HHsearch alignment for GI: 254780806 and conserved domain: cd02117
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=100.00 E-value=9.5e-38 Score=239.87 Aligned_cols=201 Identities=23% Similarity=0.354 Sum_probs=150.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCCEEEEEEC-----CCCHHHCCCCC
Q ss_conf 4999980889888899999999999987995999987877680112124633345411676302-----57712102444
Q gi|254780806|r 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGLGIELYDRKYSSYDLLIE-----EKNINQILIQT 81 (265)
Q Consensus 7 kvI~v~s~KGGvGKTT~a~nlA~~la~~g~rVllID~D~q~~~~~~l~~~~~~~~~ti~~~l~~-----~~~l~~~i~~~ 81 (265)
T Consensus 1 ~~iaiy-GKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~--~~~~~i~~~~~~~~~~~~~~~~~ii~-~ 76 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGG--KAPTTILELAAEDGHVEDLELEDVIF-E 76 (212)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCC--CCCCCHHHHHHHHCCCCCEEEEEEEE-E
T ss_conf 959998-8983568778999999999869969999038998733031199--77871999987527866445667899-6
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHH------HHHCCCCCCC
Q ss_conf 4442000148874577500012322221023332247651027820331013332222101123------3100111112
Q gi|254780806|r 82 AIPNLSIIPSTMDLLGIEMILGGEKDRLFRLDKALSVQLTSDFSYIFLDCPPSFNLLTMNAMAA------ADSILVPLQC 155 (265)
Q Consensus 82 ~~~~l~iipa~~~~~~~~~~l~~~~~~~~~l~~~l~~~l~~~yD~IiiD~pp~~~~~~~~al~a------ad~viip~~p 155 (265)
T Consensus 77 g~~gv~~veaggp~~g~~~ag~~i~~~~~ll~~-~~-~~~~~~D~IliD~---lGdvv~~gf~~pi~~~~Ad~vlIvtt~ 151 (212)
T cd02117 77 GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEK-EG-FAEDDLDVVLYDV---LGDVVCGGFAMPIREGKADEIYIVTSG 151 (212)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HH-HHCCCCCEEEEEC---CCCCEECCCCCCCCCCCCCEEEEECCC
T ss_conf 688708998899776765454117889999997-41-0025799999965---885403563343211668889998069
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 311378887533577765543202677431002023125310011268999880852015626786
Q gi|254780806|r 156 EFFALEGLSQLLETVEEVRRTVNSALDIQGIILTMFDSRNSLSQQVVSDVRKNLGGKVYNTVIPRN 221 (265)
Q Consensus 156 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~l~~~~~~~v~~~~Ip~~ 221 (265)
T Consensus 152 E~~Al~~a~~l~k~I~~~~~~~n--~~l~GiI~N~~~~~--~~~~~i~~f~~~~g~~vl~-~IP~d 212 (212)
T cd02117 152 EFMALYAANNICKGIRKYAKSGG--VRLGGLICNSRNTD--RETELIDAFAERLGTQVIH-FVPRD 212 (212)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEEECCCCC--CHHHHHHHHHHHHCCEEEE-ECCCC
T ss_conf 35788988999999999973679--81489998467888--6499999999983991899-74899