HHsearch alignment for GI: 254780806 and conserved domain: COG0552
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.28 E-value=1.9e-06 Score=57.12 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=87.7
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
T Consensus 136 ~~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi----E----------------QL~~---w~e 191 (340)
T COG0552 136 EKKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI----E----------------QLEV---WGE 191 (340)
T ss_pred CCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H----------------HHHH---HHH
T ss_conf 8986799999-34888637179999999997898699982334789999----9----------------9999---999
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCHHHH------------HHH
Q ss_conf 4420001488745775000123222210233322476510278203310133322--22101123------------310
Q gi|254780806|r 83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL--LTMNAMAA------------ADS 148 (265)
Q Consensus 83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~--~~~~al~a------------ad~ 148 (265)
T Consensus 192 r~gv~vI~~~---~--------G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e 260 (340)
T COG0552 192 RLGVPVISGK---E--------GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHE 260 (340)
T ss_pred HHCCEEECCC---C--------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 9599278259---9--------9980899999999999769999999675544573668999999999846456899842
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 01111123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 149 ILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 149 viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
T Consensus 261 ~llvlDAt----tG----qnal~QAk-~F~eav~l~GiIlTKlDgtAKGG-~-il~I~~~l~~PI 314 (340)
T COG0552 261 ILLVLDAT----TG----QNALSQAK-IFNEAVGLDGIILTKLDGTAKGG-I-ILSIAYELGIPI 314 (340)
T ss_pred EEEEEECC----CC----HHHHHHHH-HHHHHCCCCEEEEEECCCCCCCC-E-EEEHHHHHCCCE
T ss_conf 89997756----47----56899999-99875288669997024677762-4-350888869997