HHsearch alignment for GI: 254780806 and conserved domain: cd01866
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.10 E-value=0.4 Score=26.08 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=59.5
Q ss_pred CCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 7820331013332--2221011233100111112-311378887533577765543202677431002023125310011
Q gi|254780806|r 124 FSYIFLDCPPSFN--LLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 124 yD~IiiD~pp~~~--~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
T Consensus 53 ~~l~iwDt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~---w~~~i~~~~~~~~~i-iLVGNK~DL~~--~r- 125 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS---WLEDARQHSNSNMTI-MLIGNKCDLES--RR- 125 (168)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHCEEEEECCCCCHHHHHHHHH---HHHHHHHHCCCCCEE-EEEEECCCHHH--CC-
T ss_conf 999999799973346255888664368999344587799999999---999999867999659-98434235454--07-
Q ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf 26899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r 201 VVSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ 257 (265)
Q Consensus 201 ~~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~ 257 (265)
T Consensus 126 ----------------~V~~~e~~~~a~~~~~~~~E~SAk~~~nV~~~F~~l~~~i~~k 168 (168)
T cd01866 126 ----------------EVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYEK 168 (168)
T ss_pred ----------------CCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf ----------------7899999999998699999976788808899999999999739