Query gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter asiaticus str. psy62] Match_columns 300 No_of_seqs 186 out of 3259 Neff 6.5 Searched_HMMs 13730 Date Wed Jun 1 06:40:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780805.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1vk1a_ d.268.1.2 (A:) Hypothe 100.0 1E-37 7.3E-42 259.4 -5.8 190 39-233 3-209 (232) 2 d1vz0a2 d.268.1.1 (A:23-115) P 99.9 3.3E-28 2.4E-32 198.3 3.3 93 39-132 1-93 (93) 3 d1vz0a1 a.4.14.1 (A:116-208) P 99.9 1.9E-25 1.4E-29 180.6 8.7 91 133-224 1-93 (93) 4 d1xw3a1 d.268.1.4 (A:28-137) S 99.8 4.3E-20 3.1E-24 146.1 5.6 92 37-131 12-110 (110) 5 d1r71a_ a.4.14.1 (A:) Transcri 99.7 9.2E-17 6.7E-21 124.7 9.5 75 124-199 3-77 (114) 6 d2o38a1 a.35.1.13 (A:28-116) H 95.1 0.01 7.6E-07 34.5 3.9 38 137-174 9-46 (89) 7 d1ic8a2 a.35.1.1 (A:87-180) He 94.8 0.021 1.6E-06 32.5 4.9 57 116-174 6-63 (94) 8 d2icta1 a.35.1.3 (A:8-94) Anti 94.4 0.015 1.1E-06 33.5 3.4 32 143-174 5-36 (87) 9 d1ijwc_ a.4.1.2 (C:) HIN recom 94.2 0.019 1.4E-06 32.7 3.6 39 134-174 5-43 (47) 10 d2a6ca1 a.35.1.13 (A:1-69) HTH 94.1 0.024 1.8E-06 32.1 3.9 36 139-174 6-41 (69) 11 d2auwa1 a.35.1.10 (A:88-154) H 93.9 0.022 1.6E-06 32.4 3.4 32 142-173 4-35 (67) 12 d1y7ya1 a.35.1.3 (A:5-73) Rest 93.8 0.031 2.3E-06 31.4 4.0 38 137-174 7-44 (69) 13 d1lmb3_ a.35.1.2 (3:) lambda C 93.1 0.035 2.5E-06 31.1 3.3 37 143-179 16-52 (87) 14 d1x57a1 a.35.1.12 (A:8-85) End 93.1 0.035 2.6E-06 31.1 3.4 38 137-174 4-41 (78) 15 d2ppxa1 a.35.1.3 (A:30-91) Unc 93.1 0.028 2E-06 31.7 2.8 31 144-174 4-34 (62) 16 d2b5aa1 a.35.1.3 (A:1-77) Regu 92.9 0.04 2.9E-06 30.7 3.4 35 140-174 11-45 (77) 17 d1b0na2 a.35.1.3 (A:1-68) SinR 92.9 0.041 3E-06 30.6 3.4 33 142-174 4-36 (68) 18 d2r1jl1 a.35.1.2 (L:3-68) P22 92.6 0.047 3.4E-06 30.3 3.3 34 141-174 5-38 (66) 19 d2croa_ a.35.1.2 (A:) cro 434 92.5 0.051 3.7E-06 30.0 3.5 34 141-174 5-38 (65) 20 d1y9qa1 a.35.1.8 (A:4-82) Prob 92.0 0.06 4.4E-06 29.6 3.4 35 140-174 9-43 (79) 21 d1r69a_ a.35.1.2 (A:) 434 C1 r 92.0 0.064 4.7E-06 29.4 3.5 34 141-174 3-36 (63) 22 d1utxa_ a.35.1.3 (A:) Putative 91.9 0.052 3.8E-06 30.0 3.0 31 144-174 6-36 (66) 23 d1hlva1 a.4.1.7 (A:1-66) DNA-b 91.7 0.1 7.3E-06 28.1 4.2 44 131-174 4-47 (66) 24 d1rp3a2 a.4.13.2 (A:164-234) S 91.2 0.32 2.3E-05 24.9 6.3 39 134-174 21-59 (71) 25 d2hwja1 d.268.1.3 (A:4-204) Hy 90.7 0.094 6.9E-06 28.3 3.3 76 37-118 4-90 (201) 26 d1sfxa_ a.4.5.50 (A:) Hypothet 89.3 0.31 2.3E-05 25.0 5.0 49 125-174 8-56 (109) 27 d1s7oa_ a.4.13.3 (A:) Hypothet 86.7 0.39 2.9E-05 24.3 4.2 38 135-174 17-54 (106) 28 d1i5za1 a.4.5.4 (A:138-206) Ca 85.0 0.5 3.7E-05 23.7 4.0 26 151-176 28-53 (69) 29 d1umqa_ a.4.1.12 (A:) Photosyn 83.7 0.54 3.9E-05 23.4 3.7 37 137-174 19-55 (60) 30 d2ofya1 a.35.1.3 (A:3-84) Puta 83.2 0.64 4.7E-05 23.0 3.9 23 152-174 25-47 (82) 31 d1a04a1 a.4.6.2 (A:150-216) Ni 82.8 0.71 5.1E-05 22.7 4.0 38 134-174 6-43 (67) 32 d1biaa1 a.4.5.1 (A:1-63) Bioti 82.6 0.56 4.1E-05 23.4 3.4 31 147-177 14-44 (63) 33 d1or7a1 a.4.13.2 (A:120-187) S 82.3 0.64 4.7E-05 23.0 3.7 38 135-174 19-56 (68) 34 d1fsea_ a.4.6.2 (A:) Germinati 81.8 0.81 5.9E-05 22.3 4.0 39 133-174 3-41 (67) 35 d2d1ha1 a.4.5.50 (A:1-109) Hyp 81.8 1.5 0.00011 20.7 5.7 41 133-174 17-58 (109) 36 d1gdta1 a.4.1.2 (A:141-183) ga 81.5 0.65 4.7E-05 22.9 3.5 31 143-174 10-40 (43) 37 d1z05a1 a.4.5.63 (A:10-80) Tra 81.2 0.93 6.7E-05 21.9 4.2 34 141-174 9-42 (71) 38 d1x2la1 a.35.1.7 (A:9-95) Home 81.2 0.85 6.2E-05 22.2 4.0 42 133-174 7-49 (87) 39 d1ku9a_ a.4.5.36 (A:) DNA-bind 81.2 1.5 0.00011 20.5 5.4 45 129-174 18-63 (151) 40 d1etxa_ a.4.1.12 (A:) FIS prot 80.6 0.79 5.8E-05 22.4 3.6 36 143-178 53-88 (89) 41 d1ntca_ a.4.1.12 (A:) DNA-bind 80.3 0.83 6E-05 22.3 3.6 41 137-178 50-90 (91) 42 d1xsva_ a.4.13.3 (A:) Hypothet 80.0 0.95 6.9E-05 21.9 3.9 38 135-174 19-56 (106) 43 d1jhfa1 a.4.5.2 (A:2-72) LexA 79.8 1.2 8.5E-05 21.3 4.3 41 143-192 13-56 (71) 44 d1yioa1 a.4.6.2 (A:131-200) Re 79.5 1 7.3E-05 21.7 3.9 39 133-174 11-49 (70) 45 d1u2wa1 a.4.5.5 (A:12-119) Cad 79.5 0.78 5.7E-05 22.4 3.3 34 144-177 37-70 (108) 46 d1r1ta_ a.4.5.5 (A:) SmtB repr 77.9 1.2 8.6E-05 21.3 3.8 33 144-177 29-61 (98) 47 d1mkma1 a.4.5.33 (A:1-75) Tran 77.7 1.5 0.00011 20.7 4.2 41 136-176 2-44 (75) 48 d1dwka1 a.35.1.4 (A:1-86) Cyan 77.5 1.2 8.8E-05 21.2 3.8 39 148-186 22-61 (86) 49 d1ft9a1 a.4.5.4 (A:134-213) CO 77.3 0.69 5.1E-05 22.7 2.5 26 151-176 29-54 (80) 50 d1l3la1 a.4.6.2 (A:170-234) Qu 76.7 1.4 9.9E-05 20.9 3.9 38 134-174 4-41 (65) 51 d2gaua1 a.4.5.4 (A:152-232) Tr 76.7 1.2 8.8E-05 21.2 3.6 35 151-194 28-62 (81) 52 d2a61a1 a.4.5.28 (A:5-143) Tra 76.6 1.8 0.00013 20.1 4.5 48 134-191 27-74 (139) 53 d3e5ua1 a.4.5.4 (A:148-227) Ch 76.5 1.3 9.3E-05 21.0 3.7 35 151-194 29-63 (80) 54 d1k78a1 a.4.1.5 (A:19-81) Pax- 76.2 1.5 0.00011 20.7 3.9 38 137-175 16-53 (63) 55 d2bgca1 a.4.5.4 (A:138-237) Li 76.1 1.2 8.7E-05 21.2 3.5 34 152-194 31-65 (100) 56 d1j5ya1 a.4.5.1 (A:3-67) Putat 75.9 1.8 0.00013 20.0 4.4 26 152-177 22-47 (65) 57 d1wh6a_ a.35.1.7 (A:) Homeobox 74.8 1.7 0.00012 20.2 4.0 42 133-174 15-57 (101) 58 d1r1ua_ a.4.5.5 (A:) Metal-sen 74.8 1.6 0.00011 20.5 3.8 29 149-177 28-56 (94) 59 d2etha1 a.4.5.28 (A:1-140) Put 74.5 1.7 0.00012 20.3 3.9 42 132-174 27-68 (140) 60 d1s7ea2 a.35.1.7 (A:6-85) Hepa 74.3 0.99 7.2E-05 21.8 2.7 41 134-174 1-42 (80) 61 d1zyba1 a.4.5.4 (A:148-220) Pr 73.3 1.1 7.7E-05 21.6 2.6 37 151-196 26-62 (73) 62 d1pdnc_ a.4.1.5 (C:) Paired pr 73.3 1.9 0.00014 19.9 3.9 38 139-177 20-57 (123) 63 d2cfxa1 a.4.5.32 (A:1-63) Tran 73.0 1.3 9.4E-05 21.0 3.0 29 146-174 13-41 (63) 64 d2nptb1 d.15.2.2 (B:42-123) Mi 72.7 2.4 0.00017 19.3 4.3 49 246-296 20-68 (82) 65 d1z6ra1 a.4.5.63 (A:12-81) Mlc 72.3 1.9 0.00014 20.0 3.7 34 141-174 8-41 (70) 66 d2csba5 a.267.1.1 (A:3-293) To 71.4 2.8 0.00021 18.8 4.5 95 75-170 74-213 (291) 67 d2zcwa1 a.4.5.4 (A:118-199) Tr 71.3 1.2 9E-05 21.1 2.6 26 151-176 28-53 (82) 68 d1ulya_ a.4.5.58 (A:) Hypothet 71.2 2.2 0.00016 19.5 3.8 29 148-176 28-56 (190) 69 d2c60a1 d.15.2.2 (A:43-122) Mi 71.1 2.4 0.00017 19.3 4.0 49 246-296 20-68 (80) 70 d1wh8a_ a.35.1.7 (A:) Homeobox 70.8 2.4 0.00017 19.3 3.9 42 133-174 25-67 (111) 71 d1nr3a_ d.236.1.1 (A:) DNA-bin 70.5 0.2 1.5E-05 26.2 -1.6 22 149-170 2-23 (122) 72 d2cyya1 a.4.5.32 (A:5-64) Puta 70.3 2.4 0.00017 19.3 3.9 30 145-174 10-39 (60) 73 d1s3ja_ a.4.5.28 (A:) Putative 70.1 3 0.00022 18.7 5.5 48 126-174 24-71 (143) 74 d1z91a1 a.4.5.28 (A:8-144) Org 70.0 2.8 0.0002 18.9 4.2 43 131-174 27-69 (137) 75 d1qpza1 a.35.1.5 (A:2-58) Puri 69.6 1.2 9E-05 21.2 2.2 33 154-186 2-35 (57) 76 d2hsga1 a.35.1.5 (A:2-58) Gluc 69.5 1.1 8E-05 21.5 2.0 34 153-186 2-36 (57) 77 d2cg4a1 a.4.5.32 (A:4-66) Regu 68.8 1.8 0.00013 20.0 3.0 31 144-174 11-41 (63) 78 d1jhga_ a.4.12.1 (A:) Trp repr 68.4 3.3 0.00024 18.4 4.4 42 147-188 53-95 (101) 79 d1g2ha_ a.4.1.12 (A:) Transcri 67.7 2.3 0.00016 19.5 3.3 41 135-177 18-58 (61) 80 d3bwga1 a.4.5.6 (A:5-82) Trans 67.0 3.3 0.00024 18.4 4.0 24 154-177 24-47 (78) 81 d3ctaa1 a.4.5.28 (A:5-89) Ta10 66.9 3.4 0.00024 18.3 4.0 27 150-176 19-45 (85) 82 d2hoea1 a.4.5.63 (A:10-71) N-a 64.9 2.4 0.00018 19.3 3.0 30 144-174 5-34 (62) 83 d1i1ga1 a.4.5.32 (A:2-61) LprA 64.8 2.9 0.00021 18.8 3.3 28 147-174 12-39 (60) 84 d1uxda_ a.35.1.5 (A:) Fructose 63.8 1.4 0.0001 20.7 1.6 34 153-186 1-38 (59) 85 d1hw1a1 a.4.5.6 (A:5-78) Fatty 63.1 4.1 0.0003 17.8 4.5 23 154-176 29-51 (74) 86 d1ttya_ a.4.13.2 (A:) Sigma70 63.0 2.6 0.00019 19.0 2.9 41 133-173 17-59 (87) 87 d1efaa1 a.35.1.5 (A:2-60) Lac 63.0 1.4 9.8E-05 20.9 1.4 34 153-186 3-37 (59) 88 d1lnwa_ a.4.5.28 (A:) MexR rep 62.8 4.2 0.0003 17.7 4.2 41 133-174 32-72 (141) 89 d2bv6a1 a.4.5.28 (A:5-140) Tra 61.7 3.4 0.00025 18.3 3.2 41 133-174 30-70 (136) 90 d2ev0a1 a.4.5.24 (A:2-62) Mang 61.6 3.9 0.00028 17.9 3.5 32 143-174 11-43 (61) 91 d2p4wa1 a.4.5.64 (A:1-194) Tra 60.4 4.4 0.00032 17.6 3.7 19 60-78 42-60 (194) 92 d1p4wa_ a.4.6.2 (A:) Transcrip 60.1 4.6 0.00033 17.5 3.7 39 133-174 21-59 (87) 93 d1lj9a_ a.4.5.28 (A:) Transcri 59.6 4.7 0.00035 17.4 4.0 44 130-174 22-65 (144) 94 d2jn6a1 a.4.1.19 (A:1-89) Unch 57.5 5.1 0.00037 17.2 4.5 39 137-175 8-46 (89) 95 d2isya1 a.4.5.24 (A:2-64) Iron 55.4 5.5 0.0004 17.0 3.7 32 143-174 13-45 (63) 96 d1ueha_ c.101.1.1 (A:) Undecap 54.3 0.29 2.1E-05 25.2 -3.3 94 90-191 11-117 (228) 97 d2iu5a1 a.4.1.9 (A:1-71) Trans 53.6 5.5 0.0004 17.0 3.2 33 142-174 13-48 (71) 98 d1ku3a_ a.4.13.2 (A:) Sigma70 53.5 5.9 0.00043 16.8 4.3 40 134-173 8-49 (61) 99 d1hsja1 a.4.5.28 (A:373-487) S 53.2 5 0.00036 17.2 2.9 43 131-174 26-70 (115) 100 d1bl0a1 a.4.1.8 (A:9-62) MarA 52.8 6 0.00043 16.8 3.3 28 152-179 19-47 (54) 101 d2csfa1 a.35.1.7 (A:8-95) DNA- 52.7 6.1 0.00045 16.7 3.4 41 135-175 10-51 (88) 102 d1v4ra1 a.4.5.6 (A:1-100) Tran 52.5 4.6 0.00033 17.5 2.7 38 140-177 14-58 (100) 103 d1d1la_ a.35.1.2 (A:) cro lamb 52.2 4.6 0.00033 17.5 2.6 28 146-175 9-36 (61) 104 d2p7vb1 a.4.13.2 (B:546-613) S 51.9 6.3 0.00046 16.6 3.9 40 134-173 5-46 (68) 105 d1p4xa2 a.4.5.28 (A:126-250) S 51.8 6.3 0.00046 16.6 3.9 41 133-174 29-71 (125) 106 d1ub9a_ a.4.5.28 (A:) Hypothet 51.1 6.5 0.00047 16.5 3.8 38 136-174 15-52 (100) 107 d1e3oc2 a.35.1.1 (C:1-75) Oct- 50.7 6.6 0.00048 16.5 3.7 34 141-174 13-52 (75) 108 d2hr3a1 a.4.5.28 (A:2-146) Pro 50.4 6.7 0.00048 16.4 4.6 44 130-174 27-71 (145) 109 d2o3fa1 a.4.1.20 (A:1-83) Puta 50.2 6.7 0.00049 16.4 5.1 62 125-187 7-73 (83) 110 d3broa1 a.4.5.28 (A:3-137) Tra 48.9 7 0.00051 16.3 5.9 46 128-174 20-67 (135) 111 d1c7na_ c.67.1.3 (A:) Cystalys 48.9 6.5 0.00047 16.5 3.0 45 249-294 338-387 (394) 112 d2fbia1 a.4.5.28 (A:5-140) Pro 48.5 7.1 0.00052 16.3 4.6 42 132-174 25-66 (136) 113 d2hs5a1 a.4.5.6 (A:25-93) Puta 47.6 7.3 0.00054 16.2 4.2 25 153-177 26-50 (69) 114 d1jgsa_ a.4.5.28 (A:) Multiple 46.7 7.6 0.00055 16.1 5.7 42 132-174 29-70 (138) 115 d1t56a1 a.4.1.9 (A:22-94) Ethr 45.8 7.8 0.00057 16.0 3.2 30 145-174 13-45 (73) 116 d1ajsa_ c.67.1.1 (A:) Aspartat 45.7 7.9 0.00057 16.0 3.3 22 274-295 385-406 (412) 117 d2id3a1 a.4.1.9 (A:13-80) Puta 45.1 8 0.00058 15.9 3.1 31 144-174 15-48 (68) 118 d1f75a_ c.101.1.1 (A:) Undecap 44.4 0.54 4E-05 23.4 -3.1 17 174-190 102-118 (229) 119 d1p4xa1 a.4.5.28 (A:1-125) Sta 44.1 8.3 0.0006 15.8 3.1 42 132-174 29-72 (125) 120 d7aata_ c.67.1.1 (A:) Aspartat 44.1 8.3 0.00061 15.8 3.5 37 254-295 362-398 (401) 121 d1xi9a_ c.67.1.1 (A:) Putative 43.6 8.4 0.00062 15.8 3.2 42 252-294 343-389 (395) 122 d2frha1 a.4.5.28 (A:102-216) P 43.5 8.5 0.00062 15.8 4.1 43 133-176 29-73 (115) 123 d3tata_ c.67.1.1 (A:) Aromatic 42.4 8.8 0.00064 15.7 3.6 21 274-294 374-394 (397) 124 d1ixca1 a.4.5.37 (A:1-89) LysR 42.3 8.8 0.00064 15.7 4.4 38 138-177 3-40 (89) 125 d1jt6a1 a.4.1.9 (A:2-72) Multi 42.3 8.7 0.00063 15.7 2.8 31 144-174 10-43 (71) 126 d1au7a2 a.35.1.1 (A:5-76) Pit- 42.0 8.9 0.00065 15.6 3.5 34 141-174 9-48 (72) 127 d2fxaa1 a.4.5.28 (A:6-167) Pro 42.0 8.9 0.00065 15.6 5.5 41 133-174 37-77 (162) 128 d2esna1 a.4.5.37 (A:3-91) Prob 41.4 9.1 0.00066 15.6 3.2 34 141-176 11-44 (89) 129 d2id6a1 a.4.1.9 (A:1-75) Trans 41.0 8.1 0.00059 15.9 2.5 30 145-174 13-45 (75) 130 d2fq4a1 a.4.1.9 (A:9-77) Trans 39.5 9.8 0.00071 15.4 3.0 30 145-174 14-46 (69) 131 d3deua1 a.4.5.28 (A:2-141) Tra 39.3 9.8 0.00072 15.3 4.3 41 133-174 27-68 (140) 132 d2o4aa1 a.35.1.7 (A:370-452) D 39.2 9.9 0.00072 15.3 3.1 36 139-174 5-41 (83) 133 d2o7ta1 a.4.1.9 (A:1-78) Trans 39.1 9.9 0.00072 15.3 3.2 29 146-174 18-49 (78) 134 d1rzsa_ a.35.1.2 (A:) cro p22 39.0 8.5 0.00062 15.7 2.3 33 147-183 6-38 (61) 135 d2gfna1 a.4.1.9 (A:4-80) Proba 38.6 10 0.00073 15.3 3.0 23 152-174 26-48 (77) 136 d1yaaa_ c.67.1.1 (A:) Aspartat 38.2 10 0.00074 15.2 3.5 21 274-294 385-405 (412) 137 d1l0oc_ a.4.13.2 (C:) SigmaF { 37.4 11 0.00077 15.2 3.6 33 144-176 21-55 (57) 138 d2fbqa1 a.4.1.9 (A:2-80) Trans 36.2 11 0.0008 15.0 3.0 29 146-174 15-46 (79) 139 d2fx0a1 a.4.1.9 (A:4-76) Hemol 36.1 11 0.0008 15.0 3.2 30 145-174 14-46 (73) 140 d2hyja1 a.4.1.9 (A:8-82) Putat 36.0 11 0.00081 15.0 2.8 29 146-174 16-47 (75) 141 d2ay1a_ c.67.1.1 (A:) Aromatic 35.8 11 0.00081 15.0 3.3 36 255-295 356-391 (394) 142 d1d5ya1 a.4.1.8 (A:3-56) Rob t 35.7 10 0.00075 15.2 2.3 23 152-174 19-41 (54) 143 d1ku2a1 a.4.13.1 (A:273-332) S 35.2 11 0.00083 14.9 2.8 35 143-177 17-55 (60) 144 d2q7wa1 c.67.1.1 (A:1-396) Asp 35.1 11 0.00083 14.9 3.3 37 253-294 357-393 (396) 145 d1j9ia_ a.6.1.5 (A:) Terminase 35.0 8.2 0.0006 15.8 1.7 26 153-179 3-28 (68) 146 d1tc3c_ a.4.1.2 (C:) Transposa 34.6 12 0.00084 14.9 2.4 38 135-174 6-43 (51) 147 d1o4sa_ c.67.1.1 (A:) Aspartat 34.5 12 0.00085 14.9 3.1 42 252-294 326-370 (375) 148 d2fd5a1 a.4.1.9 (A:1-76) Proba 34.2 10 0.00076 15.2 2.2 29 146-174 18-49 (76) 149 d1vi0a1 a.4.1.9 (A:6-77) Hypot 33.8 12 0.00087 14.8 3.1 29 146-174 12-43 (72) 150 d1j32a_ c.67.1.1 (A:) Aspartat 33.6 12 0.00088 14.8 3.1 43 251-294 336-381 (388) 151 d1r7ma2 d.95.2.1 (A:121-225) D 33.1 12 0.0009 14.7 4.9 45 246-290 48-92 (105) 152 d1sfua_ a.4.5.19 (A:) 34L {Yab 33.0 12 0.0009 14.7 3.8 22 152-173 24-45 (70) 153 d1b5pa_ c.67.1.1 (A:) Aspartat 32.5 13 0.00092 14.7 3.3 44 249-295 333-380 (382) 154 d1gdea_ c.67.1.1 (A:) Aromatic 32.3 13 0.00092 14.6 3.3 43 251-295 332-380 (388) 155 d2oi8a1 a.4.1.9 (A:8-86) Putat 32.3 13 0.00092 14.6 4.0 30 145-174 19-51 (79) 156 d3c07a1 a.4.1.9 (A:15-89) Puta 32.2 13 0.00093 14.6 3.2 29 146-174 16-47 (75) 157 d2fbha1 a.4.5.28 (A:8-144) Tra 32.1 13 0.00093 14.6 5.5 40 134-174 25-65 (137) 158 d1b9ma1 a.4.5.8 (A:-1-126) N-t 32.0 13 0.00093 14.6 3.8 28 148-176 29-56 (127) 159 d1pb6a1 a.4.1.9 (A:14-85) Hypo 31.8 13 0.00094 14.6 2.8 30 145-174 14-46 (72) 160 d1aoya_ a.4.5.3 (A:) Arginine 31.7 13 0.00094 14.6 3.8 38 141-178 11-55 (78) 161 d1sgma1 a.4.1.9 (A:5-77) Putat 31.4 10 0.00074 15.2 1.7 30 145-174 12-44 (73) 162 d1t33a1 a.4.1.9 (A:1-88) Putat 31.3 13 0.00096 14.5 3.2 30 145-174 22-53 (88) 163 d1nera_ a.35.1.2 (A:) Ner {Bac 30.9 13 0.00098 14.5 2.6 40 131-174 5-44 (74) 164 d2np5a1 a.4.1.9 (A:9-77) Trans 30.1 14 0.001 14.4 3.8 32 143-174 9-43 (69) 165 d2qale1 d.14.1.1 (E:78-158) Ri 29.7 14 0.001 14.4 5.2 66 79-164 16-81 (81) 166 d2d6ya1 a.4.1.9 (A:7-74) Putat 29.3 14 0.001 14.3 3.0 29 146-174 13-44 (68) 167 d2fbka1 a.4.5.28 (A:8-179) Tra 28.9 7.7 0.00056 16.0 0.7 41 133-174 58-101 (172) 168 d1w7la_ c.67.1.1 (A:) Kynureni 28.6 15 0.0011 14.2 3.1 24 272-295 390-414 (418) 169 d1ui5a1 a.4.1.9 (A:5-75) A-fac 28.5 15 0.0011 14.2 3.8 29 146-174 16-47 (71) 170 d2ao9a1 a.4.1.17 (A:13-132) Ph 27.9 15 0.0011 14.2 7.6 46 146-191 27-75 (120) 171 d1rp3a1 a.4.13.1 (A:87-163) Si 27.6 15 0.0011 14.1 4.2 34 143-176 15-50 (77) 172 d1b4aa1 a.4.5.3 (A:4-78) Argin 27.5 15 0.0011 14.1 4.2 35 143-177 6-46 (75) 173 d1rr7a_ a.4.1.14 (A:) Middle o 27.1 16 0.0011 14.1 4.1 23 152-174 66-88 (94) 174 d2g7la1 a.4.1.9 (A:16-83) Puta 26.9 16 0.0011 14.1 3.2 29 146-174 15-46 (68) 175 d1zk8a1 a.4.1.9 (A:6-77) Trans 26.8 16 0.0011 14.0 3.4 29 146-174 14-45 (72) 176 d1z0xa1 a.4.1.9 (A:4-71) Trans 26.8 16 0.0011 14.0 3.1 23 152-174 23-45 (68) 177 d1rkta1 a.4.1.9 (A:2-82) Hypot 26.7 16 0.0011 14.0 3.5 29 146-174 22-53 (81) 178 d2g7sa1 a.4.1.9 (A:3-76) Putat 25.7 16 0.0012 13.9 3.8 23 152-174 24-46 (74) 179 d2p5ka1 a.4.5.3 (A:2-64) Argin 24.9 17 0.0012 13.8 4.5 36 142-177 7-48 (63) 180 d1in0a2 d.58.49.1 (A:90-163) H 24.8 17 0.0012 13.8 7.1 38 261-300 28-65 (74) 181 d2b0la1 a.4.5.66 (A:167-257) G 24.6 17 0.0013 13.8 4.1 36 142-177 19-59 (91) 182 d2i10a1 a.4.1.9 (A:10-78) Puta 24.2 18 0.0013 13.7 3.9 23 152-174 20-42 (69) 183 d1v7ba1 a.4.1.9 (A:1-74) Trans 24.0 18 0.0013 13.7 3.5 31 144-174 13-46 (74) 184 d1utaa_ d.58.52.1 (A:) Cell di 24.0 18 0.0013 13.7 4.8 47 251-298 20-67 (77) 185 d1v2da_ c.67.1.1 (A:) Glutamin 23.9 18 0.0013 13.7 3.3 24 272-295 342-366 (368) 186 d1tw3a1 a.4.5.29 (A:14-98) Car 23.8 18 0.0013 13.7 3.1 29 149-177 31-59 (85) 187 d2np3a1 a.4.1.9 (A:35-99) Puta 23.7 12 0.00085 14.9 0.9 30 145-174 6-38 (65) 188 d2vkva1 a.4.1.9 (A:6-67) Tetra 22.8 19 0.0014 13.6 3.6 23 152-174 19-41 (62) 189 d2g7ga1 a.4.1.9 (A:9-73) Putat 22.1 19 0.0014 13.5 2.5 25 150-174 17-41 (65) 190 d1l8qa1 a.4.12.2 (A:290-399) C 21.7 20 0.0014 13.4 2.4 26 149-174 56-82 (110) 191 d2gb3a1 c.67.1.1 (A:4-392) AAT 21.5 20 0.0014 13.4 3.3 23 273-295 359-382 (389) 192 d1vp4a_ c.67.1.1 (A:) Putative 20.4 21 0.0015 13.2 3.5 23 273-295 384-408 (420) No 1 >d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]} Probab=100.00 E-value=1e-37 Score=259.42 Aligned_cols=190 Identities=18% Similarity=0.184 Sum_probs=161.9 Q ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 024038982357899987689889999999886310015504620--565445333575677777642100135433346 Q gi|254780805|r 39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRA--IDNGLYKIIAGERRFRAAKMASLSEVPVIIRNV 116 (300) Q Consensus 39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~--~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~ 116 (300) +..+++..|.++++|||..|+++.+++|+.||+++|+++|++|++ .+++.|+||+|||||+||+.+|+++|||+|.|+ T Consensus 3 v~~ie~~~i~~~~l~P~~~~~~~~l~~L~~sI~~~G~~~ppivv~~~~~~~~y~Ii~G~~R~~Aak~lG~~~IP~iv~d~ 82 (232) T d1vk1a_ 3 VKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDY 82 (232) T ss_dssp EECCCCEEEEGGGEECSBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECT T ss_pred CEECCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCEEEEEC T ss_conf 43355157642128898668999999999999980987898898405899877999528999999987998567899837 Q ss_pred CCHHHHH-----------HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H Q ss_conf 4112345-----------566654310221048999999985210111046799997433787786565654358999-9 Q gi|254780805|r 117 DNKSSLE-----------IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR-E 184 (300) Q Consensus 117 ~d~~~~~-----------~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~-~ 184 (300) +|++... .+++||+||++|+|+|+|.+|+++. +++..++.+|+++++|+|.+++++++..