HHsearch alignment for GI: 254780806 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=98.57  E-value=2.1e-07  Score=62.66  Aligned_cols=161  Identities=20%  Similarity=0.273  Sum_probs=80.9

Q ss_pred             CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCC
Q ss_conf             87499998088988889999999999998799599998787768011212463334541167630257712102444444
Q gi|254780806|r    5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIP   84 (265)
Q Consensus         5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~   84 (265)
T Consensus        96 kP~Vim~v-GlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~e-QL----------------~~la~------~~  151 (433)
T PRK00771         96 KPQTILLV-GLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYE-QL----------------KQLCE------KI  151 (433)
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HH----------------HHHHH------HC
T ss_conf             98589997-378897899999999999977994678506788368999-99----------------99998------63


Q ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--C------HHHHHHHCCCCCCCC
Q ss_conf             20001488745775000123222210233322476510278203310133322221--0------112331001111123
Q gi|254780806|r   85 NLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM--N------AMAAADSILVPLQCE  156 (265)
Q Consensus        85 ~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~--~------al~aad~viip~~p~  156 (265)
T Consensus       152 ~v~~~~~~~-----------~~dp~~i~~~a~~-~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~  218 (433)
T PRK00771        152 NVPFYGDPK-----------EKDAVKIVKEGLE-K-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDAT  218 (433)
T ss_pred             CCCCCCCCC-----------CCCHHHHHHHHHH-H-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             887317889-----------9999999999999-8-45698899977652104099999999998775797689986544


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf             113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r  157 FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV  213 (265)
Q Consensus       157 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v  213 (265)
T Consensus       219 ~-G-Q------~a~-~~a~~F~~~~~i~gvIlTKlDgdarGGa--aLSi~~~t~~PI  264 (433)
T PRK00771        219 I-G-Q------QAS-EQAKAFKEAVGIGGIIITKLDGTAKGGG--ALSAVAETGAPI  264 (433)
T ss_pred             C-C-H------HHH-HHHHHHHHHCCCCEEEEECCCCCCCCCH--HHHHHHHHCCCC
T ss_conf             2-2-6------789-9999998753887379972567887305--421898878995