HHsearch alignment for GI: 254780806 and conserved domain: COG2874

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion].

Probab=95.95  E-value=0.035  Score=32.24  Aligned_cols=107  Identities=14%  Similarity=0.216  Sum_probs=57.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEE
Q ss_conf             99980889888899999999999987995999987877680112124633345411676302577121024444442000
Q gi|254780806|r    9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSI   88 (265)
Q Consensus         9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~i   88 (265)
T Consensus        30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsT--e~T~refi-~qm~sl~yd----------v~~~~l---~G~l~~   93 (235)
T COG2874          30 LILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVST--ELTVREFI-KQMESLSYD----------VSDFLL---SGRLLF   93 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEE--CHHHHHHH-HHHHHCCCC----------CHHHHH---CCEEEE
T ss_conf             99998889854889999999988708954899984--03599999-988863887----------168775---062689


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf             148874577500012322221023332247651027820331013332222
Q gi|254780806|r   89 IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT  139 (265)
Q Consensus        89 ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~  139 (265)
T Consensus        94 ~~~~~~~~-----~~~~~~~~~~L~~l~~~~k~~~~dViIIDS---ls~~~  136 (235)
T COG2874          94 FPVNLEPV-----NWGRRSARKLLDLLLEFIKRWEKDVIIIDS---LSAFA  136 (235)
T ss_pred             EEECCCCC-----CCCHHHHHHHHHHHHHHHHHHCCCEEEEEC---CCHHH
T ss_conf             99324542-----257377899999997557752377899953---43776