HHsearch alignment for GI: 254780806 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=95.90 E-value=0.0067 Score=36.43 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCCCCEEEECCCCC--CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHH
Q ss_conf 27820331013332--2221011233100111112311378887533577765543202677431002023125310011
Q gi|254780806|r 123 DFSYIFLDCPPSFN--LLTMNAMAAADSILVPLQCEFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQ 200 (265)
Q Consensus 123 ~yD~IiiD~pp~~~--~~~~~al~aad~viip~~p~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~ 200 (265)
T Consensus 64 ~~~~n~IDtPGH~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~---~~l~~a~~-~--~~~~i-v~iNK~D~~~a~~~~ 136 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR---FVLKKALE-L--GLKPI-VVINKIDRPDARPEE 136 (194)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH---HHHHHHHH-C--CCCEE-EEEECCCCCCCCHHH
T ss_conf 98899998998477777898776434467898653789758999---99999987-2--99749-988564589888999
Q ss_pred HHHHHHHHH
Q ss_conf 268999880
Q gi|254780806|r 201 VVSDVRKNL 209 (265)
Q Consensus 201 ~~~~l~~~~ 209 (265)
T Consensus 137 v~~ei~~~~ 145 (194)
T cd01891 137 VVDEVFDLF 145 (194)
T ss_pred HHHHHHHHH
T ss_conf 999999999