++ . T Consensus 83 ~de~~~~~~~~~~~~~~~~~~ien~~r~~l~~ieea~~~~~~~-----~~~~~~~~~gk~~~~i~~~lr~~~l~~~~l~~ 157 (232) T d1vk1a_ 83 FDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAE-----KGEIAFALIGEKSFAIPGGLEEQKKVSKVLDE 157 (232) T ss_dssp TSTTCEEECCEEEEESCHHHHHHHHHHTTCCCEECTTHHHHHH-----TTSSSEEEESSSEEEECCSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9778887654201301467899999987565766653035665-----78899998473088774057765508999999 Q ss_pred HHHHHHCCHHHHHHHHHCCH---HHHHHHHHHHCCCCHHHHHHHHHHHHCCC Q ss_conf 87642101677777640100---46899997422247789999997641022 Q gi|254780805|r 185 MIRKEEISLGHARTLVSTSD---PLSLAQVIVSKKMSVRDTEELVQEQDNKK 233 (300) Q Consensus 185 ~l~~~~is~ghar~Ll~~~~---~~~la~~Ii~~~LSVRe~E~lVk~~~~~~ 233 (300) +...|.++.+|++++....+ +.+++..++.+.||||++|++|++..... T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~lsvre~e~~vk~~~~~~ 209 (232) T d1vk1a_ 158 MDQAKEIELVYYGLKEDAKADMEKGEIDYVFIRKAPTKEEVMELVKRGEVFS 209 (232) T ss_dssp HHHTTSSEEEEESCHHHHHHHHHTTSCSEEEECCCCCHHHHHHHHHTTCCBS T ss_pred HHHCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC T ss_conf 9862213187552435455678765599999864799999999998356689 No 2 >d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Probab=99.94 E-value=3.3e-28 Score=198.27 Aligned_cols=93 Identities=45% Similarity=0.833 Sum_probs=89.2 Q ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 02403898235789998768988999999988631001550462056544533357567777764210013543334641 Q gi|254780805|r 39 QDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDN 118 (300) Q Consensus 39 ~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d 118 (300) +.+||+++|.|||+|||+.|+++++++|+.||+++|++||++|++.++ +|+|++|||||+||+.+|+++|||+|++++| T Consensus 1 I~~Ipi~~i~~~p~npR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~~-~y~ii~G~rR~~A~k~lg~~~ip~~v~~~~d 79 (93) T d1vz0a2 1 VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGD-GYELVAGERRYRAALMAGLQEVPAVVKDLTD 79 (93) T ss_dssp CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETT-EEEEEECHHHHHHHHHHTCSEEEEEECCCCH T ss_pred CEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC-CEEEEEEHHHHHHHHHCCCCEEEEEEEECCH T ss_conf 969778997359889987589999999999998377774269998299-3599962657877776699666699974998 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 12345566654310 Q gi|254780805|r 119 KSSLEIAIVENVQR 132 (300) Q Consensus 119 ~~~~~~~l~EN~~R 132 (300) .++..++++||+|| T Consensus 80 ~~a~~~~l~eN~~R 93 (93) T d1vz0a2 80 REALELALVENLQR 93 (93) T ss_dssp HHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999987079 No 3 >d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Probab=99.92 E-value=1.9e-25 Score=180.60 Aligned_cols=91 Identities=45% Similarity=0.681 Sum_probs=86.2 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCH--HHHHHH Q ss_conf 221048999999985210111046799997433787786565654358999987642101677777640100--468999 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSD--PLSLAQ 210 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~Ll~~~~--~~~la~ 210 (300) |||||+|+|.+|++|+ +||+|++++|+++|+|++||+|+|+|++||++|++++.+|+||+||||+|+++++ |..++. T Consensus 1 EDL~piEeA~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl~L~~~v~~~l~~g~Is~ghAr~L~~l~~~~q~~~~~ 79 (93) T d1vz0a1 1 EDLSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLK 79 (93) T ss_dssp TTCCHHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHH T ss_pred CCCCHHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9898999999999999-849999999999851469999999899989999999990982089999997799299999999 Q ss_pred HHHHCCCCHHHHHH Q ss_conf 97422247789999 Q gi|254780805|r 211 VIVSKKMSVRDTEE 224 (300) Q Consensus 211 ~Ii~~~LSVRe~E~ 224 (300) +|++++||||++|. T Consensus 80 ~ii~~~lSVR~~Ea 93 (93) T d1vz0a1 80 EILEKGLSVRQAEA 93 (93) T ss_dssp HHHHTCCCHHHHCC T ss_pred HHHHCCCCHHHHCC T ss_conf 99992999988656 No 4 >d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]} Probab=99.79 E-value=4.3e-20 Score=146.15 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=75.3 Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE-EEC----CCCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 66024038982357899987689889999999886310015504-620----5654453335756777776421001354 Q gi|254780805|r 37 ESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLI-VRA----IDNGLYKIIAGERRFRAAKMASLSEVPV 111 (300) Q Consensus 37 ~~~~~i~i~~i~~~p~~pR~~~~~~~l~eLa~SI~~~G~lqPi~-Vr~----~~~g~y~ii~G~rR~rAa~~~g~~~ip~ 111 (300) ..+.+||++.|. +|+ ||. ||++.+++|++||+++|+++|++ |++ .++++|++++|||||+|++.+|+++||| T Consensus 12 ~~i~~IPl~~I~-~p~-~r~-~d~~~i~eL~~SI~~~G~~~ppivV~~~~~~~~~~~Y~li~G~rR~~A~k~LG~~~Ipa 88 (110) T d1xw3a1 12 AAVHNVPLSVLI-RPL-PSV-LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPA 88 (110) T ss_dssp EEEEEEEGGGEE-CCS-CCC-CCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEE T ss_pred CEEEEECHHHCC-CCC-CCC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHCCCCEEEE T ss_conf 637894689968-999-998-89999999999998663226762698602468898489986589999999859986618 Q ss_pred CCCCCCCHHH--HHHHHHHHHH Q ss_conf 3334641123--4556665431 Q gi|254780805|r 112 IIRNVDNKSS--LEIAIVENVQ 131 (300) Q Consensus 112 iv~~~~d~~~--~~~~l~EN~~ 131 (300) +|.+.++.++ +..+.+||+| T Consensus 89 ~V~~~~~~~l~lyl~~~~~~l~ 110 (110) T d1xw3a1 89 KLVQSTLSDLRVYLGASTPDLQ 110 (110) T ss_dssp EEEEECHHHHHHHHGGGCCCCC T ss_pred EEEECCHHHHHHHHHCCCCCCC T ss_conf 9998999999998743582249 No 5 >d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=99.68 E-value=9.2e-17 Score=124.75 Aligned_cols=75 Identities=23% Similarity=0.341 Sum_probs=69.8 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH Q ss_conf 5666543102210489999999852101110467999974337877865656543589999876421016777776 Q gi|254780805|r 124 IAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTL 199 (300) Q Consensus 124 ~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~ghar~L 199 (300) .+++||+||+||+|+|+|.+|++|++. |+|+++||+++|+|++||+++|+|++||+++++++..|.|+..++... T Consensus 3 ~ql~EN~qR~~L~p~e~A~a~~~l~~~-g~s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~~g~i~~~~a~~~ 77 (114) T d1r71a_ 3 DQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTVVNE 77 (114) T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHHTTSCCCHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH-CCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 899998840689999999999999880-998999999977729999999999679999999999499878999999 No 6 >d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Probab=95.08 E-value=0.01 Score=34.45 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -.+.+..+++++...||||.++|+++|.++++|++..+ T Consensus 9 k~~l~~~i~~~r~~~gltq~~lA~~~gis~~~is~ie~ 46 (89) T d2o38a1 9 KLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRN 46 (89) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999599999999999733708999984 No 7 >d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]} Probab=94.82 E-value=0.021 Score=32.47 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=46.0 Q ss_pred CCCHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 64112-345566654310221048999999985210111046799997433787786565 Q gi|254780805|r 116 VDNKS-SLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 116 ~~d~~-~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.++ +..-+-+|.+-|.| |..-+.-++..+..++++|.++|+..|.|.|+||..|. T Consensus 6 ~~~eE~~~~~~eVE~llr~d--~~~v~~~IK~Fl~~h~I~Q~~Va~~TGlsQS~iSq~L~ 63 (94) T d1ic8a2 6 LSPEEAAHQKAVVETLLQED--PWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN 63 (94) T ss_dssp CCHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 58166767777999999659--99999999999998688599999998015999999982 No 8 >d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Probab=94.44 E-value=0.015 Score=33.48 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=28.5 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.++++.|+||.++|+.+|.|+++|++++. T Consensus 5 ~lke~r~~~glsq~~LA~~lGvs~~~is~ie~ 36 (87) T d2icta1 5 IIQESLDELNVSLREFARAMEIAPSTASRLLT 36 (87) T ss_dssp HHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHH T ss_conf 99999998699999999997246999999998 No 9 >d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Probab=94.25 E-value=0.019 Score=32.75 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=31.2 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -|++ |+....++|++. |.+..+||+.+|.|++||.+++. T Consensus 5 ~lt~-~q~~~a~~l~~~-G~s~~~iA~~~gVSr~TiYry~p 43 (47) T d1ijwc_ 5 AINK-HEQEQISRLLEK-GHPRQQLAIIFGIGVSTLYRYFP 43 (47) T ss_dssp SSCH-HHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHSC T ss_pred CCCH-HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 5999-999999999988-99799999997969999985577 No 10 >d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} Probab=94.07 E-value=0.024 Score=32.09 Aligned_cols=36 Identities=17% Similarity=0.371 Sum_probs=31.4 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +-+..++++..+.|+||+++|+.+|.++++|++..+ T Consensus 6 ~l~~~i~~~r~~~gltq~elA~~~gv~~~~is~ie~ 41 (69) T d2a6ca1 6 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMR 41 (69) T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHC T ss_conf 999999999999699999999998747847999976 No 11 >d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Probab=93.91 E-value=0.022 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=27.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99998521011104679999743378778656 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .-|+.+....|+||.++|+.+|.|+.+|+++= T Consensus 4 e~~k~~R~~~gltQ~elA~~LGvs~~ti~~yE 35 (67) T d2auwa1 4 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYR 35 (67) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 99999999959999999999599899999998 No 12 >d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Probab=93.78 E-value=0.031 Score=31.41 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=32.7 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -++-+..++++....|+||+++|+.+|.|+++|+++-+ T Consensus 7 ~~~~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~ 44 (69) T d1y7ya1 7 LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVER 44 (69) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999999999998399999998682998989999987 No 13 >d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Probab=93.13 E-value=0.035 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=29.1 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011104679999743378778656565435 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) .|+....+.|+||.++|+++|.|+++|+++-+=-..| T Consensus 16 ~i~~~R~~~gltq~~lA~~lgis~~~is~~E~g~~~~ 52 (87) T d1lmb3_ 16 IYEKKKNELGLSQESVADKMGMGQSGVGALFNGINAL 52 (87) T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCC T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCC T ss_conf 9999999939999999988672288899998114787 No 14 >d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Probab=93.12 E-value=0.035 Score=31.06 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=32.2 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++-+..++++....|+||.++|+.+|.|+++|+++-+ T Consensus 4 ~~~iG~~I~~~R~~~gltq~~lA~~~gis~~~is~~E~ 41 (78) T d1x57a1 4 TLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYES 41 (78) T ss_dssp CCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHC T ss_conf 48999999999998599726788718878999999980 No 15 >d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Probab=93.08 E-value=0.028 Score=31.70 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=26.3 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.+....|+||.++|+.+|.|+++|+++=. T Consensus 4 ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~ 34 (62) T d2ppxa1 4 IKIIRRALKLTQEEFSARYHIPLGTLRDWEQ 34 (62) T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 8999999699999999996989999998877 No 16 >d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Probab=92.94 E-value=0.04 Score=30.68 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+..++++....|+||+++|+.+|.|+++|+++.. T Consensus 11 ~g~~ik~~R~~~gltq~~lA~~~gis~~~i~~~e~ 45 (77) T d2b5aa1 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVER 45 (77) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999999998099999999897979999999986 No 17 >d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=92.89 E-value=0.041 Score=30.62 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=28.8 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..++++..+.|+||+++|+++|.|+++|+++-+ T Consensus 4 ~~ik~~R~~~gltq~~la~~~gis~~~i~~~E~ 36 (68) T d1b0na2 4 QRIKQYRKEKGYSLSELAEKAGVAKSYLSSIER 36 (68) T ss_dssp HHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 999999998299999999897979999999985 No 18 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Probab=92.55 E-value=0.047 Score=30.29 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=29.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++++....|+||.++|+.+|.|+++++++.+ T Consensus 5 g~rik~~R~~~g~tq~~lA~~~gvs~~~i~~~e~ 38 (66) T d2r1jl1 5 GERIRARRKKLKIRQAALGKMVGVSNVAISQWER 38 (66) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999998599999999997989999999986 No 19 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Probab=92.49 E-value=0.051 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++.+..+.|+||+++|+.+|.|+++|+++.+ T Consensus 5 ~~rlr~~R~~~gltq~~lA~~~gvs~~ti~~~E~ 38 (65) T d2croa_ 5 SERLKKRRIALKMTQTELATKAGVKQQSIQLIEA 38 (65) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999998499999999997867949998787 No 20 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=92.01 E-value=0.06 Score=29.57 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985210111046799997433787786565 Q gi|254780805|r 140 EALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 140 ~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+.-++.+....|+||+++|+.+|.|+++|+++.+ T Consensus 9 ig~~lr~~R~~~g~sq~~lA~~~gis~~~i~~~E~ 43 (79) T d1y9qa1 9 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIER 43 (79) T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHT T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 99999999998299999999987711648999986 No 21 >d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Probab=91.99 E-value=0.064 Score=29.40 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=29.4 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.-++++..+.|+||+++|+.+|.|+++|+++.+ T Consensus 3 g~rik~~R~~~g~sq~elA~~~gvs~~~is~~E~ 36 (63) T d1r69a_ 3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (63) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 9999999998499699999983739999999878 No 22 >d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Probab=91.94 E-value=0.052 Score=29.99 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=26.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++++..+.|+||.++|+++|.|+++++++.+ T Consensus 6 i~~lR~~~g~tq~elA~~~gis~~~is~~e~ 36 (66) T d1utxa_ 6 LKLIREKKKISQSELAALLEVSRQTINGIEK 36 (66) T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHCCCCHHHHHHHCCCCHHHHHHHHC T ss_conf 9999998599999998863557989999986 No 23 >d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]} Probab=91.72 E-value=0.1 Score=28.14 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=34.9 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|..|+.-|.-..++++-+--..+|.+||+.+|.++++|++.|+ T Consensus 4 kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlK 47 (66) T d1hlva1 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILK 47 (66) T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH T ss_conf 32337799999999999808721099999995997647999998 No 24 >d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=91.19 E-value=0.32 Score=24.95 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=29.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-+....+.+.. .|+|.+++|+.+|.|.++|.+++. T Consensus 21 ~L~~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~~~ 59 (71) T d1rp3a2 21 KLPEREKLVIQLIFY--EELPAKEVAKILETSVSRVSQLKA 59 (71) T ss_dssp TSCHHHHHHHHHHHT--SCCCHHHHHHHTTSCHHHHHHHHH T ss_pred CCCHHHHHHHHHHHH--HHCCHHHHHHHHCCCHHHHHHHHH T ss_conf 799999999999986--848999999997989999999999 No 25 >d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540 {Agrobacterium tumefaciens [TaxId: 358]} Probab=90.72 E-value=0.094 Score=28.31 Aligned_cols=76 Identities=14% Similarity=0.029 Sum_probs=44.7 Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCHH----------HHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6602403898235789998768988----------999999988631001550462056544533357567777764210 Q gi|254780805|r 37 ESQDCISIHSIVPNPHNPRNYFESE----------GLEDLCQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASL 106 (300) Q Consensus 37 ~~~~~i~i~~i~~~p~~pR~~~~~~----------~l~eLa~SI~~~G~lqPi~Vr~~~~g~y~ii~G~rR~rAa~~~g~ 106 (300) ..+.+|+|+.+.|- |.---+++- +=++..+-++.+ |+-|.--++|.+.+++||+++||...+|. T Consensus 4 ~~l~~V~i~~L~PT--Q~~vG~~eV~~k~~~~~~~~~~~~~~yl~~k----~vPvV~gp~g~lylvD~HH~~ral~e~g~ 77 (201) T d2hwja1 4 PRLSRIAIDKLRPT--QIAVGFREVELKRKEWRETRKKDGDDFLGNH----IVPVVAGPKDRAYLIDHHHLVLALSKEGV 77 (201) T ss_dssp CBEEEEEGGGCBCS--BSEECHHHHHHHHHHHHTCC-----CCTTCB----EEEEEECSTTCEEECSCHHHHHHHHHTTC T ss_pred CCEEEEEHHHCCCC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC----CCCEEECCCCCEEEECCHHHHHHHHHCCC T ss_conf 72588787861783--1544499999999999852999999998559----96779889998678766078889987588 Q ss_pred CCCCCCC-CCCCC Q ss_conf 0135433-34641 Q gi|254780805|r 107 SEVPVII-RNVDN 118 (300) Q Consensus 107 ~~ip~iv-~~~~d 118 (300) +++++.| .|+++ T Consensus 78 ~~v~v~v~~dls~ 90 (201) T d2hwja1 78 EHVLTSEVAKFSH 90 (201) T ss_dssp CEEEEEEEEECTT T ss_pred CEEEEEEEEECCC T ss_conf 6267999752565 No 26 >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=89.30 E-value=0.31 Score=24.96 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=38.6 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 66654310221048999999985210111046799997433787786565 Q gi|254780805|r 125 AIVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 125 ~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+..-+|++.| +..|..|......|+.+||+.+|.++++|++.