HHsearch alignment for GI: 254780806 and conserved domain: PRK13233
>PRK13233 nifH nitrogenase reductase; Reviewed.
Probab=100.00 E-value=2.5e-41 Score=260.72 Aligned_cols=239 Identities=21% Similarity=0.331 Sum_probs=182.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHH-HCCCCCCCCCCEEEEEEC----CCCHHHCCC
Q ss_conf 7499998088988889999999999998-7995999987877680112-124633345411676302----577121024
Q gi|254780806|r 6 SRIITIANQKGGVGKTTTAINLSTALAA-IGENVLLIDLDPQGNASTG-LGIELYDRKYSSYDLLIE----EKNINQILI 79 (265)
Q Consensus 6 ~kvI~v~s~KGGvGKTT~a~nlA~~la~-~g~rVllID~D~q~~~~~~-l~~~~~~~~~ti~~~l~~----~~~l~~~i~ 79 (265)
T Consensus 2 ~~~iaiy-GKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~---~~tv~d~l~~~~~~~~~~e~i-i 76 (275)
T PRK13233 2 TRKIAIY-GKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKP---QTTMMDTLRELGEEKVTPDKV-I 76 (275)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCC---CCCHHHHHHHCCCCCCCHHHH-H
T ss_conf 7389998-9985446545999999999647988999797887613677608987---883999998628875538888-7
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHH------HHHHCCCCC
Q ss_conf 44444200014887457750001232222102333224765102782033101333222210112------331001111
Q gi|254780806|r 80 QTAIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMA------AADSILVPL 153 (265)
Q Consensus 80 ~~~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~------aad~viip~ 153 (265)
T Consensus 77 ~~g~~gv~cVEaGgp~pG~gcagrgii~~-~~lle~~~-~~~~~~D~Vl~DvLG---dVvcGgFa~Pir~~~AdeV~IVt 151 (275)
T PRK13233 77 KTGFKGIRCVESGGPEPGVGCAGRGVITA-ITLMEEHG-AYEDDLDFVFFDVLG---DVVCGGFAMPIRDGKAQEVYIVA 151 (275)
T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCHHHH-HHHHHHHC-CCCCCCCEEEEECCC---CCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 53789857986899986665576312358-88899809-743468889984156---11055510343136688899994
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 12311378887533577765543202677431002023125310011268999880852015626786889877737985
Q gi|254780806|r 154 QCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP 233 (265)
Q Consensus 154 ~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p 233 (265)
T Consensus 152 s~E~msL~aannI~~~l~~~~~~~~--~~l~Gii~N~r~--~~~e~~~v~~fa~~ig~~vi~-~IPr~~~V~~Ae~~~~t 226 (275)
T PRK13233 152 SGEMMALYAANNICKGLVKYAEQSG--VRLGGIICNSRN--VDGELELLEEFTDAIGTQLIH-FVPRDNIVQKAEFNKKT 226 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEECCC--CCCHHHHHHHHHHHHCCCEEE-ECCCCHHHHHHHHCCCE
T ss_conf 6837999999999999999850589--638999971788--860799999999985995799-77897788877873976
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 79997999899999999999999998
Q gi|254780806|r 234 AIIYDLKCAGSQAYLKLASELIQQER 259 (265)
Q Consensus 234 v~~~~p~s~~a~~~~~la~el~~~~~ 259 (265)
T Consensus 227 Vie~~P~S~~A~~Y~~LAk~I~~n~~ 252 (275)
T PRK13233 227 VVEFDPTCNQAHEYKELARKIIENKN 252 (275)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 79989999799999999999985899