HHsearch alignment for GI: 254780806 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.61 E-value=1.6e-07 Score=63.41 Aligned_cols=169 Identities=15% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 7687499998088988889999999999998-799599998787768011212463334541167630257712102444
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
T Consensus 220 ~~~~kvi~lV-GPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYR-IgAvEQL------------------------kt 273 (432)
T PRK12724 220 KNQRKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR-IAAIEQL------------------------KR 273 (432)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC-HHHHHHH------------------------HH
T ss_conf 7776299998-99998889999999999999749927999526653-7799999------------------------99
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC------C-CHHHH---HH--HC
Q ss_conf 4442000148874577500012322221023332247651027820331013332222------1-01123---31--00
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLT------M-NAMAA---AD--SI 149 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~------~-~al~a---ad--~v 149 (265)
T Consensus 274 Ya~Il~-iPv-------~v--v~~---~~el~~al~---~~~~DlILIDTAGr-S~rd~~~~~eL~~ll~~~~~~~~ie~ 336 (432)
T PRK12724 274 YADTMG-MPF-------YP--VKD---IKKFKETLA---RDGSELILIDTAGY-SHRNLEQLERMQSFYSCFGEKDSVEN 336 (432)
T ss_pred HHHHHC-CCE-------EE--EEC---HHHHHHHHH---HCCCCEEEEECCCC-CCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 999859-945-------99--518---999999998---56999999929998-97899999999999986366788517
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC----CCCCCCCCHHHH
Q ss_conf 1111123113788875335777655432026774310020231253100112689998808520----156267868898
Q gi|254780806|r 150 LVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKV----YNTVIPRNVRIS 225 (265)
Q Consensus 150 iip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v----~~~~Ip~~~~i~ 225 (265)
T Consensus 337 ~LVLSaT-tk~~dl~~i---i~~f~-----~l~~~~lIfTKLDET~s~G~-ilni~~~-~~~PisYiT~GQ~VPdDI~~A 405 (432)
T PRK12724 337 LLVLSST-SSYHHTLTV---LKAYE-----SLNYRRILLTKLDEADFLGS-FLELADT-YSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred EEEEECC-CCHHHHHHH---HHHHC-----CCCCCEEEEEECCCCCCCCH-HHHHHHH-HCCCEEEEECCCCCCCCHHHC
T ss_conf 9999788-998999999---99842-----69998499971227798669-9999999-889869980899797173335