|. T Consensus 8 ~l~~~L~~lGlt~~e-~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~ 56 (109) T d1sfxa_ 8 ELVKALEKLSFKPSD-VRIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109) T ss_dssp HHHHHHHHTCCCHHH-HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 999999985999999-9999998823899899999985798355999999 No 27 >d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus pyogenes [TaxId: 1314]} Probab=86.65 E-value=0.39 Score=24.33 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=27.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+.....-+.. .|+|..+||+.+|.|+++|...+. T Consensus 17 Lp~~qR~v~~L~y~--~~ls~~EIA~~lgiS~~aV~~~l~ 54 (106) T d1s7oa_ 17 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIK 54 (106) T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999898999--199999999998969999999999 No 28 >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=85.00 E-value=0.5 Score=23.65 Aligned_cols=26 Identities=46% Similarity=0.707 Sum_probs=22.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ..+||++||..+|.||.+|++.|+-+ T Consensus 28 l~lt~~~lA~~~G~sRetvsr~L~~l 53 (69) T d1i5za1 28 IKITRQEIGQIVGCSRETVGRILKML 53 (69) T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 17899999989799799999999999 No 29 >d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Probab=83.72 E-value=0.54 Score=23.44 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=28.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 48999999985210111046799997433787786565 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|.. .+.+.++.+++...+.|+.+|.||+++.+.|+ T Consensus 19 ~~Er~-~I~~aL~~~~gn~~~aA~~LGIsR~TL~rkmk 55 (60) T d1umqa_ 19 RVRWE-HIQRIYEMCDRNVSETARRLNMHRRTLQRILA 55 (60) T ss_dssp HHHHH-HHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999-99999999668599999998988999999999 No 30 >d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=83.16 E-value=0.64 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++|+.++|+++|.|+++|++.-+ T Consensus 25 ~~t~~eLA~~~Gvs~~~ls~iE~ 47 (82) T d2ofya1 25 DMSMVTVAFDAGISVETLRKIET 47 (82) T ss_dssp TSCHHHHHHHHTCCHHHHHHHHT T ss_pred CCCHHHHHHHHCCCHHHHHHHHC T ss_conf 07999999897179999999982 No 31 >d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} Probab=82.78 E-value=0.71 Score=22.70 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=29.4 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-|.-.. +++.+ |+|..+||+.+|.|..+|.++++ T Consensus 6 ~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~ 43 (67) T d1a04a1 6 QLTPRERDIL--KLIAQ-GLPNKMIARRLDITESTVKVHVK 43 (67) T ss_dssp GSCHHHHHHH--HHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 2799999999--99996-79989999997888889999999 No 32 >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=82.58 E-value=0.56 Score=23.35 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=23.8 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |.+.--+|.++||+.+|.|+++|.+.+.-|+ T Consensus 14 L~~~~~~s~~eLa~~l~vS~~ti~r~i~~L~ 44 (63) T d1biaa1 14 LANGEFHSGEQLGETLGMSRAAINKHIQTLR 44 (63) T ss_dssp HTTSSCBCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9978958799999998939999999999999 No 33 >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Probab=82.32 E-value=0.64 Score=22.95 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=27.3 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+.....-+.. .|+|.++||+.+|.|.++|.+++. T Consensus 19 Lp~~~r~v~~l~~~--~~~s~~eIA~~lgis~~tv~~~l~ 56 (68) T d1or7a1 19 LPEDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIF 56 (68) T ss_dssp SCHHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHH T ss_pred CCHHHHHHHHHHHH--HCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999999999--098999999998949999999999 No 34 >d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} Probab=81.85 E-value=0.81 Score=22.33 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=29.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-|+|-|.... +++.+ |+|..+||..+|.|.++|.++++ T Consensus 3 p~LT~rE~~vl--~l~~~-G~s~~eIA~~L~is~~TV~~~~~ 41 (67) T d1fsea_ 3 PLLTKREREVF--ELLVQ-DKTTKEIASELFISEKTVRNHIS 41 (67) T ss_dssp CCCCHHHHHHH--HHHTT-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 98889999999--99983-69899999998888889999999 No 35 >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Probab=81.78 E-value=1.5 Score=20.67 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=31.0 Q ss_pred CCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 22104899999998521011-1046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYG-YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~-~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++.+-. .+..|....| +|+.+||+.+|.++++|++.+. T Consensus 17 ~gLs~~~~~-iL~~L~~~~~~~t~~eLa~~~~i~~~tvs~~l~ 58 (109) T d2d1ha1 17 YKITDTDVA-VLLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109) T ss_dssp HTCCHHHHH-HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 695999999-999999769898899999998856769999999 No 36 >d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=81.53 E-value=0.65 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=25.4 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985210111046799997433787786565 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+++|.++ |+...+||+.+|.+|++|.+.|. T Consensus 10 ~V~~L~~~-G~gat~IAk~lgI~R~SVYR~L~ 40 (43) T d1gdta1 10 AVLNMWQQ-GLGASHISKTMNIARSTVYKVIN 40 (43) T ss_dssp HHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999994-89899999997987999999986 No 37 >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} Probab=81.23 E-value=0.93 Score=21.94 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=26.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..++-+......|..+||+.+|.|+++|++.+. T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~ 42 (71) T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESELAPASITKITR 42 (71) T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999985994899999998878878999999 No 38 >d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=81.18 E-value=0.85 Score=22.17 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=37.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) ++|+..|.|..++..+..++++|.-.|+. +|+|+.+++..|+ T Consensus 7 e~ldT~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~ 49 (87) T d1x2la1 7 EQLDTAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILA 49 (87) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHH T ss_conf 8779999999999999994987999999998308478999984 No 39 >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=81.17 E-value=1.5 Score=20.54 Aligned_cols=45 Identities=24% Similarity=0.172 Sum_probs=31.3 Q ss_pred HHHCCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 43102210489999999852-10111046799997433787786565 Q gi|254780805|r 129 NVQRKDLNPLEEALGYEQLI-SEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 129 N~~R~dl~p~e~A~~~~~l~-~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+.-.|++. .+..|--|. ....+|..+||+.+|.|+++|++.++ T Consensus 18 ~~~~~Gl~~~-~~~i~~~L~~~~~plt~~ela~~l~vsk~~vs~~l~ 63 (151) T d1ku9a_ 18 LAKIHGLNKS-VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLK 63 (151) T ss_dssp HHHHTTCCHH-HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 9998399999-999999998489892899999986777024999999 No 40 >d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Probab=80.55 E-value=0.79 Score=22.38 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=28.0 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101110467999974337877865656543 Q gi|254780805|r 143 GYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 143 ~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) .+...++.+++.+.+.|+.+|.||+++.+.|+=..+ T Consensus 53 ~i~~aL~~~~gn~~~aA~~LGisR~tL~~klk~~gi 88 (89) T d1etxa_ 53 LLDMVMQYTRGNATRAALMMGINRGTLRKKLKKYGM 88 (89) T ss_dssp HHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHTTC T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 999999992996999999989789999999998683 No 41 >d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Probab=80.29 E-value=0.83 Score=22.26 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=29.9 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 489999999852101110467999974337877865656543 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKL 178 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L 178 (300) .+|.. .+...++.+++.+.+.|+.+|.+|+|+.+.|+=..+ T Consensus 50 ~~E~~-lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk~~gi 90 (91) T d1ntca_ 50 ELERT-LLTTALRHTQGHKQEAARLLGWGAATLTAKLKELGM 90 (91) T ss_dssp HHHHH-HHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHHHH T ss_pred HHHHH-HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC T ss_conf 99999-999999995995999999979889999999998784 No 42 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=79.95 E-value=0.95 Score=21.88 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=26.1 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+|-+.....-+. ..|+|..+||+.+|.|+++|...+. T Consensus 19 Lpe~QR~vl~L~~--~e~ls~~EIA~~lgiS~~aV~~~l~ 56 (106) T d1xsva_ 19 LTNKQRNYLELFY--LEDYSLSEIADTFNVSRQAVYDNIR 56 (106) T ss_dssp SCHHHHHHHHHHH--TSCCCHHHHHHHTTCCHHHHHHHHH T ss_pred CCHHHHHHHHHHH--HHCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999999999--9087599999998959999999999 No 43 >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=79.77 E-value=1.2 Score=21.29 Aligned_cols=41 Identities=27% Similarity=0.317 Sum_probs=28.3 Q ss_pred HHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 99985210111--04679999743-3787786565654358999987642101 Q gi|254780805|r 143 GYEQLISEYGY--TQNDIGSIVGK-SRSHVANILRILKLPSSVREMIRKEEIS 192 (300) Q Consensus 143 ~~~~l~~~~~~--t~~~lA~~~G~-s~s~V~~~LrLl~L~~~i~~~l~~~~is 192 (300) .+.....++|+ |..|||+.+|. |.++|.++|. .+...|-|. T Consensus 13 ~I~~~~~~~G~~Ps~rei~~~~g~~S~stv~~~l~---------~Le~kG~I~ 56 (71) T d1jhfa1 13 LIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK---------ALARKGVIE 56 (71) T ss_dssp HHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH---------HHHHTTSEE T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH---------HHHHCCCEE T ss_conf 99999998288988999997729999999999999---------999975930 No 44 >d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Probab=79.49 E-value=1 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=30.3 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|-|.-... ++.. |++..+||..+|.|..+|.++++ T Consensus 11 ~~LT~rE~~vl~--~l~~-G~s~~eIA~~l~iS~~TV~~~~~ 49 (70) T d1yioa1 11 SSLTGREQQVLQ--LTIR-GLMNKQIAGELGIAEVTVKVHRH 49 (70) T ss_dssp HTSCHHHHHHHH--HHTT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCCHHHHHHHH--HHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 408999999999--9982-89999999897979999999999 No 45 >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} Probab=79.47 E-value=0.78 Score=22.44 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=26.7 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..|.....++..+||+.+|.|+++||..|+.|. T Consensus 37 l~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~ 70 (108) T d1u2wa1 37 TYALCQDEELCVCDIANILGVTIANASHHLRTLY 70 (108) T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 9999868991499999888557257999999999 No 46 >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} Probab=77.92 E-value=1.2 Score=21.27 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=26.1 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565654 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..|. ....+..+||+.+|.|+++|+..|+.|. T Consensus 29 l~~L~-~~~~~v~ela~~l~is~stvS~HL~~L~ 61 (98) T d1r1ta_ 29 LSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLR 61 (98) T ss_dssp HHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99998-1996799999998929889999999999 No 47 >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=77.68 E-value=1.5 Score=20.69 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=30.3 Q ss_pred CHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 048999999985210--11104679999743378778656565 Q gi|254780805|r 136 NPLEEALGYEQLISE--YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 136 ~p~e~A~~~~~l~~~--~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +.+++|..+-..+.+ .+++..+||+.+|.+++++.++|.-| T Consensus 2 ~sl~r~l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL 44 (75) T d1mkma1 2 NTLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVL 44 (75) T ss_dssp TTHHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 7899999999999857999899999999791999999999999 No 48 >d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]} Probab=77.45 E-value=1.2 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.1 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 21011104679999743378778656-5654358999987 Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANIL-RILKLPSSVREMI 186 (300) Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~L-rLl~L~~~i~~~l 186 (300) ..+.|+|-++||+.+|.|..||+..+ .-..||++--+.| T Consensus 22 K~~kgltw~~IA~~iG~s~vwvtaa~lGQ~~l~~~~A~~l 61 (86) T d1dwka1 22 KAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLV 61 (86) T ss_dssp HHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHH T ss_conf 9983998999998959889999999845788999999999 No 49 >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Probab=77.28 E-value=0.69 Score=22.75 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=21.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +.+|+++||..+|.+|.+|++.|+-+ T Consensus 29 ~~~t~~eiA~~lG~sretvsr~l~~l 54 (80) T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTALNSL 54 (80) T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 37899999999798899999999999 No 50 >d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Probab=76.73 E-value=1.4 Score=20.88 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=28.5 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|+|-|.... +++.+ |+|-.+||+.+|.|..+|.++++ T Consensus 4 ~Lt~rE~~vl--~l~~~-G~s~~eIA~~l~iS~~TV~~~~~ 41 (65) T d1l3la1 4 WLDPKEATYL--RWIAV-GKTMEEIADVEGVKYNSVRVKLR 41 (65) T ss_dssp CCCHHHHHHH--HHHTT-TCCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHH--HHHHH-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 0489999999--99993-69888999997888999999999 No 51 >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Probab=76.70 E-value=1.2 Score=21.20 Aligned_cols=35 Identities=9% Similarity=0.242 Sum_probs=26.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 11104679999743378778656565435899998764210167 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) +.+||++||..+|.|+.+|++.|+ ++-.+|-|+.. T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~---------~l~~~glI~~~ 62 (81) T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLS---------TFVSERMLALD 62 (81) T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHH---------HHHHTTSEEEE T ss_pred ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC T ss_conf 068999999997998999999999---------99989978963 No 52 >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Probab=76.62 E-value=1.8 Score=20.07 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=34.1 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 2104899999998521011104679999743378778656565435899998764210 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) +|++. ++..+..+....+.|+.+||+.+|.++++|++.+ ..++..|-| T Consensus 27 glt~~-q~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l---------~~L~~~gli 74 (139) T d2a61a1 27 GITPA-QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV---------KRLEADGYL 74 (139) T ss_dssp TCCHH-HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH---------HHHHHTTSE T ss_pred CCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHH---------HHHHHCCEE T ss_conf 97999-9999999997699899999998398814426999---------999845725 No 53 >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Probab=76.50 E-value=1.3 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=25.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 11104679999743378778656565435899998764210167 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) +.+||++||..+|.|+.+|++.|. ++-.+|-|+.+ T Consensus 29 ~~lt~~elA~~~g~sretvsr~l~---------~l~~~glI~~~ 63 (80) T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRVLA---------SLKRENILDKK 63 (80) T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH---------HHHHTTSEEC- T ss_pred ECCCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEEC T ss_conf 379999999998877889999999---------99989969963 No 54 >d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=76.18 E-value=1.5 Score=20.66 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=27.3 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 489999999852101110467999974337877865656 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) |+|.=.-+-.+.++ |.+..++|++|+.|.++|++.++. T Consensus 16 s~DLR~Riv~~~~~-G~s~r~aA~rf~VS~s~v~k~l~r 53 (63) T d1k78a1 16 PDVVRQRIVELAHQ-GVRPCDISRQLRVSHGCVSKILGR 53 (63) T ss_dssp CHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999995-998999999959779999999999 No 55 >d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Probab=76.14 E-value=1.2 Score=21.24 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=25.7 Q ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 11046799997433-78778656565435899998764210167 Q gi|254780805|r 152 GYTQNDIGSIVGKS-RSHVANILRILKLPSSVREMIRKEEISLG 194 (300) Q Consensus 152 ~~t~~~lA~~~G~s-~s~V~~~LrLl~L~~~i~~~l~~~~is~g 194 (300) .+||++||..+|.| |.+|++.|+ ++-.+|-|+.. T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~---------~L~~~GlI~~~ 65 (100) T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIIS---------KLKQEKVIVYK 65 (100) T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHH---------HHHHTTSEEEE T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH---------HHHHCCCEEEC T ss_conf 669999998838744889999999---------99879788975 No 56 >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=75.92 E-value=1.8 Score=20.02 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565654 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+|..