HHsearch alignment for GI: 254780806 and conserved domain: COG0552

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.28  E-value=1.9e-06  Score=57.12  Aligned_cols=165  Identities=24%  Similarity=0.302  Sum_probs=87.7

Q ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf             76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r    3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA   82 (265)
Q Consensus         3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~   82 (265)
T Consensus       136 ~~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi----E----------------QL~~---w~e  191 (340)
T COG0552         136 EKKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI----E----------------QLEV---WGE  191 (340)
T ss_pred             CCCCEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H----------------HHHH---HHH
T ss_conf             8986799999-34888637179999999997898699982334789999----9----------------9999---999


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCHHHH------------HHH
Q ss_conf             4420001488745775000123222210233322476510278203310133322--22101123------------310
Q gi|254780806|r   83 IPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNL--LTMNAMAA------------ADS  148 (265)
Q Consensus        83 ~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~--~~~~al~a------------ad~  148 (265)
T Consensus       192 r~gv~vI~~~---~--------G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e  260 (340)
T COG0552         192 RLGVPVISGK---E--------GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHE  260 (340)
T ss_pred             HHCCEEECCC---C--------CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf             9599278259---9--------9980899999999999769999999675544573668999999999846456899842


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf             01111123113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r  149 ILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV  213 (265)
Q Consensus       149 viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v  213 (265)
T Consensus       261 ~llvlDAt----tG----qnal~QAk-~F~eav~l~GiIlTKlDgtAKGG-~-il~I~~~l~~PI  314 (340)
T COG0552         261 ILLVLDAT----TG----QNALSQAK-IFNEAVGLDGIILTKLDGTAKGG-I-ILSIAYELGIPI  314 (340)
T ss_pred             EEEEEECC----CC----HHHHHHHH-HHHHHCCCCEEEEEECCCCCCCC-E-EEEHHHHHCCCE
T ss_conf             89997756----47----56899999-99875288669997024677762-4-350888869997