RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780805|ref|YP_003065218.1| chromosome partitioning
protein B [Candidatus Liberibacter asiaticus str. psy62]
(300 letters)
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein,
chromosome segregation, DNA-binding, helix-turn-helix;
2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Length = 230
Score = 159 bits (404), Expect = 6e-40
Identities = 91/234 (38%), Positives = 139/234 (59%), Gaps = 18/234 (7%)
Query: 7 KRRLGRGLAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDL 66
LGRGL AL+ + + + + SI PNP PR F E L++L
Sbjct: 5 PSGLGRGLEALLPKTGAGVVR--------------LPLASIRPNPRQPRKRFAEESLKEL 50
Query: 67 CQSIKSHGIIQPLIVRAIDNGLYKIIAGERRFRAAKMASLSEVPVIIRNVDNKSSLEIAI 126
SI+ G++QPL+VR +G Y+++AGERR+RAA MA L EVP +++++ ++ +LE+A+
Sbjct: 51 ADSIREKGLLQPLLVRPQGDG-YELVAGERRYRAALMAGLQEVPAVVKDLTDREALELAL 109
Query: 127 VENVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI 186
VEN+QR+DL+P+EEA GY+ + E G TQ ++ VGK+RS VAN LR+L+LP E +
Sbjct: 110 VENLQREDLSPVEEARGYQA-LLEMGLTQEEVARRVGKARSTVANALRLLQLPPEALEAL 168
Query: 187 RKEEISLGHARTLVSTSDP--LSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKK 238
+ EI+ GHAR L+ L + I+ K +SVR E L + ++ +
Sbjct: 169 ERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAE 222
>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl
lysine, structural genomics, PSI, protein structure
initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP:
d.268.1.2
Length = 242
Score = 131 bits (330), Expect = 2e-31
Identities = 33/222 (14%), Positives = 69/222 (31%), Gaps = 30/222 (13%)
Query: 42 ISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAI--DNGLYKIIAGERRFR 99
+ I + P LED +S+ GI ++ A Y I+ G R+
Sbjct: 16 VEYVFIELDKMXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWA 75
Query: 100 AAKMASLSEVPVIIRNVDNKS-----------SLEIAIVENVQRKDLNPLEEALGYE--- 145
+ P +I + ++ ++E ++ + L +E+ E
Sbjct: 76 GLQKLGAKRAPSVILDYFDEGVKVYTWYPAFXGDVNXVIERLKAEGLEVIEDEKAEEXAE 135
Query: 146 ------QLISEYGYT-------QNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEIS 192
LI E + Q + ++ + L L + + K EI
Sbjct: 136 XGEIAFALIGEKSFAIPGGLEEQXKVSKVLDEMDQAXEIELVYYGLKEDAKADMEKGEID 195
Query: 193 LGHARTLVSTSDPLSLA-QVIVSKKMSVRDTEELVQEQDNKK 233
R + + + L + V + R + ++ + K
Sbjct: 196 YVFIRXAPTKEEVMELVKRGEVFSPXTTRHVLPFIPDKIDVK 237
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 128 bits (323), Expect = 1e-30
Identities = 36/181 (19%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 97 RFRAAKMASLSEVPVIIRNVDNKSSLEIAIVENVQRKDLNPLEEALGYEQLISEYGYTQN 156
R+R +K A +P I N + ++EN+QR +L P E A + +++ G +
Sbjct: 1 RYRGSKWAGKKSIPAFIDNDY---NEADQVIENLQRNELTPREIADFIGRELAK-GKKKG 56
Query: 157 DIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTS---DPLSLAQVIV 213
DI +GKS + + + +L LP + + + + T+ P + +
Sbjct: 57 DIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTVVNELVTAFKKRPEEVEAWLD 116
Query: 214 SKKMSV-RDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNN 272
+ R T +L++E ++K + + TD E+ + G + ++
Sbjct: 117 DDTQEITRGTVKLLREFLDEKGRDPNT----VDAFNGQTDAERDAEAGDGQDGEDGDQDG 172
Query: 273 K 273
K
Sbjct: 173 K 173
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding
protein- complex; HET: DNA; 2.86A {Escherichia coli}
PDB: 3mkw_B* 3mkz_A*
Length = 189
Score = 114 bits (286), Expect = 3e-26
Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 5/167 (2%)
Query: 131 QRKDLNPLEEALGYEQLI-SEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKE 189
+ + E Y + +E+ + + SR + + KLP SV +
Sbjct: 20 HYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHP 79
Query: 190 -EISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEK 248
E+S L + + + ++ E E + +
Sbjct: 80 GELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFE---ADEVITLLTSVLKTSSA 136
Query: 249 YLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGE 295
T L + G + K E ++ I ++L E
Sbjct: 137 SRTSLSSRHQFAPGATVLYKGDKMVLNLDRSRVPTECIEKIEAILKE 183
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET:
CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Length = 192
Score = 83.2 bits (205), Expect = 7e-17
Identities = 30/185 (16%), Positives = 67/185 (36%), Gaps = 17/185 (9%)
Query: 129 NVQRKDLNPLEEALGYEQLISEYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMI-R 187
+VQ + + E + G +Q DI + G S++ V L+ P + +
Sbjct: 1 DVQTALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPV 60
Query: 188 KEEISLGHARTLVSTSDPLS--------LAQVIVSKKMSVRDTEELVQEQDNKK--EKRK 237
+ E++ +TL + D + L Q I + + E+ +++ K
Sbjct: 61 QSELTFSDYKTLCAVGDEMGNKNLEFDQLIQNISPEINDILSINEMAEDEVKNKILRLIT 120
Query: 238 KIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKY-----ETNEQL-KIICS 291
K +K + ++ + + R F ++ E E+L ++I
Sbjct: 121 KEASLLTDKGSKDKSVVTELWKFEDKDRFARKRVKGRAFSYEFNRLSKELQEELDRMIGH 180
Query: 292 LLGEN 296
+L ++
Sbjct: 181 ILRKS 185
>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens}
SCOP: d.268.1.4 PDB: 2b6f_A*
Length = 121
Score = 63.4 bits (154), Expect = 7e-11
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 42 ISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIV-----RAIDNGLYKIIAGER 96
+ + ++ P + ++ L +I+ P I A + G
Sbjct: 28 VPLSVLI-RPLPSV--LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCH 84
Query: 97 RFRAAKMASLSEVPVIIRNVDNKSSLEI---AIVENVQ 131
R+ A + +P + S L + A ++Q
Sbjct: 85 RYAAYQQLQRETIPAKLVQST-LSDLRVYLGASTPDLQ 121
>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP,
oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4
PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*
Length = 110
Score = 58.4 bits (141), Expect = 2e-09
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 42 ISIHSIVPNPHNPRNYFESEGLEDLCQSIKSHGIIQPLIVR-----AIDNGLYKIIAGER 96
+ + ++ P + ++ L +I+ P I A + G
Sbjct: 17 VPLSVLI-RPLPSV--LDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCH 73
Query: 97 RFRAAKMASLSEVPVIIRNVDNK 119
R+ A + +P +
Sbjct: 74 RYAAYQQLQRETIPAKLVQSTLS 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 47.2 bits (112), Expect = 5e-06
Identities = 67/410 (16%), Positives = 119/410 (29%), Gaps = 182/410 (44%)
Query: 11 GRGLAALIGEVNQSIDSPEKKTETIPES--QDCISIHSIVPNPH---------------- 52
G + AL ++ Q D+ KT+ + ++ I
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV 157
Query: 53 -------NPRNYFE--------------------SEGLEDLCQS------IKSHG--IIQ 77
N +YFE +E L +L ++ + + G I++
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 78 ---------------------PLIVRAIDNGL-----YKIIA-------GE--RRFRAAK 102
PLI G+ Y + A GE + A
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLI------GVIQLAHYVVTAKLLGFTPGELRSYLKGA- 270
Query: 103 MASLSE---VPVIIRNVDN--------KSSLEI--AI-VENVQ---RKDLNP--LEEALG 143
