HHsearch alignment for GI: 254780806 and conserved domain: PRK00741
>PRK00741 prfC peptide chain release factor 3; Provisional.
Probab=98.23 E-value=3.9e-06 Score=55.30 Aligned_cols=90 Identities=20% Similarity=0.246 Sum_probs=58.4
Q ss_pred CCCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHH
Q ss_conf 027820331013332--2221011233100111112311378887-5335777655432026774310020231253100
Q gi|254780806|r 122 SDFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLS-QLLETVEEVRRTVNSALDIQGIILTMFDSRNSLS 198 (265)
Q Consensus 122 ~~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~ 198 (265)
T Consensus 77 ~~~~iNliDTPGh~DF~~e~~raL~a~D~Av~Vida~----~GVe~qTe~~w~~~~~~---~iP~i-~FINKmDR~~ad~ 148 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAA----KGVEPQTRKLMEVCRLR---DTPIF-TFINKLDRDGREP 148 (526)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECC----CCCCHHHHHHHHHHHHC---CCCEE-EEEECCCCCCCCH
T ss_conf 8989999909894677899999998737599999777----55233368999998863---99889-9996567678987
Q ss_pred HHHHHHHHHHHCCCCCCCCCC
Q ss_conf 112689998808520156267
Q gi|254780806|r 199 QQVVSDVRKNLGGKVYNTVIP 219 (265)
Q Consensus 199 ~~~~~~l~~~~~~~v~~~~Ip 219 (265)
T Consensus 149 ~~~l~ei~~~lg~~~~p~~~P 169 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWP 169 (526)
T ss_pred HHHHHHHHHHHCCCCEEEEEE
T ss_conf 898877888747873688830