++|+.+|.|+.||.+.+..|+ T Consensus 22 ~vs~~~La~~l~VS~~TI~rdi~~L~ 47 (65) T d1j5ya1 22 PVSGAQLAEELSVSRQVIVQDIAYLR 47 (65) T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 78599999997989999999999999 No 57 >d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=74.83 E-value=1.7 Score=20.23 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=37.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) ++|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+ T Consensus 15 ~~ldT~~I~~~v~~eL~~~~IsQ~~Fa~~VL~rSQGtlSdLL~ 57 (101) T d1wh6a_ 15 REVDTLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLS 57 (101) T ss_dssp SCCCHHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH T ss_conf 2258999999999999994976999999998108178999984 No 58 >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} Probab=74.82 E-value=1.6 Score=20.48 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.4 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+..++..++++.+|.|+++||..|+.|. T Consensus 28 ~~~~~~v~el~~~l~~s~~~vS~HL~~L~ 56 (94) T d1r1ua_ 28 SVSEASVGHISHQLNLSQSNVSHQLKLLK 56 (94) T ss_dssp HHCCBCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 72995699999998878778999999999 No 59 >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Probab=74.55 E-value=1.7 Score=20.32 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=31.2 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..++++.+ ...+..+....++|+.+||+.+|.|+++|++.+. T Consensus 27 ~~~lt~~q-~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~ 68 (140) T d2etha1 27 ISDMKTTE-LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVD 68 (140) T ss_dssp HHHSBHHH-HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHH T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 35999999-9999999986995999999998969879999999 No 60 >d1s7ea2 a.35.1.7 (A:6-85) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Probab=74.33 E-value=0.99 Score=21.77 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=35.7 Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 2104899999998521011104679999-7433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) +|+..+.|..++..+..++++|.--|+. +|+|+.+++..|+ T Consensus 1 eldT~~I~~~i~~eL~~~~IsQ~~Fa~~vL~rsQGtlSdLL~ 42 (80) T d1s7ea2 1 EINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLR 42 (80) T ss_dssp CCCSHHHHHHHHHHHTSSCCCHHHHHHHTSSSCSSHHHHHTT T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHC T ss_conf 988999999999999995987999999997438078999883 No 61 >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=73.27 E-value=1.1 Score=21.56 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=26.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 1110467999974337877865656543589999876421016777 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHA 196 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~is~gha 196 (300) ..+|++++|..+|.++.+|++.|. .+-.+|-|+.++. T Consensus 26 i~lt~~elA~~lg~sr~tvsr~l~---------~l~~~g~I~~~~~ 62 (73) T d1zyba1 26 FKVKMDDLARCLDDTRLNISKTLN---------ELQDNGLIELHRK 62 (73) T ss_dssp EECCHHHHHHHHTSCHHHHHHHHH---------HHHHTTSCEEETT T ss_pred EECCHHHHHHHHCCCHHHHHHHHH---------HHHHCCCEEECCC T ss_conf 506999999897988999999999---------9998898996299 No 62 >d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=73.27 E-value=1.9 Score=19.90 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=27.4 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999985210111046799997433787786565654 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) |.=.-+-.+.+ .|++..++|++||.|+++|++.++... T Consensus 20 dlR~rIv~~~~-~G~s~r~iA~~~~VS~~tV~k~l~r~~ 57 (123) T d1pdnc_ 20 NIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQ 57 (123) T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999998-048999999998969999999999987 No 63 >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Probab=73.01 E-value=1.3 Score=21.01 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=23.0 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 85210111046799997433787786565 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .|......+..++|+.+|.|+++|.++++ T Consensus 13 ~L~~n~r~s~~~iA~~lgis~~tv~~Ri~ 41 (63) T d2cfxa1 13 ELKKDSRLSMRELGRKIKLSPPSVTERVR 41 (63) T ss_dssp HHHHCSCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99983999999999998968789999999 No 64 >d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Probab=72.66 E-value=2.4 Score=19.33 Aligned_cols=49 Identities=24% Similarity=0.371 Sum_probs=42.2 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+ T Consensus 20 RPv~~~dl~~kv~~afGq~ldl~y~n~--EL~IPl~~Q~DLDkAvellDrs 68 (82) T d2nptb1 20 RPVKLEDLRSKAKIAFGQSMDLHYTNN--ELVIPLTTQDDLDKAVELLDRS 68 (82) T ss_dssp SSCCHHHHHHHHHHHHTSCEEEEEEET--TEEEECCCHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC T ss_conf 884389999999998598466888567--6888625677789999987169 No 65 >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} Probab=72.26 E-value=1.9 Score=20.00 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=26.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985210111046799997433787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++-+......|..+||+.+|.|+++|++.+. T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~ 41 (70) T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH 41 (70) T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999994992899999998949999999999 No 66 >d2csba5 a.267.1.1 (A:3-293) Topoisomerase V, catalytic domain {Methanopyrus kandleri [TaxId: 2320]} Probab=71.36 E-value=2.8 Score=18.83 Aligned_cols=95 Identities=35% Similarity=0.449 Sum_probs=46.1 Q ss_pred CCCCCEEECC---------C----CCCCCCCCCHHHHHH-HHHHHC--CCCCCCC-CCC--CCHHHHHHHHHHHHHCCCC Q ss_conf 0155046205---------6----544533357567777-764210--0135433-346--4112345566654310221 Q gi|254780805|r 75 IIQPLIVRAI---------D----NGLYKIIAGERRFRA-AKMASL--SEVPVII-RNV--DNKSSLEIAIVENVQRKDL 135 (300) Q Consensus 75 ~lqPi~Vr~~---------~----~g~y~ii~G~rR~rA-a~~~g~--~~ip~iv-~~~--~d~~~~~~~l~EN~~R~dl 135 (300) -.|.++||-. . +.+|-|+. .|-||| |+.+.+ +.+|++- +.+ ++-+-..-.+.-...|-|| T Consensus 74 ryqnvivrgvnfdervqrlstggsparyaivy-rrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdl 152 (291) T d2csba5 74 RYQNVIVRGVNFDERVQRLSTGGSPARYAIVY-RRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDL 152 (291) T ss_dssp SEEEEEETTEEHHHHHHTSTTCCCHHHHHHTS-TTTHHHHHHHTTCCGGGCCCCCCCCCTTCSSCHHHHHHHHHTTCTTT T ss_pred HHHHEEEECCCHHHHHHHHCCCCCCCEEEEEE-HHHHHHHHHHCCCCCCCCCCEEEEEHHCCCCCHHHHHHHHHHCCCCE T ss_conf 35410233256799899840589864067552-35489999870888123852032201148873899999999655220 Q ss_pred CH-------HHHHHHHHHHHH------------------HCCCC-HHHHHHHHHHHHHHHH Q ss_conf 04-------899999998521------------------01110-4679999743378778 Q gi|254780805|r 136 NP-------LEEALGYEQLIS------------------EYGYT-QNDIGSIVGKSRSHVA 170 (300) Q Consensus 136 ~p-------~e~A~~~~~l~~------------------~~~~t-~~~lA~~~G~s~s~V~ 170 (300) .| -|.|--|.+|++ +.-|| ++++|.++|.|-|.|. T Consensus 153 mpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvseve 213 (291) T d2csba5 153 MPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVE 213 (291) T ss_dssp SCSSGGGCCGGGTTTTHHHHHHTTCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHH T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHC T ss_conf 3410154895550179999997079976478999999970899972899998487532313 No 67 >d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=71.34 E-value=1.2 Score=21.14 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11104679999743378778656565 Q gi|254780805|r 151 YGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 151 ~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ..+||+++|..+|.++.+|++.|.-+ T Consensus 28 i~lt~~elA~~lg~sr~tv~r~L~~l 53 (82) T d2zcwa1 28 LKATHDELAAAVGSVRETVTKVIGEL 53 (82) T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH T ss_pred ECCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 05899999999898899999999999 No 68 >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} Probab=71.20 E-value=2.2 Score=19.52 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=19.0 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21011104679999743378778656565 Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +.+..+|..+||+.+|.|+++|+..|+.| T Consensus 28 L~~~~~s~~ela~~lg~s~~~v~~hl~~L 56 (190) T d1ulya_ 28 LRNKEMTISQLSEILGKTPQTIYHHIEKL 56 (190) T ss_dssp HTTCCBCHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 98199879999999891999999999999 No 69 >d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]} Probab=71.08 E-value=2.4 Score=19.30 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=42.0 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCC Q ss_conf 897899999999997398799971798228999858989999999983756 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEN 296 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~ 296 (300) .+..+.+++.+....||-...+...++ .+.|...+.+||++-++.|..+ T Consensus 20 RPv~~~dl~~kv~~afGq~ldl~y~n~--El~IPl~~Q~DLDkAvellDrs 68 (80) T d2c60a1 20 RPVKYEDVEHKVTTVFGQPLDLHYMNN--ELSILLKNQDDLDKAIDILDRS 68 (80) T ss_dssp SSCCHHHHHHHHHHHHSSCCEEEEECS--SCEEECCSHHHHHHHHHHHHHC T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEECC--EEEEECCCHHHHHHHHHHHCCC T ss_conf 884299999999998598364677567--1788525677789999987169 No 70 >d1wh8a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=70.83 E-value=2.4 Score=19.31 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=37.1 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 22104899999998521011104679999-7433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) .+|+..+.|.-++..+..++++|.-.|+. +|+|+.+++.+|+ T Consensus 25 ~eLDT~~Ia~~v~~~L~~~~I~Q~~Fa~~VL~rSQGtlSdLL~ 67 (111) T d1wh8a_ 25 PELDTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLS 67 (111) T ss_dssp CCCCHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 5368999999999999985832999999998008278999983 No 71 >d1nr3a_ d.236.1.1 (A:) DNA-binding protein Tfx {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=70.52 E-value=0.2 Score=26.21 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.4 Q ss_pred HHCCCCHHHHHHHHHHHHHHHH Q ss_conf 1011104679999743378778 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVA 170 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~ 170 (300) .+.|+||.+||+.+|-||+.|+ T Consensus 2 R~kGltQ~eIA~~LgTSraNIs 23 (122) T d1nr3a_ 2 RERGWSQKKIARELKTTRQNVS 23 (122) T ss_dssp CCCSCSSCSTHHHHHHCCSSSC T ss_pred CCCCCCHHHHHHHHCCCHHHHH T ss_conf 6256779999999776588999 No 72 >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=70.28 E-value=2.4 Score=19.29 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=23.1 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111046799997433787786565 Q gi|254780805|r 145 EQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|....-.+..++|+.+|.|+++|..+++ T Consensus 10 ~~L~~n~r~s~~eiA~~l~ls~~~v~~Ri~ 39 (60) T d2cyya1 10 KILQNDGKAPLREISKITGLAESTIHERIR 39 (60) T ss_dssp HHHHHCTTCCHHHHHHHHCSCHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999982899999999998939999999999 No 73 >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} Probab=70.11 E-value=3 Score=18.66 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=34.0 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 6654310221048999999985210111046799997433787786565 Q gi|254780805|r 126 IVENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 126 l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.+.+...++++. ++..+..+....+.|+.+||+.++.++++|++.+. T Consensus 24 ~~~~l~~~glt~~-q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~ 71 (143) T d1s3ja_ 24 MLESMEKQGVTPA-QLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMAD 71 (143) T ss_dssp HHHHHHHTTCCHH-HHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999988697999-99999999977998999999998969889999999 No 74 >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Probab=70.05 E-value=2.8 Score=18.86 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=31.6 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..-+|++- ++..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 27 ~~~gLt~~-q~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i~ 69 (137) T d1z91a1 27 DKLNITYP-QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 69 (137) T ss_dssp TTTCCCHH-HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH T ss_pred HHCCCCHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 78496999-99999998758999899999997968888979999 No 75 >d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=69.57 E-value=1.2 Score=21.16 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=23.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH Q ss_conf 0467999974337877865656-54358999987 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRI-LKLPSSVREMI 186 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrL-l~L~~~i~~~l 186 (300) |..++|+..|.|.++||+.|.= -..+++.++.| T Consensus 2 Ti~dvA~~agVS~sTVSr~ln~~~~vs~~tr~rV 35 (57) T d1qpza1 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAV 35 (57) T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 8999999989599999999779985689999999 No 76 >d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=69.53 E-value=1.1 Score=21.46 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=24.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 104679999743378778656565-4358999987 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300) .|..++|+..|.|.++|++.|.=- ..+++..+.| T Consensus 2 vTi~dvA~~agvS~~TVSr~Ln~~~~Vs~~tr~rV 36 (57) T d2hsga1 2 VTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKV 36 (57) T ss_dssp CCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 69999998989599999999689886798999999 No 77 >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} Probab=68.83 E-value=1.8 Score=20.04 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.8 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +..|.+....+..+||+.+|.|.++|..+++ T Consensus 11 L~~L~~~~r~s~~eiA~~l~ls~~~v~~Ri~ 41 (63) T d2cg4a1 11 LEALMGNARTAYAELAKQFGVSPETIHVRVE 41 (63) T ss_dssp HHHHHHCTTSCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999983899999999998939999999999 No 78 >d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]} Probab=68.39 E-value=3.3 Score=18.43 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=30.1 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH Q ss_conf 5210111046799997433787786565654-35899998764 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILK-LPSSVREMIRK 188 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~-L~~~i~~~l~~ 188 (300) ++.+...|+.+|++.+|.|-++|++-=+-++ -++..+..|.. T Consensus 53 ~L~~G~~s~reI~~~~gvs~aTItR~s~~Lk~~~~~~k~~L~~ 95 (101) T d1jhga_ 53 ELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE 95 (101) T ss_dssp HHHHCCSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 9990896799999996987577889999987288589999999 No 79 >d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Probab=67.72 E-value=2.3 Score=19.46 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=28.2 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565654 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +.-+|... +.+.++.+| +..+.|+.+|.|++++.+.|+=.. T Consensus 18 ~~~~Er~~-I~~aL~~~g-n~~~aA~~Lgisr~tL~rKlkk~g 58 (61) T d1g2ha_ 18 IGFYEAQV-LKLFYAEYP-STRKLAQRLGVSHTAIANKLKQYG 58 (61) T ss_dssp CSHHHHHH-HHHHHHHSC-SHHHHHHHTTSCTHHHHHHHHTTT T ss_pred HHHHHHHH-HHHHHHHCC-CHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 99999999-999999878-999999997988999999999967 No 80 >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} Probab=67.04 E-value=3.3 Score=18.43 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 046799997433787786565654 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) +..++|+.+|.|+++|.+.|..|. T Consensus 24 se~~La~~~~vSr~tvr~Al~~L~ 47 (78) T d3bwga1 24 VLETLMAQFEVSKSTITKSLELLE 47 (78) T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 799999998879899999999999 No 81 >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} Probab=66.87 E-value=3.4 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.4 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 011104679999743378778656565 Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ..++|+.+||+.+|.++++|++.+.-+ T Consensus 19 ~~~lt~~eLa~~l~i~~~~vs~~l~~L 45 (85) T d3ctaa1 19 RAYLTSSKLADMLGISQQSASRIIIDL 45 (85) T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999889999999887887899999999 No 82 >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Probab=64.94 E-value=2.4 Score=19.26 Aligned_cols=30 Identities=10% Similarity=0.345 Sum_probs=23.6 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9985210111046799997433787786565 Q gi|254780805|r 144 YEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++.+. +..+|..+||+.+|.|+++|++.+. T Consensus 5 l~~i~-~~pisr~eLa~~~gls~~TVs~~v~ 34 (62) T d2hoea1 5 LKRIM-KSPVSRVELAEELGLTKTTVGEIAK 34 (62) T ss_dssp HHHHH-HSCBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999-7896999999998939999999999 No 83 >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=64.78 E-value=2.9 Score=18.81 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=22.1 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |....-.|..++|+.+|.|+++|.++++ T Consensus 12 L~~n~r~s~~~lA~~~gls~~~v~~Ri~ 39 (60) T d1i1ga1 12 LEKDARTPFTEIAKKLGISETAVRKRVK 39 (60) T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9884999999999998929999999999 No 84 >d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=63.76 E-value=1.4 Score=20.73 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=23.4 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH Q ss_conf 104679999743378778656565----4358999987 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL----KLPSSVREMI 186 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl----~L~~~i~~~l 186 (300) +|-.++|+..|.|.++||+.|.=- ..+++..+.