HHsearch alignment for GI: 254780806 and conserved domain: COG0455
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].
Probab=100.00 E-value=4.8e-41 Score=259.12 Aligned_cols=236 Identities=26% Similarity=0.378 Sum_probs=183.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHH-HHHHHCCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 874999980889888899999999-999987995999987877-680112124633345411676302577121024444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLS-TALAAIGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA-~~la~~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~--~~~l~dvL~~~~~~~Di~~~~~ 78 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESK--PTTLHDVLAGEASIEDIIYETP 78 (262)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCC--CCCHHHHHHCCCCHHHEEEECC
T ss_conf 97899998458875689899869999996489769999658888728888588888--5509999707787768023157
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 44200014887457750001232222102333224765102782033101333222210112331001111123113788
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEG 162 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~ 162 (265)
T Consensus 79 ~~gl~vipg~~~~~~~~~~---~~~---~~~~~~-~~l~~~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~ 151 (262)
T COG0455 79 QDGLYVLPGGSGLEDLAKL---DPE---DLEDVI-KELEELYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITD 151 (262)
T ss_pred CCCEEEEECCCCHHHHHHC---CHH---HHHHHH-HHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf 6898996078876888616---988---899999-998752999999689996688899987368179992798520899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCC--CCCCEEECCCHHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHCCCCEEEECC
Q ss_conf 87533577765543202677431--00202312531001126899988-0852015626786889877737985799979
Q gi|254780806|r 163 LSQLLETVEEVRRTVNSALDIQG--IILTMFDSRNSLSQQVVSDVRKN-LGGKVYNTVIPRNVRISEAPSYGKPAIIYDL 239 (265)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~~~~--iv~N~~~~~~~~~~~~~~~l~~~-~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p 239 (265)
T Consensus 152 A~~~i~~~~~~~~------~~~~~~vV~N~v~~~~-e~~~~~~~~~~~~~~~~~~-~~i~~~~~v~~a~~~g~p~~~~~p 223 (262)
T COG0455 152 AYKTIKILSKLGL------DLLGRRVVLNRVRSTK-EGVDVAALLIQVVKQVPVL-QVIPFDPEVRRALAEGKPIVLYSP 223 (262)
T ss_pred HHHHHHHHHHCCC------CCCCCEEEEEECCCCC-CHHHHHHHHHHHHHHCCCE-EEECCCHHHHHHHHCCCCEEEECC
T ss_conf 9999999997387------6433158997036666-5467899999999707743-471567578998624986797288
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999999
Q gi|254780806|r 240 KCAGSQAYLKLASELIQQ 257 (265)
Q Consensus 240 ~s~~a~~~~~la~el~~~ 257 (265)
T Consensus 224 ~s~as~ai~~lA~~l~~~ 241 (262)
T COG0455 224 NSKASQAIKELAAKLAGL 241 (262)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 978999999999998605