HHsearch alignment for GI: 254780806 and conserved domain: cd02117

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=100.00  E-value=9.5e-38  Score=239.87  Aligned_cols=201  Identities=23%  Similarity=0.354  Sum_probs=150.8

Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEC-----CCCHHHCCCCC
Q ss_conf             4999980889888899999999999987995999987877680112124633345411676302-----57712102444
Q gi|254780806|r    7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIE-----EKNINQILIQT   81 (265)
Q Consensus         7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~-----~~~l~~~i~~~   81 (265)
T Consensus         1 ~~iaiy-GKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~--~~~~~i~~~~~~~~~~~~~~~~~ii~-~   76 (212)
T cd02117           1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGG--KAPTTILELAAEDGHVEDLELEDVIF-E   76 (212)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCC--CCCCCHHHHHHHHCCCCCEEEEEEEE-E
T ss_conf             959998-8983568778999999999869969999038998733031199--77871999987527866445667899-6


Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH------HHHCCCCCCC
Q ss_conf             4442000148874577500012322221023332247651027820331013332222101123------3100111112
Q gi|254780806|r   82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA------ADSILVPLQC  155 (265)
Q Consensus        82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a------ad~viip~~p  155 (265)
T Consensus        77 g~~gv~~veaggp~~g~~~ag~~i~~~~~ll~~-~~-~~~~~~D~IliD~---lGdvv~~gf~~pi~~~~Ad~vlIvtt~  151 (212)
T cd02117          77 GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEK-EG-FAEDDLDVVLYDV---LGDVVCGGFAMPIREGKADEIYIVTSG  151 (212)
T ss_pred             CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HH-HHCCCCCEEEEEC---CCCCEECCCCCCCCCCCCCEEEEECCC
T ss_conf             688708998899776765454117889999997-41-0025799999965---885403563343211668889998069


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             311378887533577765543202677431002023125310011268999880852015626786
Q gi|254780806|r  156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRN  221 (265)
Q Consensus       156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~  221 (265)
T Consensus       152 E~~Al~~a~~l~k~I~~~~~~~n--~~l~GiI~N~~~~~--~~~~~i~~f~~~~g~~vl~-~IP~d  212 (212)
T cd02117         152 EFMALYAANNICKGIRKYAKSGG--VRLGGLICNSRNTD--RETELIDAFAERLGTQVIH-FVPRD  212 (212)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCCCC--CHHHHHHHHHHHHCCEEEE-ECCCC
T ss_conf             35788988999999999973679--81489998467888--6499999999983991899-74899