S+ V I D+ + ++ + I V + L P LE++L
Sbjct: 271 -TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL- 328
Query: 144 YEQLISEYGYTQNDIG------SIVGKSRSHVANILRILK--LPSSVREMIRKEEISL-- 193
+N+ G SI ++ V + + LP+ ++ EISL
Sbjct: 329 -----------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-----KQVEISLVN 372
Query: 194 GHARTLVSTSDPLSLA--QVIVSKKMSVRDTEELVQEQDNKK--EKRKKIFEG------- 242
G A+ LV + P SL + + K + L Q ++ +RK F
Sbjct: 373 G-AKNLVVSGPPQSLYGLNLTLRK---AKAPSGLDQ---SRIPFSERKLKFSNRFLPVAS 425
Query: 243 ---SREKEKYLTDLEKKISSKVGL-NISIKHRNNKGQFCIKYETNEQLKI 288
S L I+ + N+S + ++I
Sbjct: 426 PFHS----HLLVPASDLINKDLVKNNVSFN--------------AKDIQI 457
Score = 34.9 bits (80), Expect = 0.023
Identities = 29/200 (14%), Positives = 59/200 (29%), Gaps = 56/200 (28%)
Query: 72 SHGIIQPLIVRAIDNGLYKIIAGERRFRAAKM-----ASLSEV-PVIIRNVDNKSSLEIA 125
SHG ++ V + + F A+++ L E + + + E+
Sbjct: 12 SHGSLE--HVLLVPTASF--------FIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 126 ------IVENVQRKDLNPLEEALGYEQLI-----SEYGYTQNDIGSIVGKSRSHVANILR 174
+ V+ + ++ L L + Y NDI ++ A +L+
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVL---NLCLTEFENCY-LEGNDIHALA-------AKLLQ 110
Query: 175 ILKLP-SSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQDNKK 233
+E+I+ + + P K S L +
Sbjct: 111 ENDTTLVKTKELIKN------YITARIMAKRPFD--------KKS---NSALFRAVGEGN 153
Query: 234 EKRKKIFEGSREKEKYLTDL 253
+ IF G + Y +L
Sbjct: 154 AQLVAIFGGQGNTDDYFEEL 173
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.9 bits (79), Expect = 0.021
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 32/97 (32%)
Query: 169 VANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQE 228
+A R+ + P S+R+ R+E+ K++ D V E
Sbjct: 74 IAQADRLTQEPESIRKW-REEQ-----------------------RKRLQELDAASKVME 109
Query: 229 QDNKKEKRKKIFE--GSREKEKYLTDLEK-KISSKVG 262
Q+ + EK KK E R+ E+ +EK KI++++
Sbjct: 110 QEWR-EKAKKDLEEWNQRQSEQ----VEKNKINNRIA 141
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme,
ATP-binding, DNA-binding, H nucleotide-binding, serine
protease, stress respo; 2.60A {Escherichia coli}
Length = 252
Score = 33.1 bits (75), Expect = 0.081
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 198 TLVSTSDPLSLAQVIVSK-KMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKK 256
+L S DP LA I + + + D + +++ D + R + E E L +EK+
Sbjct: 162 SLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNE--RLEYLMAMMESEIDLLQVEKR 219
Query: 257 ISSKVGLNISIKHRNNKGQFCIKYETNEQLKIICSLLGEND 297
I ++V + R +Y NEQ+K I LGE D
Sbjct: 220 IRNRVKKQMEKSQR--------EYYLNEQMKAIQKELGEMD 252
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 29.1 bits (65), Expect = 1.2
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 47 IVPNPHNPRNY-FESEGLEDLCQSIKSHGIIQ 77
I+ P NP E + E + K + ++
Sbjct: 177 ILGFPSNPTAQCVELDFFERVVALAKQYDVMV 208
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 28.9 bits (63), Expect = 1.4
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 14 LAALIGEVNQSIDSPEKKTETIPESQDCISIHSIVPNPHNPRNYFESEGLEDLCQSIKSH 73
LA + + P + P+S+ IS +V + + E E ++ + K+
Sbjct: 275 LAKFLSKRYPQYKVPTDFGDFPPKSKLIISSEKLVKEGFSFKYGIE-EIYDESVEYFKAK 333
Query: 74 GIIQ 77
G++Q
Sbjct: 334 GLLQ 337
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI,
protein structure initiative; HET: APR; 1.60A
{Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Length = 386
