HHsearch alignment for GI: 254780806 and conserved domain: cd01867

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.37  E-value=1.1  Score=23.58  Aligned_cols=110  Identities=13%  Similarity=0.187  Sum_probs=54.0

Q ss_pred             CCCEEEECCCC--CCCCCCHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHH
Q ss_conf             82033101333--22221011233100111112-3113788875335777655432026774310020231253100112
Q gi|254780806|r  125 SYIFLDCPPSF--NLLTMNAMAAADSILVPLQC-EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQV  201 (265)
Q Consensus       125 D~IiiD~pp~~--~~~~~~al~aad~viip~~p-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~  201 (265)
T Consensus        53 ~l~iwDt~G~e~~~~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w---~~~i~~~~~~~~~~i-lVgNK~Dl~~~--r--  124 (167)
T cd01867          53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNW---MRNIEEHASEDVERM-LVGNKCDMEEK--R--  124 (167)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH---HHHHHHHCCCCCCEE-EECCCCCCHHC--C--
T ss_conf             999998999700116679985650588995568987999999999---999998669997057-64212450230--7--


Q ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHHH
Q ss_conf             6899988085201562678688987773798579997999--8999999999999999
Q gi|254780806|r  202 VSDVRKNLGGKVYNTVIPRNVRISEAPSYGKPAIIYDLKC--AGSQAYLKLASELIQQ  257 (265)
Q Consensus       202 ~~~l~~~~~~~v~~~~Ip~~~~i~~a~~~g~pv~~~~p~s--~~a~~~~~la~el~~~  257 (265)
T Consensus       125 ---------------~v~~~e~~~~a~~~~~~~~e~SAktg~nI~e~F~~l~~~i~~k  167 (167)
T cd01867         125 ---------------VVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIKKK  167 (167)
T ss_pred             ---------------CCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf             ---------------7999999999998099699982257907899999999999709