| T Consensus 1 vTl~diA~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV 38 (59) T d1uxda_ 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKV 38 (59) T ss_dssp CCHHHHHHHHTSCTTHHHHHHHTCGGGTTCTTTTHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHH T ss_conf 97999999979699999999849987675799999999 No 85 >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=63.10 E-value=4.1 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.569 Sum_probs=19.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04679999743378778656565 Q gi|254780805|r 154 TQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 154 t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +..++|+.+|.|+++|.+.+..| T Consensus 29 s~~eLa~~~~vSr~tvr~Al~~L 51 (74) T d1hw1a1 29 AERELSELIGVTRTTLREVLQRL 51 (74) T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH T ss_pred CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 49999999897989999999999 No 86 >d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]} Probab=63.03 E-value=2.6 Score=19.04 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=29.7 Q ss_pred CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985--21011104679999743378778656 Q gi|254780805|r 133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|+|-|...--.+. .+...+|..+||+.+|.|+..|+..- T Consensus 17 ~~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie 59 (87) T d1ttya_ 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIE 59 (87) T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 6399999999999727789996889999999598899999999 No 87 >d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=63.00 E-value=1.4 Score=20.89 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=23.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH Q ss_conf 104679999743378778656565-4358999987 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRIL-KLPSSVREMI 186 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl-~L~~~i~~~l 186 (300) .|..++|+..|.|.++||+.|.=- ..+++..+.| T Consensus 3 ~Ti~diA~~agvS~sTVSr~l~~~~~vs~~tr~rI 37 (59) T d1efaa1 3 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKV 37 (59) T ss_dssp CCHHHHHHTTTSCHHHHHHHHTTCSSCCTHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH T ss_conf 88999998979799999999779986799999999 No 88 >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Probab=62.78 E-value=4.2 Score=17.75 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=29.5 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++.+-. .+..+...-+.|+.++|+.+|.++++|++.+. T Consensus 32 ~~lt~~q~~-vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~ 72 (141) T d1lnwa_ 32 LDLTPPDVH-VLKLIDEQRGLNLQDLGRQMCRDKALITRKIR 72 (141) T ss_dssp CCCCHHHHH-HHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHHHH-HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 798999999-99999987998999999997845737999999 No 89 >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} Probab=61.70 E-value=3.4 Score=18.34 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=31.0 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|++.+ +..+..+...-+.|+.+||+.+|.+++++++.+. T Consensus 30 ~glt~~q-~~vL~~i~~~~~~t~~~la~~l~~~~~~~s~~l~ 70 (136) T d2bv6a1 30 YNLTYPQ-FLVLTILWDESPVNVKKVVTELALDTGTVSPLLK 70 (136) T ss_dssp HTCCHHH-HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH T ss_pred CCCCHHH-HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 6979999-9999999728997999999997978837999999 No 90 >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} Probab=61.55 E-value=3.9 Score=17.94 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=23.0 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101-11046799997433787786565 Q gi|254780805|r 143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..|.++. ..+..+||+.+|.|+++|++.++ T Consensus 11 ~I~~l~~~~~~v~~~~iA~~L~vs~~SVs~mik 43 (61) T d2ev0a1 11 QIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQ 43 (61) T ss_dssp HHHHHHHHHSSCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH T ss_conf 999998358975099999995899515999999 No 91 >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} Probab=60.43 E-value=4.4 Score=17.58 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHCCCCCC Q ss_conf 8899999998863100155 Q gi|254780805|r 60 SEGLEDLCQSIKSHGIIQP 78 (300) Q Consensus 60 ~~~l~eLa~SI~~~G~lqP 78 (300) ...+..=-..+.+.|++.. T Consensus 42 ~~~v~~HL~~L~~~Glv~~ 60 (194) T d2p4wa1 42 QKAVLEHLRILEEAGLIES 60 (194) T ss_dssp HHHHHHHHHHHHHTTSEEE T ss_pred HHHHHHHHHHHHHCCCEEE T ss_conf 9899999999998897079 No 92 >d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]} Probab=60.12 E-value=4.6 Score=17.48 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=29.1 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..|+|.|.... .++.. |++..+||..++.|..+|..+++ T Consensus 21 ~~LT~rE~~vl--~ll~~-G~s~~eIA~~l~iS~~TV~~~~~ 59 (87) T d1p4wa_ 21 KRLSPKESEVL--RLFAE-GFLVTEIAKKLNRSIKTISSQKK 59 (87) T ss_dssp SSCCHHHHHHH--HHHHH-TCCHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHHHHHH--HHHHC-CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 88999999999--99992-89999998786979999999999 No 93 >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Probab=59.56 E-value=4.7 Score=17.39 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.0 Q ss_pred HHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 310221048999999985210111046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...-+|++.+ +..+..+.+.-|.|+.+||+.+|.++++|++.+. T Consensus 22 ~~~~~lt~~q-~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~ 65 (144) T d1lj9a_ 22 FKELSLTRGQ-YLYLVRVCENPGIIQEKIAELIKVDRTTAARAIK 65 (144) T ss_dssp TGGGTCTTTH-HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8876989999-9999999828998999999987824716999999 No 94 >d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]} Probab=57.54 E-value=5.1 Score=17.17 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 489999999852101110467999974337877865656 Q gi|254780805|r 137 PLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 137 p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) +=-...+.+..+..-|.|..++|+.+|.|.++|.+-++- T Consensus 8 ~EfK~~aV~l~~~~~g~s~~~vA~~lGIs~~tl~~W~k~ 46 (89) T d2jn6a1 8 EEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIK 46 (89) T ss_dssp HHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 999999999999829985999999979898899999999 No 95 >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} Probab=55.42 E-value=5.5 Score=16.95 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=23.0 Q ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999852101-11046799997433787786565 Q gi|254780805|r 143 GYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ++..|.++. ..+..+||+.+|.++++|+..++ T Consensus 13 ~I~~L~~~~~~v~~~~iA~~L~vs~~SVt~mvk 45 (63) T d2isya1 13 TIYDLEEEGVTPLRARIAERLDQSGPTVSQTVS 45 (63) T ss_dssp HHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHH T ss_conf 999998558977099999996899443999999 No 96 >d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Escherichia coli [TaxId: 562]} Probab=54.34 E-value=0.29 Score=25.23 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=40.3 Q ss_pred CCCCCHHHHHHHHH--------HHCCCCCCCCCCCCCHHHHHHHH----HHHHHCCCCCHHHHHHHHHHHHHHCCCC-HH Q ss_conf 33357567777764--------21001354333464112345566----6543102210489999999852101110-46 Q gi|254780805|r 90 KIIAGERRFRAAKM--------ASLSEVPVIIRNVDNKSSLEIAI----VENVQRKDLNPLEEALGYEQLISEYGYT-QN 156 (300) Q Consensus 90 ~ii~G~rR~rAa~~--------~g~~~ip~iv~~~~d~~~~~~~l----~EN~~R~dl~p~e~A~~~~~l~~~~~~t-~~ 156 (300) .|.+|+|||.-.+- +|...+.-++.-..+...-.+.+ .||-.|.. ++-..+-.|+..+-.. .. T Consensus 11 iImDGNrRwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~gI~~lTvYaFStEN~~R~~----~Ev~~Lm~l~~~~l~~~~~ 86 (228) T d1ueha_ 11 IIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPA----QEVSALMELFVWALDSEVK 86 (228) T ss_dssp EECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEC------------------CHHHHHHHHHTHH T ss_pred EECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC----CHHHHHHHHHHHHHHHHHH T ss_conf 964587899987799765899999999999999998769868985411454214543----0267899999999987688 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 79999743378778656565435899998764210 Q gi|254780805|r 157 DIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 157 ~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) ++ ..-|..-.+|- .+..||+.+++.+..-+- T Consensus 87 ~~-~~~~i~i~~iG---~~~~lp~~~~~~i~~~e~ 117 (228) T d1ueha_ 87 SL-HRHNVRLRIIG---DTSRFNSRLQERIRKSEA 117 (228) T ss_dssp HH-HHTTCEEEEES---CCTTSCHHHHHHHHHHHH T ss_pred HH-HHCCEEEEEEC---CCCHHHHHHHHHHHHHHH T ss_conf 88-85357999989---863222356666666788 No 97 >d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]} Probab=53.55 E-value=5.5 Score=16.98 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=25.3 Q ss_pred HHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH Q ss_conf 999985210111---046799997433787786565 Q gi|254780805|r 142 LGYEQLISEYGY---TQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 142 ~~~~~l~~~~~~---t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+..+|+.+.|+ |..+||++.|.|++++.++.. T Consensus 13 ~aa~~l~~~~G~~~~sv~~Ia~~agvs~~t~Y~~F~ 48 (71) T d2iu5a1 13 KAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQ 48 (71) T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCS T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCC T ss_conf 999999998496407799999875716458977767 No 98 >d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]} Probab=53.52 E-value=5.9 Score=16.76 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=26.6 Q ss_pred CCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985--21011104679999743378778656 Q gi|254780805|r 134 DLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 134 dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .|++-|...--.+. -+...+|..++|+.+|.|+.+|+..- T Consensus 8 ~L~~rer~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~ 49 (61) T d1ku3a_ 8 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIE 49 (61) T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 099999999999847789997789998899798899999999 No 99 >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} Probab=53.18 E-value=5 Score=17.24 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=29.4 Q ss_pred HCCCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985--210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..-+|++-+-. .+.-+ .+..+.|+.+||+.+|.++++|++.+. T Consensus 26 ~~~~Lt~~q~~-vL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~i~ 70 (115) T d1hsja1 26 KKFNLNYEEIY-ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQ 70 (115) T ss_dssp SSCCCCHHHHH-HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHH T ss_pred HHCCCCHHHHH-HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 45599999999-9999980689994899999997888535999999 No 100 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=52.77 E-value=6 Score=16.75 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=21.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHH Q ss_conf 11046799997433787786565-65435 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR-ILKLP 179 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr-Ll~L~ 179 (300) .+|.+++|+.+|.|++++.+..+ ....+ T Consensus 19 ~~tl~~lA~~~~~s~~~l~r~Fk~~~g~t 47 (54) T d1bl0a1 19 PLSLEKVSERSGYSKWHLQRMFKKETGHS 47 (54) T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHHHSSC T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCC T ss_conf 99999999998939999999999999919 No 101 >d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Probab=52.69 E-value=6.1 Score=16.67 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=31.0 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHH Q ss_conf 104899999998521011104679999-74337877865656 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILRI 175 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~LrL 175 (300) +...+.|.-++..+..++++|.--|+. +|+|+.+++..|+= T Consensus 10 ~~T~~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrk 51 (88) T d2csfa1 10 NITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRW 51 (88) T ss_dssp CCCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHCC T ss_conf 149999999999999949779999999983180779999808 No 102 >d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]} Probab=52.50 E-value=4.6 Score=17.49 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=25.9 Q ss_pred HHHHHHHHHHHCC------C-CHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998521011------1-046799997433787786565654 Q gi|254780805|r 140 EALGYEQLISEYG------Y-TQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 140 ~A~~~~~l~~~~~------~-t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+..+...+.... + |..+||+.+|.|+.+|.+.+..|. T Consensus 14 i~~~i~~~I~~g~l~~G~~LPs~r~La~~~~vSr~tvr~Al~~L~ 58 (100) T d1v4ra1 14 VATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK 58 (100) T ss_dssp HHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999849999939883699999998879899999999999 No 103 >d1d1la_ a.35.1.2 (A:) cro lambda repressor {Bacteriophage lambda [TaxId: 10710]} Probab=52.18 E-value=4.6 Score=17.49 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=21.9 Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101110467999974337877865656 Q gi|254780805|r 146 QLISEYGYTQNDIGSIVGKSRSHVANILRI 175 (300) Q Consensus 146 ~l~~~~~~t~~~lA~~~G~s~s~V~~~LrL 175 (300) ....++| |...|+.||..++.|+..+|- T Consensus 9 dyv~~~G--QaKaA~~LGv~Q~AIsKAira 36 (61) T d1d1la_ 9 DYAMRFG--QTKTAKDLGVYQSAINKAIHA 36 (61) T ss_dssp HHHHHHC--HHHHHHHHTCCTHHHHHHHHT T ss_pred HHHHHHC--HHHHHHHCCCCHHHHHHHHHC T ss_conf 9999977--598999829648899999963 No 104 >d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]} Probab=51.87 E-value=6.3 Score=16.59 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=27.6 Q ss_pred CCCHHHHHHHHHHH-HH-HCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985-21-011104679999743378778656 Q gi|254780805|r 134 DLNPLEEALGYEQL-IS-EYGYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 134 dl~p~e~A~~~~~l-~~-~~~~t~~~lA~~~G~s~s~V~~~L 173 (300) .|+|-|...-..+. ++ .-.+|.+++|+.+|.|+..|++.- T Consensus 5 ~L~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrerVrqie 46 (68) T d2p7vb1 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 46 (68) T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 399999999999808899986889999999797899999999 No 105 >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=51.79 E-value=6.3 Score=16.58 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=28.0 Q ss_pred CCCCHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985--210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQL--ISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l--~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|+..+- ..+..+ .++.++++.+||+.+|.+++++++.+. T Consensus 29 ~~Ls~~q~-~vL~~l~~~~~~~~~~~~ia~~l~~~~~~vs~~v~ 71 (125) T d1p4xa2 29 LTLSFVEF-TILAIITSQNKNIVLLKDLIETIHHKYPQTVRALN 71 (125) T ss_dssp CSSCHHHH-HHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHH T ss_pred CCCCHHHH-HHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 69999999-99999998037883699999997898424999999 No 106 >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=51.14 E-value=6.5 Score=16.52 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.2 Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 048999999985210111046799997433787786565 Q gi|254780805|r 136 NPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 136 ~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|...+ .+..|.....+|..+||+.+|.++++|++.++ T Consensus 15 ~p~r~~-IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~ 52 (100) T d1ub9a_ 15 NPVRLG-IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100) T ss_dssp SHHHHH-HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH T ss_pred CHHHHH-HHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHH T ss_conf 999999-99876047990199999998625432309999 No 107 >d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=50.73 E-value=6.6 Score=16.47 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=23.8 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH Q ss_conf 999998521011104679999743------3787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr 174 (300) |..|+.-.=..|+||.+++..+|. |+++|++.=+ T Consensus 13 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~ 52 (75) T d1e3oc2 13 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 52 (75) T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 9999987884365589999999987175025889999997 No 108 >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} Probab=50.40 E-value=6.7 Score=16.44 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=29.0 Q ss_pred HHCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 3102210489999999852101-11046799997433787786565 Q gi|254780805|r 130 VQRKDLNPLEEALGYEQLISEY-GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 130 ~~R~dl~p~e~A~~~~~l~~~~-~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+..++++. ++..+..|.... +.|+.+||+.+|.++++|++.+. T Consensus 27 ~~~~glt~~-q~~vL~~L~~~~g~~t~~~La~~~~~~~~~vs~~i~ 71 (145) T d2hr3a1 27 AQADPVQFS-QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLR 71 (145) T ss_dssp TCCCHHHHH-HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHCCCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 636398999-999999999859997999999997989889999999 No 109 >d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]} Probab=50.23 E-value=6.7 Score=16.43 Aligned_cols=62 Identities=23% Similarity=0.326 Sum_probs=38.8 Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHH--H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH Q ss_conf 666543102210489999999852--1-011104679999743378778656565435--89999876 Q gi|254780805|r 125 AIVENVQRKDLNPLEEALGYEQLI--S-EYGYTQNDIGSIVGKSRSHVANILRILKLP--SSVREMIR 187 (300) Q Consensus 125 ~l~EN~~R~dl~p~e~A~~~~~l~--~-~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~--~~i~~~l~ 187 (300) .