Score = 28.4 bits (62), Expect = 1.9
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 52 HNPRNYFESEGLEDLCQSIKSHGIIQPLIVRAIDNGLYK 90
N +F + L +K G + LIV D L +
Sbjct: 8 LNETAWFGRGAVGALTDEVKRRGYQKALIV--TDKTLVQ 44
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, domain, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.60A {Porphyromonas gingivalis}
Length = 122
Score = 28.0 bits (63), Expect = 2.5
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 111 VIIRNVDNKSSLEIAIVENVQRK-DLNPLEEALG--YEQLISE 150
+ +R + NKS ++++IV+ + RK L+ + + G + +L+SE
Sbjct: 10 MRVRTLANKSKMKVSIVQQIDRKVALDDIAVSHGLDFPELLSE 52
>1alq_A CP254 beta-lactamase; hydrolase, circular permuted, antibiotic
resistance; 1.80A {Staphylococcus aureus} SCOP: e.3.1.1
Length = 266
Score = 27.8 bits (61), Expect = 3.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 203 SDPLSLAQVIVSKKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVG 262
S+P+ L S + ++L+ E K K+ GS+ K L DLEKK ++ +G
Sbjct: 4 SEPIVLVIFTNKDNKSDKPNDKLISE--TAKSVMKEFAAGSKNAAKELNDLEKKYNAHIG 61
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 27.6 bits (60), Expect = 3.3
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 104 ASLSEVPVIIRNVDNKSS---LEIA--IVENVQRKDLNPLEEALGYEQLISEYGYTQNDI 158
A + + VI + K + +A +V+N NP+ E+L+ E+G + +
Sbjct: 220 AEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLVIPNPITM-DELEELLMEFGIMEVED 278
Query: 159 GSIVGKS 165
SIVGK+
Sbjct: 279 ESIVGKT 285
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 27.5 bits (60), Expect = 3.6
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 99 RAAKMASLSEVPVIIRNVDNKSSLEIAI 126
A + + +P+++ N+ ++ A+
Sbjct: 243 TAFSLCMDNGMPILVFNLLTDGNIARAV 270
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics
consortium, reduced- dimensionality PSI; NMR
{Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Length = 122
Score = 27.4 bits (61), Expect = 4.2
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 150 EYGYTQNDIGSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTS 203
E G++Q I + +R +V+ I R E I K +L ++L S
Sbjct: 3 ERGWSQKKIARELKTTRQNVSAIER------KAMENIEKSRNTLDFVKSLKSPV 50
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 27.0 bits (59), Expect = 5.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 47 IVPNPHNPR-NYFESEGLEDLCQSIKSHGII 76
+V +P+NP + E LE L + H
Sbjct: 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFY 199
>2z6f_A Iron-regulated surface determinant protein H; IGG-like fold, cell
WALL, peptidoglycan-anchor, secreted, heme binding
protein; HET: HEM; 1.90A {Staphylococcus aureus} PDB:
2e7d_A*
Length = 131
Score = 26.7 bits (59), Expect = 5.8
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 215 KKMSVRDTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNNKG 274
K + V +D K R IF + ++ V + ++ +
Sbjct: 62 KDLIVEGKRVTTVSKDPKNNSRTLIFP--------YIPDKAVYNAIVKVVVANIGYEGQY 113
Query: 275 QFCIKYETNE 284
I +
Sbjct: 114 HVRIINQDIN 123
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein
structure initiativ midwest center for structural
genomics; 2.97A {Streptomyces avermitilis}
Length = 250
Score = 26.7 bits (58), Expect = 6.8
Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 198 TLVSTSDPLSLAQVI--VSKKMSVR-DTEELVQEQDNKKEKRKKIFEGSREKEKYLTDLE 254
+ +P + ++ + + VR EL ++ + ++ E +Y+ LE
Sbjct: 185 YVSQPPNPKATLALLNRLEDLIDVRIPLGELPEDARAWQVGVDQLAAEDSEVAEYVQSLE 244
