HHsearch alignment for GI: 254780806 and conserved domain: TIGR00379
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=97.93 E-value=3.3e-05 Score=49.85 Aligned_cols=174 Identities=22% Similarity=0.305 Sum_probs=82.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCE-----EEEEC-CCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf 999808898888999999999999879959-----99987-8776-8011212463334541167630257712102444
Q gi|254780806|r 9 ITIANQKGGVGKTTTAINLSTALAAIGENV-----LLIDL-DPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQT 81 (265)
Q Consensus 9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rV-----llID~-D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~ 81 (265)
T Consensus 2 VviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVGP-DYIDP~fH~~aTG-----r~-sRNLDsF~~~~~~i~~~F~~~ 74 (464)
T TIGR00379 2 VVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVGP-DYIDPSFHTLATG-----RK-SRNLDSFFMSEAQIKELFIRH 74 (464)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC-CCCCCCCCCCCCC-----CC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 7883056875478999999999861863246544258-7437884541147-----86-667685330289999999986
Q ss_pred C-CC--CEEECCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 4-44--200014887457750-0012322221023332247651027820331013332222101123310011111231
Q gi|254780806|r 82 A-IP--NLSIIPSTMDLLGIE-MILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEF 157 (265)
Q Consensus 82 ~-~~--~l~iipa~~~~~~~~-~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~ 157 (265)
T Consensus 75 ~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~------P-----------------------vvLv~n~~~ 125 (464)
T TIGR00379 75 SKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDA------P-----------------------VVLVVNAKR 125 (464)
T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCC------C-----------------------EEEEEECCH
T ss_conf 13478965797274134367688776877518899998659------8-----------------------899995640
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHH
Q ss_conf 1378887533577765543202677431002023125310011268999880-8520156267868898
Q gi|254780806|r 158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNL-GGKVYNTVIPRNVRIS 225 (265)
Q Consensus 158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~-~~~v~~~~Ip~~~~i~ 225 (265)
T Consensus 126 L~-~saaAiv~Gy----~~fdp~V~l~GVILN~V~~-~rH~~k~k~A~e~L~Pgi~vlG-~~pR~~~l~ 187 (464)
T TIGR00379 126 LS-RSAAAIVLGY----RSFDPDVKLKGVILNRVGS-ERHLEKLKTAVEKLAPGIEVLG-VIPRKEDLK 187 (464)
T ss_pred HH-HHHHHHHHHH----HHCCCCCEEEEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEE-EEECCCCCC
T ss_conf 33-5786776413----4308983178788731077-4468999999886368945887-773675321