 AIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP   46 (74)
T ss_dssp             HHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC
T ss_conf             9999998595635799999884969223855079


No 184
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=24.01  E-value=18  Score=13.71  Aligned_cols=47  Identities=13%  Similarity=0.144  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCC
Q ss_conf             9999999997398799971798228999-85898999999998375645
Q gi|254780805|r  251 TDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDF  298 (300)
Q Consensus       251 ~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~  298 (300)
                      ..+..+|. ..|..+.|..++.-.+|.+ +|.+.++.+.++++|.+..+
T Consensus        20 ~~l~~~L~-~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~G~   67 (77)
T d1utaa_          20 ETVRAQLA-FEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGH   67 (77)
T ss_dssp             HHHHHHHH-HHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCC
T ss_pred             HHHHHHHH-HCCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf             99999998-6588516537996899997784999999999999998699


No 185
>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}
Probab=23.88  E-value=18  Score=13.70  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=17.7

Q ss_pred             CCEEEEEEE-CCHHHHHHHHHHHCC
Q ss_conf             822899985-898999999998375
Q gi|254780805|r  272 NKGQFCIKY-ETNEQLKIICSLLGE  295 (300)
Q Consensus       272 ~kGkI~I~f-~s~eeLe~Il~kL~~  295 (300)
                      ..|-|.|.| .+.|+++.-+++|.+
T Consensus       342 ~~~~iRis~~~~~e~i~~ai~rL~~  366 (368)
T d1v2da_         342 PKDLFRFAFCKTEEELHLALERLGR  366 (368)
T ss_dssp             CTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             8998999964999999999999998


No 186
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}
Probab=23.78  E-value=18  Score=13.68  Aligned_cols=29  Identities=10%  Similarity=0.070  Sum_probs=22.6

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10111046799997433787786565654
Q gi|254780805|r  149 SEYGYTQNDIGSIVGKSRSHVANILRILK  177 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~  177 (300)
                      .....|.+++|+++|.+...+.+.||.+.
T Consensus        31 ~~gp~s~~eLA~~~g~~~~~l~rlLr~l~   59 (85)
T d1tw3a1          31 LAGARTVKALAARTDTRPEALLRLIRHLV   59 (85)
T ss_dssp             HTTCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             54999999999884929269999999998


No 187
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.75  E-value=12  Score=14.88  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=22.9

Q ss_pred             HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98521011---1046799997433787786565
Q gi|254780805|r  145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      .+++.+.|   .|-++||+..|.|++++.++..
T Consensus         6 ~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~   38 (65)
T d2np3a1           6 RVCFAERGFDATSLRRIAETAGVDQSLVHHFYG   38 (65)
T ss_dssp             HHHC---------------------------CC
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             999998790407799999987868879998887


No 188
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=22.80  E-value=19  Score=13.56  Aligned_cols=23  Identities=13%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11046799997433787786565
Q gi|254780805|r  152 GYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       152 ~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      +.|-.+||++.|.|++++.++..
T Consensus        19 ~~s~~~Ia~~agvs~~tiy~~F~   41 (62)
T d2vkva1          19 GLTTRKLAQKLGVEQPTLYWHVK   41 (62)
T ss_dssp             HCCHHHHHHHHTSCHHHHHHHSC
T ss_pred             CCCHHHHHHHHCCCHHHHHHHCC
T ss_conf             17899999880988889998887


No 189
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=22.12  E-value=19  Score=13.48  Aligned_cols=25  Identities=8%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0111046799997433787786565
Q gi|254780805|r  150 EYGYTQNDIGSIVGKSRSHVANILR  174 (300)
Q Consensus       150 ~~~~t~~~lA~~~G~s~s~V~~~Lr  174 (300)
                      ..+.|-.+||+..|.|++++.++..
T Consensus        17 ~G~~ti~~Ia~~agvs~~~iY~~F~   41 (65)
T d2g7ga1          17 DGDFRMPDLARHLNVQVSSIYHHAK   41 (65)
T ss_dssp             HSSCCHHHHHHHTTSCHHHHHTTSC
T ss_pred             CCCCCHHHHHHHHCCCCCCHHHCCC
T ss_conf             6797899999885706131311589


No 190
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=21.69  E-value=20  Score=13.42  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=20.4

Q ss_pred             HHCCCCHHHHHHHHH-HHHHHHHHHHH
Q ss_conf             101110467999974-33787786565
Q gi|254780805|r  149 SEYGYTQNDIGSIVG-KSRSHVANILR  174 (300)
Q Consensus       149 ~~~~~t~~~lA~~~G-~s~s~V~~~Lr  174 (300)
                      +..++|-.+||..|| ++.++|...++
T Consensus        56 ~~t~~sl~~IG~~fg~rdHsTV~~a~k   82 (110)
T d1l8qa1          56 KVCSASLIEIARAFKRKDHTTVIHAIR   82 (110)
T ss_dssp             HHHCCCHHHHHHHSSCCCSTHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf             870899999999958997109999999


No 191
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}
Probab=21.46  E-value=20  Score=13.39  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=14.1

Q ss_pred             CEEEEEEEC-CHHHHHHHHHHHCC
Q ss_conf             228999858-98999999998375
Q gi|254780805|r  273 KGQFCIKYE-TNEQLKIICSLLGE  295 (300)
Q Consensus       273 kGkI~I~f~-s~eeLe~Il~kL~~  295 (300)
                      .+-+.|.|. +.|+|+.-++.|.+
T Consensus       359 ~~~iRis~~~~~~~l~~a~~~L~~  382 (389)
T d2gb3a1         359 KKEIRIACVLEKDLLSRAIDVLME  382 (389)
T ss_dssp             SSEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             998999972899999999999999


No 192
>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}
Probab=20.36  E-value=21  Score=13.25  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=15.1

Q ss_pred             CEEEEEEEC--CHHHHHHHHHHHCC
Q ss_conf             228999858--98999999998375
Q gi|254780805|r  273 KGQFCIKYE--TNEQLKIICSLLGE  295 (300)
Q Consensus       273 kGkI~I~f~--s~eeLe~Il~kL~~  295 (300)
                      .|-|.|.|.  +.++++.-+++|.+
T Consensus       384 ~~~iRls~~~~~~e~l~~a~~rL~~  408 (420)
T d1vp4a_         384 SPSMRLSFCLPPDEKIVEGIKRLRE  408 (420)
T ss_dssp             CSEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             9979999584999999999999999


Done!