HHsearch alignment for GI: 254780806 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.46 E-value=1.1e-06 Score=58.41 Aligned_cols=43 Identities=33% Similarity=0.418 Sum_probs=34.6
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC----CCCEEEEECCCC
Q ss_conf 76874999980889888899999999999987----995999987877
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAI----GENVLLIDLDPQ 46 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~----g~rVllID~D~q 46 (265)
T Consensus 171 ~~k~~vi~lV-GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~Dty 217 (388)
T PRK12723 171 NLKKRIFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 5576289998-9988757879999999999862676773799980787