++++. ..+|+|-|+-.+-.-+- + -...|..++|+..|.|.++|.+..+-+... .+++..+. T Consensus 7 ~~i~~~-~~~Ls~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~~gf~e~k~~l~ 73 (83) T d2o3fa1 7 AIIQSM-KHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVA 73 (83) T ss_dssp HHHHHH-GGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH T ss_pred HHHHHH-HHHCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 999988-8657899999999998299999883199999997989989999999958998999999999 No 110 >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Probab=48.86 E-value=7 Score=16.29 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=29.7 Q ss_pred HHHHCCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5431022104899999998521--0111046799997433787786565 Q gi|254780805|r 128 ENVQRKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 128 EN~~R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+..-+|++.+-. .+.-+.. ..++|+.+||+.+|.++++|++.+. T Consensus 20 ~~l~~~glt~~q~~-vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~ 67 (135) T d3broa1 20 IFAKKYDLTGTQMT-IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQ 67 (135) T ss_dssp HHHHTTTCCHHHHH-HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHCCCCHHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99988699999999-9999997079999999999998968868999999 No 111 >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Probab=48.85 E-value=6.5 Score=16.52 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHCCEEEEE---C-CCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 89999999999739879997---1-798228999858-9899999999837 Q gi|254780805|r 249 YLTDLEKKISSKVGLNISIK---H-RNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 249 ~i~~le~~L~~~lGtkV~I~---~-~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) +-.++.+.|-+..|.-|. . . ..+.|-+.|.|. +.+.++.-+++|. T Consensus 338 ~~~~~~~~Ll~~~gV~v~-pG~~Fg~~~~~~iRis~~~~~e~i~eal~rl~ 387 (394) T d1c7na_ 338 DHKAMEEFMIHKAQIFFD-EGYIFGDGGIGFERINLAAPSSVIQESLERLN 387 (394) T ss_dssp CHHHHHHHHHHTTCCCCE-EGGGGCGGGTTEEEEECCSCHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHCCEEEE-CCHHHCCCCCCEEEEEEECCHHHHHHHHHHHH T ss_conf 999999999986999997-42341889998799999589999999999999 No 112 >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} Probab=48.51 E-value=7.1 Score=16.26 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=30.8 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+|++.+ +..+..+-...+.|+.+||+.+|.++++|++.+. T Consensus 25 ~~glt~~q-~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~ 66 (136) T d2fbia1 25 QHGLTEQQ-WRVIRILRQQGEMESYQLANQACILRPSMTGVLA 66 (136) T ss_dssp HHTCCHHH-HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 84979999-9999999976998999999998878988999999 No 113 >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} Probab=47.59 E-value=7.3 Score=16.16 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=20.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1046799997433787786565654 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++..++|+.+|.|+++|...|..|. T Consensus 26 l~~~~La~~~~vSr~tvr~Al~~L~ 50 (69) T d2hs5a1 26 LSEPDICAALDVSRNTVREAFQILI 50 (69) T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 6999999998979899999999999 No 114 >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Probab=46.68 E-value=7.6 Score=16.08 Aligned_cols=42 Identities=7% Similarity=0.049 Sum_probs=30.4 Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0221048999999985210111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .-+|++-+ +..+..+...-+.|+.+||+.+|.++++|++.+. T Consensus 29 ~~~Lt~~q-~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~ 70 (138) T d1jgsa_ 29 PLDITAAQ-FKVLCSIRCAACITPVELKKVLSVDLGALTRMLD 70 (138) T ss_dssp TTTSCHHH-HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HCCCCHHH-HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 86989999-9998868718098999999997878857999999 No 115 >d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]} Probab=45.76 E-value=7.8 Score=15.99 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=22.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||+..|.|++++.++.. T Consensus 13 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 45 (73) T d1t56a1 13 ENLLEDRPLADISVDDLAKGAGISRPTFYFYFP 45 (73) T ss_dssp HHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999997591507799999986988889988884 No 116 >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Probab=45.66 E-value=7.9 Score=15.98 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=13.6 Q ss_pred EEEEEEECCHHHHHHHHHHHCC Q ss_conf 2899985898999999998375 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~~ 295 (300) |+|.+-.-+.++++++.+.|.+ T Consensus 385 ~Ri~~ag~~~~~i~~~a~aI~~ 406 (412) T d1ajsa_ 385 GRINMCGLTTKNLDYVATSIHE 406 (412) T ss_dssp SEEEGGGCCTTTHHHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHHH T ss_conf 8688336988889999999999 No 117 >d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]} Probab=45.12 E-value=8 Score=15.92 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=23.6 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++.+.| .|-.+||+..|.|++++.++.. T Consensus 15 a~~l~~~~G~~~~t~~~Ia~~agvs~~~iY~~F~ 48 (68) T d2id3a1 15 AGDALAADGFDALDLGEIARRAGVGKTTVYRRWG 48 (68) T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999998493407799999997868879999985 No 118 >d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase {Micrococcus luteus [TaxId: 1270]} Probab=44.41 E-value=0.54 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 56543589999876421 Q gi|254780805|r 174 RILKLPSSVREMIRKEE 190 (300) Q Consensus 174 rLl~L~~~i~~~l~~~~ 190 (300) .+-.||+.+++.+..-+ T Consensus 102 ~~~~lp~~l~~~i~~~e 118 (229) T d1f75a_ 102 FIDDLPDHTKKAVLEAK 118 (229) T ss_dssp CGGGSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 22343688888899999 No 119 >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Probab=44.11 E-value=8.3 Score=15.82 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=28.9 Q ss_pred CCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 022104899999998521--0111046799997433787786565 Q gi|254780805|r 132 RKDLNPLEEALGYEQLIS--EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 132 R~dl~p~e~A~~~~~l~~--~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+|++.+ +..+..+.. +.++|+.+||+.++.++++|++.+. T Consensus 29 ~~~Lt~~q-~~iL~~l~~~~~~~~t~~eia~~~~~~~~~vs~~l~ 72 (125) T d1p4xa1 29 EVDMTIKE-FILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIK 72 (125) T ss_dssp TCSSCHHH-HHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHH T ss_pred HCCCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 74998899-999999998436986799999996888243999999 No 120 >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Probab=44.09 E-value=8.3 Score=15.82 Aligned_cols=37 Identities=3% Similarity=0.240 Sum_probs=22.4 Q ss_pred HHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 999999739879997179822899985898999999998375 Q gi|254780805|r 254 EKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 254 e~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) -.+|.+..|.-+ .. .++|.+-+-+.++++++.+.|.+ T Consensus 362 ~~~L~~e~gV~~----~p-g~Ris~a~~~~~~i~~la~ai~~ 398 (401) T d7aata_ 362 VERLTKEFSIYM----TK-DGRISVAGVASSNVGYLAHAIHQ 398 (401) T ss_dssp HHHHHHHHCEEC----CT-TCEEEGGGCCTTTHHHHHHHHHH T ss_pred HHHHHHHCCEEE----CC-CCEEEECCCCHHHHHHHHHHHHH T ss_conf 999998299998----89-71798526998889999999999 No 121 >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Probab=43.62 E-value=8.4 Score=15.78 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=21.7 Q ss_pred HHHHHHHHHHCCEEEEEC----CCCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 999999997398799971----798228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISIKH----RNNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I~~----~~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++..++-+.-|.-|. .. ....|-+.|.|. +.++++.-+++|. T Consensus 343 ~~~~~ll~~~gV~v~-PG~~Fg~~~~~~~Ris~~~~~e~l~eal~rl~ 389 (395) T d1xi9a_ 343 EFVLDVLHNAHVLFV-HGSGFGEYGAGHFRAVFLPPIEILEEAMDRFE 389 (395) T ss_dssp HHHHHHHHHHCEECE-EGGGGCGGGTTBEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEE-CCHHHCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 999999996999998-47332889979799996489999999999999 No 122 >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Probab=43.51 E-value=8.5 Score=15.77 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=29.1 Q ss_pred CCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852--1011104679999743378778656565 Q gi|254780805|r 133 KDLNPLEEALGYEQLI--SEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~--~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -+|++.+-..- ..+. ++.++|+.+||+.++.++++|++.+.-+ T Consensus 29 ~~Ls~~q~~vL-~~l~~~~~~~~t~~~la~~l~~~~~tvs~~i~~L 73 (115) T d2frha1 29 FSISFEEFAVL-TYISENKEKEYYLKDIINHLNYKQPQVVKAVKIL 73 (115) T ss_dssp TCCCHHHHHHH-HHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHH T ss_pred CCCCHHHHHHH-HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 59899999999-9998089999889999999797886899999999 No 123 >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Probab=42.44 E-value=8.8 Score=15.66 Aligned_cols=21 Identities=10% Similarity=0.393 Sum_probs=15.0 Q ss_pred EEEEEEECCHHHHHHHHHHHC Q ss_conf 289998589899999999837 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300) ++|.|.+-+.++++++.+.+. T Consensus 374 ~Ri~~a~~~~~~i~~~~~ai~ 394 (397) T d3tata_ 374 GRMCVAGLNTANVQRVAKAFA 394 (397) T ss_dssp SCCBTTSCCTTTHHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHH T ss_conf 879852599889999999999 No 124 >d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]} Probab=42.33 E-value=8.8 Score=15.65 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8999999985210111046799997433787786565654 Q gi|254780805|r 138 LEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 138 ~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) ++.-..|..+.+ +| +-...|+.+|.|++.|++.++-++ T Consensus 3 l~~L~~f~~v~e-~g-s~~~AA~~L~isq~avs~~i~~LE 40 (89) T d1ixca1 3 FRQLKYFIAVAE-AG-NMAAAAKRLHVSQPPITRQMQALE 40 (89) T ss_dssp HHHHHHHHHHHH-HS-SHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH-HC-CHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 899999999998-09-999999985899278899999998 No 125 >d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]} Probab=42.31 E-value=8.7 Score=15.70 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=23.4 Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011---1046799997433787786565 Q gi|254780805|r 144 YEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...++.+.| .|.++||+..|.|++++.++.. T Consensus 10 a~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~ 43 (71) T d1jt6a1 10 AKELFIKNGYNATTTGEIVKLSESSKGNLYYHFK 43 (71) T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHHS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 9999998591406799999987858759988884 No 126 >d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=42.02 E-value=8.9 Score=15.62 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=23.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHH Q ss_conf 999998521011104679999743------3787786565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGK------SRSHVANILR 174 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~------s~s~V~~~Lr 174 (300) |..|+.-.=..|+||.+++..+|. |+++|.+.=+ T Consensus 9 a~~fk~rRi~LG~TQ~dVG~al~~l~g~~~SQttIcRFE~ 48 (72) T d1au7a2 9 ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFEN 48 (72) T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHT T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 9999987742686299999999986186555037788885 No 127 >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} Probab=42.00 E-value=8.9 Score=15.62 Aligned_cols=41 Identities=20% Similarity=-0.020 Sum_probs=29.4 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 221048999999985210111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -+|++.+ +..+.-+...-+.|+.+||+.+|.++++|++.+. T Consensus 37 ~~Lt~~q-~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~ 77 (162) T d2fxaa1 37 YDLNINE-HHILWIAYQLNGASISEIAKFGVMHVSTAFNFSK 77 (162) T ss_dssp GTCCHHH-HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCHHH-HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHH T ss_conf 5999899-9999652118991899999997699403199899 No 128 >d2esna1 a.4.5.37 (A:3-91) Probable LysR-type transcriptional regulator PA0477 {Pseudomonas aeruginosa [TaxId: 287]} Probab=41.41 E-value=9.1 Score=15.56 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.7 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998521011104679999743378778656565 Q gi|254780805|r 141 ALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 141 A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) -..|..+.+. | +-...|+.+|.|+++|++.|+-+ T Consensus 11 L~~f~~v~~~-g-s~t~AA~~l~isq~avs~~l~~l 44 (89) T d2esna1 11 LLVFDALYRH-R-NVGTAASELAISASAFSHALGRL 44 (89) T ss_dssp HHHHHHHHHH-S-SHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHHHHHHH-C-CHHHHHHHHCCCCCHHHHHHHHH T ss_conf 9999999980-9-99999998779984755999999 No 129 >d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]} Probab=41.03 E-value=8.1 Score=15.89 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=23.2 Q ss_pred HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9852101---11046799997433787786565 Q gi|254780805|r 145 EQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+. +.|..+||+..|.|++++.++.. T Consensus 13 ~~l~~~~G~~~~ti~~Ia~~agvs~~~iY~~F~ 45 (75) T d2id6a1 13 VEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK 45 (75) T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998393516799999884998889988887 No 130 >d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]} Probab=39.47 E-value=9.8 Score=15.37 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=22.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||++.|.|++++.++.. T Consensus 14 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~ 46 (69) T d2fq4a1 14 YELLLESGFKAVTVDKIAERAKVSKATIYKWWP 46 (69) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998392407799999997858879999987 No 131 >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} Probab=39.27 E-value=9.8 Score=15.35 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=28.3 Q ss_pred CCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 22104899999998521-0111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLIS-EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~~-~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) -++++.+ +..+..+.+ .-++|+.+||+.++.++++|++.++ T Consensus 27 ~glt~~~-~~~L~~l~~~~~~~t~~~la~~l~i~~~~vs~~l~ 68 (140) T d3deua1 27 LELTQTH-WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLD 68 (140) T ss_dssp TTCCHHH-HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHH T ss_pred CCCCHHH-HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 6979999-99999998749995699999997877767889999 No 132 >d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]} Probab=39.16 E-value=9.9 Score=15.34 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHH Q ss_conf 99999998521011104679999-7433787786565 Q gi|254780805|r 139 EEALGYEQLISEYGYTQNDIGSI-VGKSRSHVANILR 174 (300) Q Consensus 139 e~A~~~~~l~~~~~~t~~~lA~~-~G~s~s~V~~~Lr 174 (300) |.|.-++..+..++++|.--|+. +|+|+.+++..|+ T Consensus 5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~ 41 (83) T d2o4aa1 5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILR 41 (83) T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHC T ss_conf 9999999999994977999999998318077999981 No 133 >d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]} Probab=39.12 E-value=9.9 Score=15.33 Aligned_cols=29 Identities=14% Similarity=0.137 Sum_probs=22.5 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+. +.|..+||++.|.|++++.++.. T Consensus 18 ~l~~~~G~~~~t~~~Ia~~agvs~~t~y~~F~ 49 (78) T d2o7ta1 18 NLYRTHHHDSLTMENIAEQAGVGVATLYRNFP 49 (78) T ss_dssp HHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998491406799999883998879999886 No 134 >d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]} Probab=39.00 E-value=8.5 Score=15.74 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=24.2 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5210111046799997433787786565654358999 Q gi|254780805|r 147 LISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVR 183 (300) Q Consensus 147 l~~~~~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~ 183 (300) .+..|| +...+|+.+|.|++.|+.- -++-|+.. T Consensus 6 vi~~FG-~~~k~A~algis~~AVsqW---Ge~VPe~R 38 (61) T d1rzsa_ 6 VIDHFG-TQRAVAKALGISDAAVSQW---KEVIPEKD 38 (61) T ss_dssp HHHHHS-SHHHHHHHHTCCHHHHHHC---CSBCCHHH T ss_pred HHHHHC-CHHHHHHHHCCCHHHHHHH---HCCCCHHH T ss_conf 999957-7999999969989999988---63076989 No 135 >d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=38.57 E-value=10 Score=15.28 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|..+||+..|.|++++.++.. T Consensus 26 ~~s~~~Ia~~agvs~~~lY~~F~ 48 (77) T d2gfna1 26 AVTTRAVAEESGWSTGVLNHYFG 48 (77) T ss_dssp GCCHHHHHHHHSSCHHHHHHHTS T ss_pred CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 05799999987888779988883 No 136 >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Probab=38.23 E-value=10 Score=15.25 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=10.7 Q ss_pred EEEEEEECCHHHHHHHHHHHC Q ss_conf 289998589899999999837 Q gi|254780805|r 274 GQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 274 GkI~I~f~s~eeLe~Il~kL~ 294 (300) ++|.+..-+.+.++.+.+.|. T Consensus 385 ~Ris~~g~~~~~i~~l~~ai~ 405 (412) T d1yaaa_ 385 GRASIAGLNQGNVEYVAKAID 405 (412) T ss_dssp SEEEGGGCCTTTHHHHHHHHH T ss_pred CEEEECCCCHHHHHHHHHHHH T ss_conf 879851598888999999999 No 137 >d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]} Probab=37.43 E-value=11 Score=15.17 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=22.8 Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 998521011--104679999743378778656565 Q gi|254780805|r 144 YEQLISEYG--YTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 144 ~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ...