HHsearch alignment for GI: 254780806 and conserved domain: PRK09435
>PRK09435 arginine/ornithine transport system ATPase; Provisional.
Probab=98.61 E-value=8.9e-07 Score=59.04 Aligned_cols=166 Identities=20% Similarity=0.267 Sum_probs=93.2
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCC
Q ss_conf 76874999980889888899999999999987995999987877680112124633345411676302577121024444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTA 82 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~ 82 (265)
T Consensus 46 ~g~a~~iGiT-G~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sg---------G-ai---LGDr~Rm~~~---~~ 108 (325)
T PRK09435 46 TGNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTG---------G-SI---LGDKTRMERL---SR 108 (325)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC---------C-CH---HHHHHHHHHH---CC
T ss_conf 7982599742-79998688999999999996798589999789999888---------6-10---1038888761---47
Q ss_pred CCCEEEC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHH-
Q ss_conf 4420001--4887457750001232222102333224765102782033101333222210112331001111123113-
Q gi|254780806|r 83 IPNLSII--PSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFA- 159 (265)
Q Consensus 83 ~~~l~ii--pa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s- 159 (265)
T Consensus 109 ~~~~fiRs~~srg~lgg~~~----------~~~~~~~~~~a~g~d~i~iETv-GvGQ~e~~v~~~~d~~~~~~~p~~GD~ 177 (325)
T PRK09435 109 HPNAFIRPSPSSGTLGGVAR----------KTRETMLLCEAAGFDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAGDE 177 (325)
T ss_pred CCCEEEEECCCCCCCCCCCH----------HHHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCEEEEEECCCCCCH
T ss_conf 99848840677888677335----------4999999999779998999706-777148899874266888835887608
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHH-HHHHHHHHHHH
Q ss_conf 78887533577765543202677431002023125310-01126899988
Q gi|254780806|r 160 LEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSL-SQQVVSDVRKN 208 (265)
Q Consensus 160 ~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~-~~~~~~~l~~~ 208 (265)
T Consensus 178 ~Q~~K~G---ImEia-------D--i~vVNKaDgd~~~~A~~t~~e~~~a 215 (325)
T PRK09435 178 LQGIKKG---IMELA-------D--LIVINKADGDNHTAARRAAAEYRSA 215 (325)
T ss_pred HHHHHHH---HHHHC-------C--EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8998865---77504-------2--6899776755658999999999999