HHsearch alignment for GI: 254780806 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=100.00 E-value=0 Score=352.82 Aligned_cols=253 Identities=22% Similarity=0.391 Sum_probs=205.8
Q ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC---CCCCEEEEEE---CCCCHHH
Q ss_conf 768749999808898888999999999999879959999878776801121246333---4541167630---2577121
Q gi|254780806|r 3 EKKSRIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYD---RKYSSYDLLI---EEKNINQ 76 (265)
Q Consensus 3 ~~~~kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~---~~~ti~~~l~---~~~~l~~ 76 (265)
T Consensus 118 ~~~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQgnlS~~lG~~pe~d~~~~~tl~~~l~~d~~~~~l~~ 197 (405)
T PRK13869 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99982899978887765999999999999977998899964561788898089854566531359999844545587999
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCC----CCCCC----CHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf 024444442000148874577500012----32222----1023332247651027820331013332222101123310
Q gi|254780806|r 77 ILIQTAIPNLSIIPSTMDLLGIEMILG----GEKDR----LFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADS 148 (265)
Q Consensus 77 ~i~~~~~~~l~iipa~~~~~~~~~~l~----~~~~~----~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~ 148 (265)
T Consensus 198 ~I~~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~-~v~d~YDvIiIDcPPsLg~lT~nAL~AAd~ 276 (405)
T PRK13869 198 VIRPTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFD-EVADDYDVVVIDCPPQLGFLTLSGLCAATS 276 (405)
T ss_pred HCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEECCCCHHHHHHHHHHHHCE
T ss_conf 5216799996895898899998887599987433155689999999998-644129989995998265999999998286
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH---HHH--CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 011111231137888753357776554---320--267743100202312531001126899988085201562678688
Q gi|254780806|r 149 ILVPLQCEFFALEGLSQLLETVEEVRR---TVN--SALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRNVR 223 (265)
Q Consensus 149 viip~~p~~~s~~~~~~~~~~i~~~~~---~~~--~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~~~ 223 (265)
T Consensus 277 vlIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr~d~~~~~~~~v~~~lr~~fg~~Vl~~~i~~S~a 356 (405)
T PRK13869 277 MVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKSAA 356 (405)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 38648960878999999999999999999970788785404563140689982599999999999878886080737799
Q ss_pred HHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHHHH
Q ss_conf 987773798579997999-------899999999999999
Q gi|254780806|r 224 ISEAPSYGKPAIIYDLKC-------AGSQAYLKLASELIQ 256 (265)
Q Consensus 224 i~~a~~~g~pv~~~~p~s-------~~a~~~~~la~el~~ 256 (265)
T Consensus 357 is~A~~~~~TvyE~~~~~~~r~Ty~Ra~e~~d~v~~ei~~ 396 (405)
T PRK13869 357 VSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEIEA 396 (405)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986874496287650527889999999999999999999