HHsearch alignment for GI: 254780806 and conserved domain: PRK08533

>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=96.78  E-value=0.0035  Score=38.07  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCEEE
Q ss_conf             99980889888899999999999987995999987877680112124633345411676302577121024444442000
Q gi|254780806|r    9 ITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNLSI   88 (265)
Q Consensus         9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l~i   88 (265)
T Consensus        26 ~~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~--t~~~~i~-qm~s~g~----------di~~~~~---~G~l~~   89 (230)
T PRK08533         26 IILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQL--TTTEFIK-QMMSLGY----------DINKKLI---SGKLLY   89 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECC--CHHHHHH-HHHHCCC----------CCHHHHH---CCCEEE
T ss_conf             8999868998789999999999987898699999438--9999999-9998699----------8179975---796799


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             1488745775000123222210233322476510278203310
Q gi|254780806|r   89 IPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDC  131 (265)
Q Consensus        89 ipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~  131 (265)
T Consensus        90 i~~~~~~~-------~~~~~~~~L~~ll~~~~~~~~dvIIIDS  125 (230)
T PRK08533         90 IPVYPLLS-------GNSEKRDFLDKLMNTRRFYEKDVVIIDS  125 (230)
T ss_pred             EECCCCCC-------CHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             96134335-------4045789999997326643798999905