|..++| -|.+|||+.+|.+...|...|.-. T Consensus 21 ~~~l~q~lgRePT~~EiA~~l~~~~e~V~~~l~a~ 55 (57) T d1l0oc_ 21 KDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAV 55 (57) T ss_dssp HHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999872999899999999793999999999983 No 138 >d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]} Probab=36.20 E-value=11 Score=15.04 Aligned_cols=29 Identities=24% Similarity=0.132 Sum_probs=22.7 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+. +.|-.+||+..|.|++++.++.. T Consensus 15 ~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~ 46 (79) T d2fbqa1 15 QLFAEKGFAETSLRLITSKAGVNLAAVNYHFG 46 (79) T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998693504099999998828557878776 No 139 >d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]} Probab=36.13 E-value=11 Score=15.04 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=23.1 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|..+||++.|.|++++.++.. T Consensus 14 ~~l~~~~G~~~~si~~Ia~~agvs~~~~Y~~F~ 46 (73) T d2fx0a1 14 KKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 46 (73) T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998693517699999987848649998884 No 140 >d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]} Probab=36.02 E-value=11 Score=15.02 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=22.6 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+. +.|..+||+..|.|++++.++.. T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~ 47 (75) T d2hyja1 16 EIASEEGLDGITIGRLAEELEMSKSGVHKHFG 47 (75) T ss_dssp HHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99997590307699999988909899988882 No 141 >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Probab=35.81 E-value=11 Score=15.00 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=20.6 Q ss_pred HHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCC Q ss_conf 99999739879997179822899985898999999998375 Q gi|254780805|r 255 KKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295 (300) Q Consensus 255 ~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~ 295 (300) ++|.+..|.-+ - . .|+|.|..-+.+.++++.+.|.+ T Consensus 356 ~~L~~~~~V~~--~--~-g~Ri~~a~l~~~~i~~l~~ai~~ 391 (394) T d2ay1a_ 356 KRIKEEFGIYM--V--G-DSRINIAGLNDNTIPILARAIIE 391 (394) T ss_dssp HHHHHHHCEEC--C--T-TCEEEGGGCCTTTHHHHHHHHHH T ss_pred HHHHHHCCEEE--C--C-CCEEEECCCCHHHHHHHHHHHHH T ss_conf 99999689895--6--9-87899537998889999999998 No 142 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=35.68 E-value=10 Score=15.24 Aligned_cols=23 Identities=13% Similarity=0.387 Sum_probs=19.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|.+++|+.+|.|++++.+..+ T Consensus 19 ~itl~~lA~~~~~S~~~l~r~Fk 41 (54) T d1d5ya1 19 PLSLDNVAAKAGYSKWHLQRMFK 41 (54) T ss_dssp SCCCHHHHTTTSSCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999999998929999999999 No 143 >d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]} Probab=35.18 E-value=11 Score=14.94 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=23.9 Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHH--HHHHHHHHHHHH Q ss_conf 9998521011--1046799997433--787786565654 Q gi|254780805|r 143 GYEQLISEYG--YTQNDIGSIVGKS--RSHVANILRILK 177 (300) Q Consensus 143 ~~~~l~~~~~--~t~~~lA~~~G~s--~s~V~~~LrLl~ 177 (300) +.++|..++| -|.+|+|+.+|.+ ...|...+++.. T Consensus 17 ~~~~l~qe~gRePt~eEiA~~l~~~l~~ekV~~~l~~~~ 55 (60) T d1ku2a1 17 TARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQ 55 (60) T ss_dssp HHHHHHHHHTSCCCHHHHHHHHCSSCCHHHHHHHGGGSS T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCC T ss_conf 999999996899999999998879999999999999755 No 144 >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Probab=35.11 E-value=11 Score=14.93 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=20.9 Q ss_pred HHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHC Q ss_conf 999999973987999717982289998589899999999837 Q gi|254780805|r 253 LEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLG 294 (300) Q Consensus 253 le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~ 294 (300) .-.+|.+..|.-+ - ..|+|.+..-+.++++.+++.|. T Consensus 357 ~~~~L~~e~gV~~--~---~g~Ri~~a~l~~~~i~~~~~ai~ 393 (396) T d2q7wa1 357 QVLRLREEFGVYA--V---ASGRVNVAGMTPDNMAPLCEAIV 393 (396) T ss_dssp HHHHHHHHHCEEC--C---TTCEEEGGGCCTTTHHHHHHHHH T ss_pred HHHHHHHHCCEEE--C---CCCEEEECCCCHHHHHHHHHHHH T ss_conf 9999999689997--7---99879952898788999999999 No 145 >d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]} Probab=35.04 E-value=8.2 Score=15.85 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=21.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 104679999743378778656565435 Q gi|254780805|r 153 YTQNDIGSIVGKSRSHVANILRILKLP 179 (300) Q Consensus 153 ~t~~~lA~~~G~s~s~V~~~LrLl~L~ 179 (300) .+..++|+.||.|..||.+-.+. -+| T Consensus 3 Vnk~~lA~iFGVS~~TI~~W~~~-G~P 28 (68) T d1j9ia_ 3 VNKKQLADIFGASIRTIQNWQEQ-GMP 28 (68) T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT-TCC T ss_pred CCHHHHHHHHCCCHHHHHHHHHC-CCC T ss_conf 68999999969988999999988-998 No 146 >d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]} Probab=34.62 E-value=12 Score=14.90 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.6 Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 1048999999985210111046799997433787786565 Q gi|254780805|r 135 LNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 135 l~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |+--|+|.. ..+...++|..++|+.+.+||-.|.+||. T Consensus 6 L~~~e~aql--DVm~~L~~slhemaR~i~rSR~~ir~Yl~ 43 (51) T d1tc3c_ 6 LSDTERAQL--DVMKLLNVSLHEMSRKISRSRHCIRVYLK 43 (51) T ss_dssp CCHHHHHHH--HHHHHTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 307899988--99999487699999999885999999956 No 147 >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Probab=34.46 E-value=12 Score=14.87 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=22.4 Q ss_pred HHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 9999999973987999717--98228999858-9899999999837 Q gi|254780805|r 252 DLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 252 ~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) ++..+|-...|.-|. ... ...|-|.|.|. +.++++.-+++|+ T Consensus 326 ~~~~~ll~~~gV~v~-pG~~F~~~g~iRis~~~~~e~l~~al~rl~ 370 (375) T d1o4sa_ 326 KFCERLLEEKKVALV-PGSAFLKPGFVRLSFATSIERLTEALDRIE 370 (375) T ss_dssp HHHHHHHHHHCEECE-EGGGGTCTTEEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCEEEE-ECCCCCCCCEEEEEECCCHHHHHHHHHHHH T ss_conf 999999985999999-761158999699997289999999999999 No 148 >d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]} Probab=34.21 E-value=10 Score=15.17 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=22.3 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+.| .|..+||+..|.|++++.++.. T Consensus 18 ~l~~~~G~~~~si~~Ia~~agvs~~t~Y~~F~ 49 (76) T d2fd5a1 18 QALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ 49 (76) T ss_dssp HHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCCCCHHHCCC T ss_conf 99998491305699999983899550042089 No 149 >d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]} Probab=33.77 E-value=12 Score=14.79 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.5 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+.| .|..+||+..|.|++++.++.. T Consensus 12 ~l~~~~G~~~~ti~~Ia~~agvs~~~~y~~F~ 43 (72) T d1vi0a1 12 EVIAENGYHQSQVSKIAKQAGVADGTIYLYFK 43 (72) T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998590415599999987949879988883 No 150 >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Probab=33.62 E-value=12 Score=14.78 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=23.0 Q ss_pred HHHHHHHHHHHCCEEEEECC--CCCEEEEEEEC-CHHHHHHHHHHHC Q ss_conf 99999999973987999717--98228999858-9899999999837 Q gi|254780805|r 251 TDLEKKISSKVGLNISIKHR--NNKGQFCIKYE-TNEQLKIICSLLG 294 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I~~~--~~kGkI~I~f~-s~eeLe~Il~kL~ 294 (300) .++..+|-+..|.-|. ... +..|-+.|.|. +.++|+.-+++|. T Consensus 336 ~~~~~~ll~~~gV~v~-pG~~F~~~~~~Rls~~~~~e~l~~al~rl~ 381 (388) T d1j32a_ 336 LDFCSELLDQHQVATV-PGAAFGADDCIRLSYATDLDTIKRGMERLE 381 (388) T ss_dssp HHHHHHHHHHHCEECE-EGGGGTCTTBEEEECCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCEEEE-ECCCCCCCCEEEEEEECCHHHHHHHHHHHH T ss_conf 9999999986999998-164359999699998389999999999999 No 151 >d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=33.10 E-value=12 Score=14.73 Aligned_cols=45 Identities=20% Similarity=0.094 Sum_probs=32.0 Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEECCHHHHHHHH Q ss_conf 897899999999997398799971798228999858989999999 Q gi|254780805|r 246 KEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIIC 290 (300) Q Consensus 246 k~~~i~~le~~L~~~lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il 290 (300) ...+...+.+-|.+.||.+.+|+..+++..|.|.-.|.+.|-.++ T Consensus 48 t~~e~~~L~~~L~~kf~l~~~i~~~~~~~~i~i~~~s~~~~~~lI 92 (105) T d1r7ma2 48 TFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLI 92 (105) T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEECGGGHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEEHHHHHHHHHHH T ss_conf 999999999999987394589995498479999302789999984 No 152 >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} Probab=33.03 E-value=12 Score=14.72 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=18.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHH Q ss_conf 1104679999743378778656 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANIL 173 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~L 173 (300) +.|..+||+.||.++..|.+.| T Consensus 24 ~~tA~~LAk~Lg~~Kk~VNr~L 45 (70) T d1sfua_ 24 YTTAISLSNRLKINKKKINQQL 45 (70) T ss_dssp EECHHHHHHHTTCCHHHHHHHH T ss_pred CCHHHHHHHHHCCCHHHHHHHH T ss_conf 7049999999598898988999 No 153 >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Probab=32.49 E-value=13 Score=14.66 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=25.5 Q ss_pred HHHHHHHHHHHHHCCEEEEE-CC--CCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 89999999999739879997-17--98228999858-98999999998375 Q gi|254780805|r 249 YLTDLEKKISSKVGLNISIK-HR--NNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 249 ~i~~le~~L~~~lGtkV~I~-~~--~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) +-..+.+.|.+. | |-|. .. ...|-+.|.|. +.|+++.-+++|.+ T Consensus 333 ~~~~~~~~l~e~-g--V~v~PG~~F~~~~~iRis~~~~~e~l~~al~rl~~ 380 (382) T d1b5pa_ 333 DEVRAAERLLEA-G--VAVVPGTDFAAFGHVRLSYATSEENLRKALERFAR 380 (382) T ss_dssp SHHHHHHHHHHT-T--EECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGG T ss_pred CHHHHHHHHHHC-C--EEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 999999999978-9--79995722589996999974999999999999998 No 154 >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=32.30 E-value=13 Score=14.64 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHCCEEEEE----C-CCCCEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 999999999739879997----1-798228999858-98999999998375 Q gi|254780805|r 251 TDLEKKISSKVGLNISIK----H-RNNKGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I~----~-~~~kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) .++.++|-+..| |-+. . ....|-+.|.|. +.|+++.-+++|.+ T Consensus 332 ~~~~~~ll~e~g--V~v~PG~~F~~~~~~~iRis~~~~~e~l~~al~rL~~ 380 (388) T d1gdea_ 332 KKFSELMLKEAR--VAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMER 380 (388) T ss_dssp HHHHHHHHHHTC--EECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCC--EEEEECHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 999999998599--9998104519899997999964999999999999999 No 155 >d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]} Probab=32.29 E-value=13 Score=14.64 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=22.8 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||+..|.|++++.++.. T Consensus 19 ~~l~~~~G~~~~t~~~Ia~~agvs~~~~Y~~F~ 51 (79) T d2oi8a1 19 WEQIATAGASALSLNAIAKRMGMSGPALYRYFD 51 (79) T ss_dssp HHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHCC T ss_conf 999998690306799999986799774455169 No 156 >d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]} Probab=32.19 E-value=13 Score=14.63 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=22.8 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.+.| .|..+||++.|.|++++.++.. T Consensus 16 ~l~~~~G~~~~t~~~Ia~~agvs~~~~y~~F~ 47 (75) T d3c07a1 16 RLFQERGYDRTTMRAIAQEAGVSVGNAYYYFA 47 (75) T ss_dssp HHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99997491407799999987939879998985 No 157 >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Probab=32.08 E-value=13 Score=14.62 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=26.7 Q ss_pred CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 21048999999985210-111046799997433787786565 Q gi|254780805|r 134 DLNPLEEALGYEQLISE-YGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 134 dl~p~e~A~~~~~l~~~-~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +|++. ++..+..+... .+.|+.+||+.+|.++++|++.+. T Consensus 25 glt~~-q~~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~ 65 (137) T d2fbha1 25 GLSQA-RWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 65 (137) T ss_dssp CCTTT-HHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 97999-999999998769997699999998978989999999 No 158 >d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]} Probab=31.98 E-value=13 Score=14.61 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=22.6 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21011104679999743378778656565 Q gi|254780805|r 148 ISEYGYTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 148 ~~~~~~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) +.+.| +-...|+.+|.|+++|++.++-+ T Consensus 29 i~~~g-s~~~AA~~l~~sq~avs~~i~~l 56 (127) T d1b9ma1 29 IALSG-SISQGAKDAGISYKSAWDAINEM 56 (127) T ss_dssp HHHHS-SHHHHHHHHTCCHHHHHHHHHHH T ss_pred HHHHC-CHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99959-95899988158762999999999 No 159 >d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]} Probab=31.76 E-value=13 Score=14.59 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.8 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||+..|.|++++.++.. T Consensus 14 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~y~~F~ 46 (72) T d1pb6a1 14 LDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 46 (72) T ss_dssp HHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSS T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998592506799999986978679998886 No 160 >d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=31.71 E-value=13 Score=14.58 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=24.6 Q ss_pred HHHHHHHHHHCCC-CHHHHHHHH---H---HHHHHHHHHHHHHHH Q ss_conf 9999985210111-046799997---4---337877865656543 Q gi|254780805|r 141 ALGYEQLISEYGY-TQNDIGSIV---G---KSRSHVANILRILKL 178 (300) Q Consensus 141 A~~~~~l~~~~~~-t~~~lA~~~---G---~s~s~V~~~LrLl~L 178 (300) -.++++|+.+..+ ||++|.+.| | .++++||+-|+-+.+ T Consensus 11 l~~I~~li~~~~i~tQ~eL~~~L~~~G~~~vTQaTiSRDL~eLg~ 55 (78) T d1aoya_ 11 VKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRMLTKFGA 55 (78) T ss_dssp HHHHHHHHHTCCCCSHHHHHHHHHHHTCSSCCHHHHHHHHHHHTC T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 999999998488678999999999839850109889999999298 No 161 >d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]} Probab=31.38 E-value=10 Score=15.24 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=23.0 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-.+||+..|.|++++.++.. T Consensus 12 ~~l~~~~G~~~~si~~Ia~~agvs~~~iy~~F~ 44 (73) T d1sgma1 12 SRLSQLQGYHATGLNQIVKESGAPKGSLYHFFP 44 (73) T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTT T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998492417799999986888779999859 No 162 >d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]} Probab=31.31 E-value=13 Score=14.54 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=22.0 Q ss_pred HHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH Q ss_conf 985210111--046799997433787786565 Q gi|254780805|r 145 EQLISEYGY--TQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~~--t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.|+ |-.+||++.|.|++++.++.. T Consensus 22 ~~l~~~~G~~~t~~~Ia~~agvs~~~~Y~~F~ 53 (88) T d1t33a1 22 LAQFGEYGLHATTRDIAALAGQNIAAITYYFG 53 (88) T ss_dssp HHHHHHHGGGSCHHHHHHHHTSCHHHHHHHHS T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHCCCC T ss_conf 99998754016799999883998443100198 No 163 >d1nera_ a.35.1.2 (A:) Ner {Bacteriophage mu [TaxId: 10677]} Probab=30.86 E-value=13 Score=14.49 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=28.4 Q ss_pred HCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 10221048999999985210111046799997433787786565 Q gi|254780805|r 131 QRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 131 ~R~dl~p~e~A~~~~~l~~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ...|.++-+.- ..| ..-|+|..+|++.-|.+.++++|.|. T Consensus 5 k~~dWh~adI~---AaL-~krG~sLa~lsr~~gls~stl~naL~ 44 (74) T d1nera_ 5 KARDWHRADVI---AGL-KKRKLSLSALSRQFGYAPTTLANALE 44 (74) T ss_dssp CSSSCCHHHHH---HHH-TTSSCCHHHHHHHHSCCHHHHHHTTT T ss_pred CCCCCCHHHHH---HHH-HHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 56888999999---999-99688799999990998789999983 No 164 >d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]} Probab=30.11 E-value=14 Score=14.41 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=24.4 Q ss_pred HHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011---1046799997433787786565 Q gi|254780805|r 143 GYEQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 143 ~~~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +...++.+.| .|..+||+..|.|++++.