HHsearch alignment for GI: 254780806 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=100.00 E-value=7.3e-32 Score=205.53 Aligned_cols=195 Identities=18% Similarity=0.212 Sum_probs=141.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCCCCCCE
Q ss_conf 49999808898888999999999999879959999878776801121246333454116763025771210244444420
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIEEKNINQILIQTAIPNL 86 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~~~~~l 86 (265)
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~------------~~--------~~~ 61 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNT------------WD--------PAC 61 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCC------------CC--------CCC
T ss_conf 3799961899876999999999999978995999968998688999987652589------------88--------775
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 00148874577500012322221023332247651027820331013332222101123310011111231137888753
Q gi|254780806|r 87 SIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEFFALEGLSQL 166 (265)
Q Consensus 87 ~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~~s~~~~~~~ 166 (265)
T Consensus 62 ~v~~~------------~~---~~~l~~~~e~~~~~~~D~VIIDtpg~~s~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~t 126 (231)
T PRK13849 62 EVYAA------------DE---LPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALST 126 (231)
T ss_pred CEEEC------------CC---HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHH
T ss_conf 23405------------65---2578999988753699889981899775899999997898997799986679999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEECC--CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC---EEEECCC
Q ss_conf 3577765543202677431002023125--310011268999880852015626786889877737985---7999799
Q gi|254780806|r 167 LETVEEVRRTVNSALDIQGIILTMFDSR--NSLSQQVVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKP---AIIYDLK 240 (265)
Q Consensus 167 ~~~i~~~~~~~~~~~~~~~iv~N~~~~~--~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~p---v~~~~p~ 240 (265)
T Consensus 127 v~~i~~~~~~~~~~ip~-~vlltRv~a~~~t~~~~~i~~~l-e--~lPvl~T~i~eR~Af~~i~~~G~Lh~~l~~~~~~ 201 (231)
T PRK13849 127 YRYVIELLLSENLAIPT-AILRQRVPVGRLTTSQRAMSDML-E--SLPVVDSPMHERDAFAAMKERGMLHLTLLNLSTD 201 (231)
T ss_pred HHHHHHHHHHHCCCCCE-EEEEEECCHHHHCHHHHHHHHHH-H--CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCC
T ss_conf 99999999972878865-66654050454068899999999-6--2995555302279999999835146889865999