HHsearch alignment for GI: 254780806 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=98.57 E-value=2.1e-07 Score=62.66 Aligned_cols=161 Identities=20% Similarity=0.273 Sum_probs=80.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCC
Q ss_conf 87499998088988889999999999998799599998787768011212463334541167630257712102444444
Q gi|254780806|r 5 KSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIP 84 (265)
Q Consensus 5 ~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~ 84 (265)
T Consensus 96 kP~Vim~v-GlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~e-QL----------------~~la~------~~ 151 (433)
T PRK00771 96 KPQTILLV-GLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYE-QL----------------KQLCE------KI 151 (433)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH-HH----------------HHHHH------HC
T ss_conf 98589997-378897899999999999977994678506788368999-99----------------99998------63
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC--C------HHHHHHHCCCCCCCC
Q ss_conf 20001488745775000123222210233322476510278203310133322221--0------112331001111123
Q gi|254780806|r 85 NLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTM--N------AMAAADSILVPLQCE 156 (265)
Q Consensus 85 ~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~--~------al~aad~viip~~p~ 156 (265)
T Consensus 152 ~v~~~~~~~-----------~~dp~~i~~~a~~-~-~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~ 218 (433)
T PRK00771 152 NVPFYGDPK-----------EKDAVKIVKEGLE-K-LKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDAT 218 (433)
T ss_pred CCCCCCCCC-----------CCCHHHHHHHHHH-H-HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 887317889-----------9999999999999-8-45698899977652104099999999998775797689986544
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC
Q ss_conf 113788875335777655432026774310020231253100112689998808520
Q gi|254780806|r 157 FFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV 213 (265)
Q Consensus 157 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v 213 (265)
T Consensus 219 ~-G-Q------~a~-~~a~~F~~~~~i~gvIlTKlDgdarGGa--aLSi~~~t~~PI 264 (433)
T PRK00771 219 I-G-Q------QAS-EQAKAFKEAVGIGGIIITKLDGTAKGGG--ALSAVAETGAPI 264 (433)
T ss_pred C-C-H------HHH-HHHHHHHHHCCCCEEEEECCCCCCCCCH--HHHHHHHHCCCC
T ss_conf 2-2-6------789-9999998753887379972567887305--421898878995