Query: 255 K 255
+
Sbjct: 245 E 245
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3
PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Length = 247
Score = 26.5 bits (57), Expect = 6.9
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 99 RAAKMASLSEVPVIIRNVDNKSSLEIAI 126
A +A +P+ + N+ +L +
Sbjct: 202 SAFTLARDHGMPIRVFNMGKPGALRQVV 229
>3cnf_A VP1; cytoplasmic polyhedrosis virus, capsid protein, turret
protein, polyhedrin-binding domain, guanylyltransferase
domain; 3.88A {Bombyx mori cypovirus 1}
Length = 1333
Score = 26.5 bits (58), Expect = 7.1
Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 13/63 (20%)
Query: 227 QEQDNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQL 286
+ N +EK K+ E + + E + + + NE
Sbjct: 8 SNKRNNEEKHKQ-----PEIDSSANNGEGTSGT--------RAQTVGDTATEAGVRNETE 54
Query: 287 KII 289
Sbjct: 55 AGA 57
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 26.6 bits (58), Expect = 7.3
Identities = 8/116 (6%), Positives = 38/116 (32%), Gaps = 1/116 (0%)
Query: 170 ANILRILKLPSSVREMIRKEEISLGHARTLVSTSDPLSLAQVIVSKKMSVRDTEELVQEQ 229
++ I+ +R++ + SL + V+ + + S+ + L
Sbjct: 67 KDLPGIISTWQELRQLREQIR-SLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARG 125
Query: 230 DNKKEKRKKIFEGSREKEKYLTDLEKKISSKVGLNISIKHRNNKGQFCIKYETNEQ 285
+++ ++ + E+ ++ ++ ++ + + + +
Sbjct: 126 REIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVGDESQARVLHVVGDKPAF 181
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein
structure initiative, NYSGXRC, PYRH, putative uridylate
kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP:
c.73.1.3
Length = 252
Score = 26.5 bits (57), Expect = 8.1
Identities = 2/28 (7%), Positives = 17/28 (60%)
Query: 99 RAAKMASLSEVPVIIRNVDNKSSLEIAI 126
A+ ++ +++ +++ N++ +++ +
Sbjct: 202 TASTLSMDNDIDLVVFNMNEAGNIQRVV 229
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 250
Score = 26.2 bits (57), Expect = 9.1
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 159 GSIVGKSRSHVANILRILKLPSSVREMIRKEEISLGHARTLVSTSDP 205
I+G+ S +A +R L S + + + +A + +
Sbjct: 121 DLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKK 167
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
jejuni} SCOP: c.73.1.3
Length = 251
Score = 26.2 bits (56), Expect = 9.1
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 99 RAAKMASLSEVPVIIRNVDNKSSLEIAIVEN 129
+AAK + + + + S + ++E+
Sbjct: 212 KAAKFLLEHNKKMFLASGFDLSVAKTFLLED 242
>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed
mutagenesis, structure comparison, zinc, hydrolase;
1.40A {Homo sapiens} SCOP: c.56.5.4
Length = 198
Score = 26.2 bits (57), Expect = 9.3
Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 26 DSPEKKTETIPESQDCISIHSIVPNPHNPR------NYFESEGLE 64
PE++ ++ + + I ++ P P GL
Sbjct: 4 KGPEEEHPSVTLFRQYLRIRTVQPKPDYGAAVAFFEETARQLGLG 48
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.313 0.132 0.356
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,426,901
Number of extensions: 113297
Number of successful extensions: 424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 65
Length of query: 300
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 208
Effective length of database: 3,462,782
Effective search space: 720258656
Effective search space used: 720258656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.9 bits)