HHsearch alignment for GI: 254780806 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=96.78 E-value=0.0035 Score=38.07 Aligned_cols=100 Identities=20% Similarity=0.247 Sum_probs=57.7
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEE
Q ss_conf 99980889888899999999999987995999987877680112124633345411676302577121024444442000
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSI 88 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~i 88 (265)
T Consensus 26 ~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~--t~~~~i~-qm~s~g~----------di~~~~~---~G~l~~ 89 (230)
T PRK08533 26 IILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQL--TTTEFIK-QMMSLGY----------DINKKLI---SGKLLY 89 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC--CHHHHHH-HHHHCCC----------CCHHHHH---CCCEEE
T ss_conf 8999868998789999999999987898699999438--9999999-9998699----------8179975---796799
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 1488745775000123222210233322476510278203310
Q gi|254780806|r 89 IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDC 131 (265)
Q Consensus 89 ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~ 131 (265)
T Consensus 90 i~~~~~~~-------~~~~~~~~L~~ll~~~~~~~~dvIIIDS 125 (230)
T PRK08533 90 IPVYPLLS-------GNSEKRDFLDKLMNTRRFYEKDVVIIDS 125 (230)
T ss_pred EECCCCCC-------CHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 96134335-------4045789999997326643798999905