HHsearch alignment for GI: 254780806 and conserved domain: COG4963

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].
Probab=99.97  E-value=1.5e-30  Score=197.76  Aligned_cols=236  Identities=23%  Similarity=0.333  Sum_probs=191.3

Q ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCC-
Q ss_conf             687499998088988889999999999998-7995999987877-6801121246333454116763025771210244-
Q gi|254780806|r    4 KKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQ-GNASTGLGIELYDRKYSSYDLLIEEKNINQILIQ-   80 (265)
Q Consensus         4 ~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q-~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~-   80 (265)
T Consensus       102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a---~~i~~~~~~peRLDq~lld~  178 (366)
T COG4963         102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPA---FGIAEAVKQPERLDQVLLDS  178 (366)
T ss_pred             HHCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCH---HHHHHHHCCHHHHHHHHHHH
T ss_conf             103289999605886668999999999864148738999768887612343078721---45898860978760787778


Q ss_pred             ---CCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             ---44442000148874577500012322221023332247651027820331013332222101123310011111231
Q gi|254780806|r   81 ---TAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEF  157 (265)
Q Consensus        81 ---~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~  157 (265)
T Consensus       179 ~~~~~~~~l~ll~a~~~~~~~~d~~~~---~~~~L----l~~~~~~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~sl  251 (366)
T COG4963         179 LLTRLASGLKLLAAPTELAKNYDLKTG---AVERL----LDLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSL  251 (366)
T ss_pred             HHHCCCCCCEEECCCCCHHHHCCCCCC---HHHHH----HHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCH
T ss_conf             986168876330377445652153312---69999----99764028838971897662589999862884999963638


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHCCCCEEE
Q ss_conf             1378887533577765543202677431002023125310011268999880852015626786889-877737985799
Q gi|254780806|r  158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRI-SEAPSYGKPAII  236 (265)
Q Consensus       158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i-~~a~~~g~pv~~  236 (265)
T Consensus       252 ~slR~ak~lld~l~~~r~~----~~~p~lv~n~~~~~~~~~---~~dl~~~~~i~~~~-~~p~d~~~~~~A~n~g~~l~E  323 (366)
T COG4963         252 ASLRNAKELLDELKRLRPN----DPKPILVLNRVGVPKRPE---PSDLEEILGIESLL-VLPFDPALFGDAANNGRMLSE  323 (366)
T ss_pred             HHHHHHHHHHHHHHHHCCC----CCCCEEEEEECCCCCCCC---HHHHHHHHCCCHHC-CCCCCCHHHHHHHCCCCCCCC
T ss_conf             9899999999999973779----889568865227888999---99998884884001-366770544444206960222


Q ss_pred             ECCCCHHHHHHHHHHHHHHHH
Q ss_conf             979998999999999999999
Q gi|254780806|r  237 YDLKCAGSQAYLKLASELIQQ  257 (265)
Q Consensus       237 ~~p~s~~a~~~~~la~el~~~  257 (265)
T Consensus       324 ~~~~~~~~k~l~~la~~l~~~  344 (366)
T COG4963         324 VDPGSPAAKALAQLAQSLGGR  344 (366)
T ss_pred             CCCCCHHHHHHHHHHHHHCCC
T ss_conf             377875889999999985376