++.. T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~agvs~~~iy~~F~ 43 (69) T d2np5a1 9 ALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFS 43 (69) T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99999998491406799999883988879988883 No 165 >d2qale1 d.14.1.1 (E:78-158) Ribosomal protein S5, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=29.68 E-value=14 Score=14.36 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=39.9 Q ss_pred CEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 04620565445333575677777642100135433346411234556665431022104899999998521011104679 Q gi|254780805|r 79 LIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQNDI 158 (300) Q Consensus 79 i~Vr~~~~g~y~ii~G~rR~rAa~~~g~~~ip~iv~~~~d~~~~~~~l~EN~~R~dl~p~e~A~~~~~l~~~~~~t~~~l 158 (300) +.++|.+.| +-|++|.-=..-+..+|.+.|-+-+.-.. ||+--+.|.-.-+... .|.+++ T Consensus 16 V~l~PAp~G-tGliag~~vr~ilelaGI~Dv~~K~~GS~------------------n~~N~vkAt~~aL~~~-~t~~~i 75 (81) T d2qale1 16 VFMQPASEG-TGIIAGGAMRAVLEVAGVHNVLAKAYGST------------------NPINVVRATIDGLENM-NSPEMV 75 (81) T ss_dssp EEBCBCCTT-SCEECCHHHHHHHHHHTCCSEECEEEECC------------------CHHHHHHHHHHHHTTC-CCHHHH T ss_pred EEEEECCCC-CCCCCCHHHHHHHHHCCCCEEEEECCCCC------------------CHHHHHHHHHHHHHCC-CCHHHH T ss_conf 999978999-84134779999999829662676758999------------------7899999999999818-999999 Q ss_pred HHHHHH Q ss_conf 999743 Q gi|254780805|r 159 GSIVGK 164 (300) Q Consensus 159 A~~~G~ 164 (300) |++-|+ T Consensus 76 A~~RGk 81 (81) T d2qale1 76 AAKRGK 81 (81) T ss_dssp HHHTTC T ss_pred HHHHCC T ss_conf 998286 No 166 >d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]} Probab=29.34 E-value=14 Score=14.33 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=22.5 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+.| .|-.+||++.|.|++++.++.. T Consensus 13 ~l~~~~G~~~~ti~~Ia~~agvs~~~~Y~~F~ 44 (68) T d2d6ya1 13 AEFARHGIAGARIDRIAAEARANKQLIYAYYG 44 (68) T ss_dssp HHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998592506799999887846628988874 No 167 >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} Probab=28.90 E-value=7.7 Score=16.02 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=27.5 Q ss_pred CCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 2210489999999852---10111046799997433787786565 Q gi|254780805|r 133 KDLNPLEEALGYEQLI---SEYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 133 ~dl~p~e~A~~~~~l~---~~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+|++.+- ..+..|. ...++|+.+||+.+|.++++|++.+. T Consensus 58 ~gLt~~q~-~vL~~L~~~~~~~~lt~~eLa~~l~i~~~tvsr~l~ 101 (172) T d2fbka1 58 SGLNAAGW-DLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIV 101 (172) T ss_dssp TTCCHHHH-HHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHH T ss_pred CCCCHHHH-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 69799999-999999851899996899999997867857999999 No 168 >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Probab=28.64 E-value=15 Score=14.25 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=17.8 Q ss_pred CCEEEEEEE-CCHHHHHHHHHHHCC Q ss_conf 822899985-898999999998375 Q gi|254780805|r 272 NKGQFCIKY-ETNEQLKIICSLLGE 295 (300) Q Consensus 272 ~kGkI~I~f-~s~eeLe~Il~kL~~ 295 (300) ..|-|.|.| .+.+.++..+++|++ T Consensus 390 ~~~~iRis~~~~~~~l~~a~~rl~~ 414 (418) T d1w7la_ 390 FDHYIRFCFVKDEATLQAMDEKLRK 414 (418) T ss_dssp SCSEEEEECCCCHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 7997999973899999999999999 No 169 >d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]} Probab=28.47 E-value=15 Score=14.23 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.5 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+. +.|-++||+..|.|++++.++.. T Consensus 16 ~l~~~~G~~~~si~~Ia~~agvs~~~~y~~F~ 47 (71) T d1ui5a1 16 DLFDRRGYESTTLSEIVAHAGVTKGALYFHFA 47 (71) T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998594626799999987948769998982 No 170 >d2ao9a1 a.4.1.17 (A:13-132) Phage protein BC1890 {Bacillus cereus [TaxId: 1396]} Probab=27.94 E-value=15 Score=14.17 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=27.3 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 852101---1104679999743378778656565435899998764210 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEI 191 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~LrLl~L~~~i~~~l~~~~i 191 (300) .++.+. .-||+++|+.+|.||.+..+--.=.+---+-+..|.+.-+ T Consensus 27 e~~~~~~~ekktqeqiAeelGisr~tLyrWrt~dk~FI~y~nevAd~~l 75 (120) T d2ao9a1 27 ELMESNNEEKRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADSFL 75 (120) T ss_dssp HHCC---CCCCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_pred HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 0011000334149999999580188898876066269999999999999 No 171 >d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Probab=27.59 E-value=15 Score=14.13 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=24.7 Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998521011--104679999743378778656565 Q gi|254780805|r 143 GYEQLISEYG--YTQNDIGSIVGKSRSHVANILRIL 176 (300) Q Consensus 143 ~~~~l~~~~~--~t~~~lA~~~G~s~s~V~~~LrLl 176 (300) ++.+|..++| -|.+|||+.+|.+...+...+... T Consensus 15 a~~~L~~~lGR~Pt~~EiA~~lg~s~~e~~~~l~~~ 50 (77) T d1rp3a1 15 VVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKI 50 (77) T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 999999998869799999999794999999999997 No 172 >d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=27.52 E-value=15 Score=14.12 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=19.2 Q ss_pred HHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHH Q ss_conf 9998521011-104679999743-----3787786565654 Q gi|254780805|r 143 GYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILK 177 (300) Q Consensus 143 ~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~ 177 (300) .+++++.... .||++|.+.+.. +++|||+.|+=+. T Consensus 6 ~I~~li~~~~i~tQ~eL~~~L~~~Gi~vTQaTlSRDL~eLg 46 (75) T d1b4aa1 6 KIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQ 46 (75) T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC T ss_conf 99999986897789999999998598630899997999929 No 173 >d1rr7a_ a.4.1.14 (A:) Middle operon regulator, Mor {Bacteriophage Mu [TaxId: 10677]} Probab=27.14 E-value=16 Score=14.08 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) |.+..+||.+.|.|..+|.+.++ T Consensus 66 G~n~~eLA~kY~lS~~~I~~Ii~ 88 (94) T d1rr7a_ 66 GRNVSELTTRYGVTFNTVYKAIR 88 (94) T ss_dssp SSCHHHHHHHHTCCHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99899999998977999999999 No 174 >d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]} Probab=26.90 E-value=16 Score=14.05 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=22.2 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.+. +.|-.+||++.|.|++.+.++.. T Consensus 15 ~l~~~~g~~~~si~~ia~~~gvs~~~~y~hF~ 46 (68) T d2g7la1 15 ALMRAEGLEKVTMRRLAQELDTGPASLYVYVA 46 (68) T ss_dssp HHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998490307899999997828767628775 No 175 >d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]} Probab=26.78 E-value=16 Score=14.04 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=22.4 Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 852101---11046799997433787786565 Q gi|254780805|r 146 QLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +++.+. +.|-.+||++.|.|++++.++.. T Consensus 14 ~l~~~~G~~~~t~~~Ia~~agvs~~slY~yF~ 45 (72) T d1zk8a1 14 EIADANGVQEVTLASLAQTLGVRSPSLYNHVK 45 (72) T ss_dssp HHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998697756699999995979999989883 No 176 >d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]} Probab=26.76 E-value=16 Score=14.04 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=20.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|-.+||++.|.|++++.++.. T Consensus 23 ~~t~~~Ia~~agvs~~~iy~hF~ 45 (68) T d1z0xa1 23 QLSMRKVAKQLGVQAPAIYWYFK 45 (68) T ss_dssp GCCHHHHHHHHTSCHHHHHTTCS T ss_pred CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 16799999987726568999629 No 177 >d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]} Probab=26.73 E-value=16 Score=14.03 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=22.5 Q ss_pred HHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 8521011---1046799997433787786565 Q gi|254780805|r 146 QLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 146 ~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .++.+.| .|..+||++.|.|++++.++.. T Consensus 22 ~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (81) T d1rkta1 22 TVFKRKGFELTTMKDVVEESGFSRGGVYLYFS 53 (81) T ss_dssp HHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCS T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 99998592517799999986949889988884 No 178 >d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]} Probab=25.68 E-value=16 Score=13.91 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|-.+||+..|.|++++.++.. T Consensus 24 ~~s~~~Ia~~agvs~~~iY~~F~ 46 (74) T d2g7sa1 24 SFSYADISQVVGIRNASIHHHFP 46 (74) T ss_dssp GCCHHHHHHHHCCCHHHHHHHCS T ss_pred CCCHHHHHHHHCCCCCHHHHHCC T ss_conf 06799999987818416988883 No 179 >d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Probab=24.85 E-value=17 Score=13.81 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=22.1 Q ss_pred HHHHHHHHHCC-CCHHHHHHHHHH-----HHHHHHHHHHHHH Q ss_conf 99998521011-104679999743-----3787786565654 Q gi|254780805|r 142 LGYEQLISEYG-YTQNDIGSIVGK-----SRSHVANILRILK 177 (300) Q Consensus 142 ~~~~~l~~~~~-~t~~~lA~~~G~-----s~s~V~~~LrLl~ 177 (300) ..+++++.... .||++|...+-. +++|||+.|+-+. T Consensus 7 ~~I~~li~~~~i~tQ~eL~~~L~~~G~~vTQaTlSRDL~eLg 48 (63) T d2p5ka1 7 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH 48 (63) T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHC T ss_conf 999999984897889999999998698752899887899919 No 180 >d1in0a2 d.58.49.1 (A:90-163) Hypothetical protein HI1034 {Haemophilus influenzae [TaxId: 727]} Probab=24.77 E-value=17 Score=13.80 Aligned_cols=38 Identities=8% Similarity=0.233 Sum_probs=29.5 Q ss_pred HCCEEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCCC Q ss_conf 3987999717982289998589899999999837564569 Q gi|254780805|r 261 VGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGENDFEY 300 (300) Q Consensus 261 lGtkV~I~~~~~kGkI~I~f~s~eeLe~Il~kL~~~~~~~ 300 (300) .+.||...-.+. .|.+.-++.|+|..++..|++.||++ T Consensus 28 ~k~KVq~~IQGd--~vRVtgKkrDdLQ~vi~llk~~d~~~ 65 (74) T d1in0a2 28 SKIKVQTQIQGE--QVRVTGKSRDDLQAVIQLVKSAELGQ 65 (74) T ss_dssp HTCSEEEEEETT--EEEEEESCHHHHHHHHHHHHHSCCSS T ss_pred CCCCCEEEECCC--EEEECCCCHHHHHHHHHHHHHCCCCC T ss_conf 388415997582--77863788799999999998327699 No 181 >d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]} Probab=24.65 E-value=17 Score=13.79 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=25.4 Q ss_pred HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998521011-----1046799997433787786565654 Q gi|254780805|r 142 LGYEQLISEYG-----YTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 142 ~~~~~l~~~~~-----~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .+.+.+.++.+ +....+|+++|..||.|-|.||=+. T Consensus 19 eAv~hIf~eL~g~EGllvASkiADrvgiTRSVIVNALRK~E 59 (91) T d2b0la1 19 EAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLE 59 (91) T ss_dssp HHHHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCEEEEHHHHHHHCCHHHHHHHHHHHHH T ss_conf 99999999738976547415554651853999999998764 No 182 >d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]} Probab=24.23 E-value=18 Score=13.74 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|-.+||++.|.|++++.++.. T Consensus 20 ~~ti~~Ia~~agvs~~~~Y~~F~ 42 (69) T d2i10a1 20 GTSITDLTKALGINPPSLYAAFG 42 (69) T ss_dssp TCCHHHHHHHHTCCHHHHHHHHC T ss_pred CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 27799999986878629988885 No 183 >d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]} Probab=24.01 E-value=18 Score=13.71 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.3 Q ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99852101---11046799997433787786565 Q gi|254780805|r 144 YEQLISEY---GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 144 ~~~l~~~~---~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+++.+. +.|..+||+..|.|++++.++.. T Consensus 13 a~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 46 (74) T d1v7ba1 13 AIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFP 46 (74) T ss_dssp HHHHHHHSCSTTCCHHHHHHHHCSCHHHHHHHCS T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCC T ss_conf 9999998595635799999884969223855079 No 184 >d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]} Probab=24.01 E-value=18 Score=13.71 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=28.3 Q ss_pred HHHHHHHHHHHCCEEEEECCCCCEEEEE-EECCHHHHHHHHHHHCCCCC Q ss_conf 9999999997398799971798228999-85898999999998375645 Q gi|254780805|r 251 TDLEKKISSKVGLNISIKHRNNKGQFCI-KYETNEQLKIICSLLGENDF 298 (300) Q Consensus 251 ~~le~~L~~~lGtkV~I~~~~~kGkI~I-~f~s~eeLe~Il~kL~~~~~ 298 (300) ..+..+|. ..|..+.|..++.-.+|.+ +|.+.++.+.++++|.+..+ T Consensus 20 ~~l~~~L~-~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~G~ 67 (77) T d1utaa_ 20 ETVRAQLA-FEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGH 67 (77) T ss_dssp HHHHHHHH-HHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCC T ss_pred HHHHHHHH-HCCCCCEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC T ss_conf 99999998-6588516537996899997784999999999999998699 No 185 >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Probab=23.88 E-value=18 Score=13.70 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=17.7 Q ss_pred CCEEEEEEE-CCHHHHHHHHHHHCC Q ss_conf 822899985-898999999998375 Q gi|254780805|r 272 NKGQFCIKY-ETNEQLKIICSLLGE 295 (300) Q Consensus 272 ~kGkI~I~f-~s~eeLe~Il~kL~~ 295 (300) ..|-|.|.| .+.|+++.-+++|.+ T Consensus 342 ~~~~iRis~~~~~e~i~~ai~rL~~ 366 (368) T d1v2da_ 342 PKDLFRFAFCKTEEELHLALERLGR 366 (368) T ss_dssp CTTEEEEECCSCHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 8998999964999999999999998 No 186 >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Probab=23.78 E-value=18 Score=13.68 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=22.6 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10111046799997433787786565654 Q gi|254780805|r 149 SEYGYTQNDIGSIVGKSRSHVANILRILK 177 (300) Q Consensus 149 ~~~~~t~~~lA~~~G~s~s~V~~~LrLl~ 177 (300) .....|.+++|+++|.+...+.+.||.+. T Consensus 31 ~~gp~s~~eLA~~~g~~~~~l~rlLr~l~ 59 (85) T d1tw3a1 31 LAGARTVKALAARTDTRPEALLRLIRHLV 59 (85) T ss_dssp HTTCCBHHHHHHHHTCCHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 54999999999884929269999999998 No 187 >d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]} Probab=23.75 E-value=12 Score=14.88 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=22.9 Q ss_pred HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521011---1046799997433787786565 Q gi|254780805|r 145 EQLISEYG---YTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 145 ~~l~~~~~---~t~~~lA~~~G~s~s~V~~~Lr 174 (300) .+++.+.| .|-++||+..|.|++++.++.. T Consensus 6 ~~l~~~~G~~~~s~~~IA~~agvs~~~ly~~F~ 38 (65) T d2np3a1 6 RVCFAERGFDATSLRRIAETAGVDQSLVHHFYG 38 (65) T ss_dssp HHHC---------------------------CC T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCC T ss_conf 999998790407799999987868879998887 No 188 >d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]} Probab=22.80 E-value=19 Score=13.56 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.2 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 11046799997433787786565 Q gi|254780805|r 152 GYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 152 ~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) +.|-.+||++.|.|++++.++.. T Consensus 19 ~~s~~~Ia~~agvs~~tiy~~F~ 41 (62) T d2vkva1 19 GLTTRKLAQKLGVEQPTLYWHVK 41 (62) T ss_dssp HCCHHHHHHHHTSCHHHHHHHSC T ss_pred CCCHHHHHHHHCCCHHHHHHHCC T ss_conf 17899999880988889998887 No 189 >d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]} Probab=22.12 E-value=19 Score=13.48 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=21.2 Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 0111046799997433787786565 Q gi|254780805|r 150 EYGYTQNDIGSIVGKSRSHVANILR 174 (300) Q Consensus 150 ~~~~t~~~lA~~~G~s~s~V~~~Lr 174 (300) ..+.|-.+||+..|.|++++.++.. T Consensus 17 ~G~~ti~~Ia~~agvs~~~iY~~F~ 41 (65) T d2g7ga1 17 DGDFRMPDLARHLNVQVSSIYHHAK 41 (65) T ss_dssp HSSCCHHHHHHHTTSCHHHHHTTSC T ss_pred CCCCCHHHHHHHHCCCCCCHHHCCC T ss_conf 6797899999885706131311589 No 190 >d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]} Probab=21.69 E-value=20 Score=13.42 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.4 Q ss_pred HHCCCCHHHHHHHHH-HHHHHHHHHHH Q ss_conf 101110467999974-33787786565 Q gi|254780805|r 149 SEYGYTQNDIGSIVG-KSRSHVANILR 174 (300) Q Consensus 149 ~~~~~t~~~lA~~~G-~s~s~V~~~Lr 174 (300) +..++|-.+||..|| ++.++|...++ T Consensus 56 ~~t~~sl~~IG~~fg~rdHsTV~~a~k 82 (110) T d1l8qa1 56 KVCSASLIEIARAFKRKDHTTVIHAIR 82 (110) T ss_dssp HHHCCCHHHHHHHSSCCCSTHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHH T ss_conf 870899999999958997109999999 No 191 >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Probab=21.46 E-value=20 Score=13.39 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=14.1 Q ss_pred CEEEEEEEC-CHHHHHHHHHHHCC Q ss_conf 228999858-98999999998375 Q gi|254780805|r 273 KGQFCIKYE-TNEQLKIICSLLGE 295 (300) Q Consensus 273 kGkI~I~f~-s~eeLe~Il~kL~~ 295 (300) .+-+.|.|. +.|+|+.-++.|.+ T Consensus 359 ~~~iRis~~~~~~~l~~a~~~L~~ 382 (389) T d2gb3a1 359 KKEIRIACVLEKDLLSRAIDVLME 382 (389) T ss_dssp SSEEEEECCSCHHHHHHHHHHHHH T ss_pred CCEEEEEECCCHHHHHHHHHHHHH T ss_conf 998999972899999999999999 No 192 >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Probab=20.36 E-value=21 Score=13.25 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=15.1 Q ss_pred CEEEEEEEC--CHHHHHHHHHHHCC Q ss_conf 228999858--98999999998375 Q gi|254780805|r 273 KGQFCIKYE--TNEQLKIICSLLGE 295 (300) Q Consensus 273 kGkI~I~f~--s~eeLe~Il~kL~~ 295 (300) .|-|.|.|. +.++++.-+++|.+ T Consensus 384 ~~~iRls~~~~~~e~l~~a~~rL~~ 408 (420) T d1vp4a_ 384 SPSMRLSFCLPPDEKIVEGIKRLRE 408 (420) T ss_dssp CSEEEEECSSSCHHHHHHHHHHHHH T ss_pred CCEEEEEECCCCHHHHHHHHHHHHH T ss_conf 9979999584999999999999999 Done!