HHsearch alignment for GI: 254780806 and conserved domain: TIGR00379

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=97.93  E-value=3.3e-05  Score=49.85  Aligned_cols=174  Identities=22%  Similarity=0.305  Sum_probs=82.3

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCE-----EEEEC-CCCC-CCCHHHCCCCCCCCCCEEEEEECCCCHHHCCCCC
Q ss_conf             999808898888999999999999879959-----99987-8776-8011212463334541167630257712102444
Q gi|254780806|r    9 ITIANQKGGVGKTTTAINLSTALAAIGENV-----LLIDL-DPQG-NASTGLGIELYDRKYSSYDLLIEEKNINQILIQT   81 (265)
Q Consensus         9 I~v~s~KGGvGKTT~a~nlA~~la~~g~rV-----llID~-D~q~-~~~~~l~~~~~~~~~ti~~~l~~~~~l~~~i~~~   81 (265)
T Consensus         2 VviAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVGP-DYIDP~fH~~aTG-----r~-sRNLDsF~~~~~~i~~~F~~~   74 (464)
T TIGR00379         2 VVIAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVGP-DYIDPSFHTLATG-----RK-SRNLDSFFMSEAQIKELFIRH   74 (464)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC-CCCCCCCCCCCCC-----CC-CCCCCHHHHHHHHHHHHHHHH
T ss_conf             7883056875478999999999861863246544258-7437884541147-----86-667685330289999999986


Q ss_pred             C-CC--CEEECCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf             4-44--200014887457750-0012322221023332247651027820331013332222101123310011111231
Q gi|254780806|r   82 A-IP--NLSIIPSTMDLLGIE-MILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAAADSILVPLQCEF  157 (265)
Q Consensus        82 ~-~~--~l~iipa~~~~~~~~-~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~aad~viip~~p~~  157 (265)
T Consensus        75 ~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~------P-----------------------vvLv~n~~~  125 (464)
T TIGR00379        75 SKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDA------P-----------------------VVLVVNAKR  125 (464)
T ss_pred             HCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCC------C-----------------------EEEEEECCH
T ss_conf             13478965797274134367688776877518899998659------8-----------------------899995640


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHH-CCCCCCCCCCCCHHHH
Q ss_conf             1378887533577765543202677431002023125310011268999880-8520156267868898
Q gi|254780806|r  158 FALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNL-GGKVYNTVIPRNVRIS  225 (265)
Q Consensus       158 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~-~~~v~~~~Ip~~~~i~  225 (265)
T Consensus       126 L~-~saaAiv~Gy----~~fdp~V~l~GVILN~V~~-~rH~~k~k~A~e~L~Pgi~vlG-~~pR~~~l~  187 (464)
T TIGR00379       126 LS-RSAAAIVLGY----RSFDPDVKLKGVILNRVGS-ERHLEKLKTAVEKLAPGIEVLG-VIPRKEDLK  187 (464)
T ss_pred             HH-HHHHHHHHHH----HHCCCCCEEEEEEEEEECC-HHHHHHHHHHHHHHCCCCEEEE-EEECCCCCC
T ss_conf             33-5786776413----4308983178788731077-4468999999886368945887-773675321